Wall clock time and date at job start Sun Mar 29 2020 22:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99765 * 2 1 4 4 H 1.48498 * 109.47343 * 269.99855 * 3 2 1 5 5 H 1.48506 * 109.47291 * 30.00008 * 3 2 1 6 6 H 1.48501 * 109.47150 * 149.99664 * 3 2 1 7 7 C 1.37871 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00427 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00042 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.46894 * 111.00559 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47515 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 H 1.08994 * 110.46079 * 52.38704 * 14 13 12 16 16 C 1.54514 * 110.51229 * 175.00056 * 14 13 12 17 17 C 1.54478 * 104.06332 * 118.64151 * 16 14 13 18 18 O 1.44424 * 104.80518 * 23.97644 * 17 16 14 19 19 C 1.44428 * 105.27603 * 319.49097 * 18 17 16 20 20 H 0.96996 * 120.00288 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46949 * 60.00004 * 9 7 2 22 22 H 1.09005 * 109.47134 * 299.99983 * 9 7 2 23 23 H 1.00905 * 110.99607 * 303.95510 * 10 9 7 24 24 H 1.09002 * 109.47104 * 59.99767 * 11 10 9 25 25 H 1.08998 * 109.46828 * 300.00600 * 11 10 9 26 26 H 1.09002 * 109.47153 * 59.99762 * 12 11 10 27 27 H 1.09001 * 109.46832 * 299.99953 * 12 11 10 28 28 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 29 29 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 30 30 H 1.09000 * 110.50733 * 237.28365 * 16 14 13 31 31 H 1.09004 * 110.50745 * 359.97438 * 16 14 13 32 32 H 1.09001 * 110.37306 * 142.81193 * 17 16 14 33 33 H 1.09002 * 110.36723 * 265.03548 * 17 16 14 34 34 H 1.08997 * 110.36807 * 281.67741 * 19 18 17 35 35 H 1.09004 * 110.36892 * 159.34322 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0014 -2.5789 0.0022 11 6 5.4698 -2.6181 0.0034 12 6 5.9412 -4.0737 0.0039 13 6 7.4706 -4.1144 0.0058 14 6 7.9420 -5.5700 0.0057 15 1 7.4675 -6.1241 -0.8041 16 6 9.4805 -5.6409 -0.1185 17 6 9.9304 -6.3407 1.1831 18 8 8.7774 -7.0968 1.6130 19 6 7.6444 -6.2354 1.3677 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6799 0.8912 22 1 3.8753 -0.6803 -0.8889 23 1 3.6255 -3.0947 0.7838 24 1 5.8460 -2.1137 0.8935 25 1 5.8474 -2.1146 -0.8864 26 1 5.5650 -4.5777 -0.8863 27 1 5.5635 -4.5775 0.8937 28 1 7.8486 -3.6104 -0.8837 29 1 7.8464 -3.6105 0.8962 30 1 9.7665 -6.2320 -0.9885 31 1 9.9052 -4.6389 -0.1803 32 1 10.7693 -7.0078 0.9848 33 1 10.2039 -5.6016 1.9362 34 1 7.5655 -5.4803 2.1498 35 1 6.7272 -6.8217 1.3113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402095456.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:30 Heat of formation + Delta-G solvation = -89.770507 kcal Electronic energy + Delta-G solvation = -13880.942965 eV Core-core repulsion = 11491.018636 eV Total energy + Delta-G solvation = -2389.924329 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.43839 -37.74902 -35.60309 -34.38002 -32.08021 -30.22011 -28.59036 -25.64518 -23.82832 -23.02994 -22.14641 -21.12286 -18.95677 -17.41712 -16.95533 -16.64238 -16.50852 -16.06547 -15.48623 -15.24492 -14.54463 -14.39343 -14.21563 -13.61976 -13.43435 -13.28121 -12.73660 -12.53490 -12.37627 -12.25969 -12.01387 -11.82434 -11.61890 -11.52774 -11.34305 -11.22013 -10.82400 -10.74071 -9.15136 -8.31814 -6.36994 1.34273 1.35981 1.47104 2.32958 3.01962 3.06618 3.42921 3.70020 3.85216 3.96396 4.14902 4.22189 4.36495 4.38393 4.50524 4.68159 4.73065 4.75861 4.80926 4.86897 4.88450 4.95045 5.00434 5.09447 5.14049 5.23489 5.37406 5.45144 5.51466 5.87386 5.95499 6.54543 6.64878 6.75829 7.28368 8.85014 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.073626 B = 0.004400 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.211713 B = 6361.566514 C = 6555.882667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.251 1.251 7 C -0.532 4.532 8 H 0.036 0.964 9 C 0.173 3.827 10 N -0.694 5.694 11 C 0.055 3.945 12 C -0.109 4.109 13 C -0.099 4.099 14 C -0.118 4.118 15 H 0.082 0.918 16 C -0.149 4.149 17 C 0.037 3.963 18 O -0.405 6.405 19 C 0.044 3.956 20 H 0.268 0.732 21 H -0.013 1.013 22 H 0.024 0.976 23 H 0.336 0.664 24 H 0.024 0.976 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.717 -8.681 1.224 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.175 1.175 7 C -0.570 4.570 8 H 0.055 0.945 9 C 0.045 3.955 10 N -0.325 5.325 11 C -0.074 4.074 12 C -0.147 4.147 13 C -0.137 4.137 14 C -0.137 4.137 15 H 0.101 0.899 16 C -0.186 4.186 17 C -0.039 4.039 18 O -0.325 6.325 19 C -0.033 4.033 20 H 0.077 0.923 21 H 0.004 0.996 22 H 0.042 0.958 23 H 0.153 0.847 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 21.520 -8.854 0.629 23.279 hybrid contribution -0.250 1.150 0.791 1.418 sum 21.271 -7.704 1.420 22.667 Atomic orbital electron populations 1.70057 1.08208 1.28326 1.52195 1.25927 0.95697 1.03462 0.94030 0.85611 0.79216 0.78136 0.79314 1.18943 1.20467 1.17494 1.21370 0.91491 0.93488 1.50688 0.94537 1.19757 0.93678 0.87418 0.94690 1.60391 1.07694 1.14573 1.49811 1.22058 0.87548 0.97896 0.99894 1.21522 0.95857 0.94867 1.02430 1.21543 0.94172 0.95135 1.02899 1.22525 0.96420 0.96697 0.98062 0.89941 1.23024 0.94471 1.02456 0.98675 1.23596 0.89395 0.95656 0.95261 1.89087 1.16991 1.40631 1.85742 1.23636 0.89965 0.93638 0.96037 0.92271 0.99577 0.95831 0.84670 0.95801 0.91758 0.91733 0.91959 0.90774 0.91318 0.90050 0.89125 0.88044 0.91687 0.91879 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 2 C 0.01 0.38 5.47 84.65 0.46 0.84 16 3 Si 0.95 44.33 27.47 68.60 1.88 46.21 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 7 C -0.53 -31.51 9.87 25.60 0.25 -31.25 16 8 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 9 C 0.17 8.44 4.51 85.56 0.39 8.83 16 10 N -0.69 -28.68 6.49 -517.94 -3.36 -32.04 16 11 C 0.06 1.72 5.68 86.30 0.49 2.21 16 12 C -0.11 -2.61 5.35 30.59 0.16 -2.45 16 13 C -0.10 -1.81 4.43 30.59 0.14 -1.67 16 14 C -0.12 -2.01 3.11 -9.77 -0.03 -2.04 16 15 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 16 C -0.15 -2.06 6.74 31.61 0.21 -1.85 16 17 C 0.04 0.57 7.63 72.48 0.55 1.12 16 18 O -0.40 -8.94 11.65 -148.98 -1.74 -10.67 16 19 C 0.04 0.84 6.51 72.49 0.47 1.31 16 20 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 21 H -0.01 -0.64 7.20 -2.39 -0.02 -0.66 16 22 H 0.02 1.14 7.57 -2.38 -0.02 1.12 16 23 H 0.34 13.58 8.72 -89.69 -0.78 12.79 16 24 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 1.46 7.63 -2.39 -0.02 1.44 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.19 7.96 -2.39 -0.02 1.17 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.05 7.73 -2.38 -0.02 1.03 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 1.18 7.74 -2.39 -0.02 1.16 16 35 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -67.45 283.84 0.39 -67.06 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.20 Total: 13.95 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 3.10 Total: -24.95 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -3.06 Total: -91.59 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -1.74 Total: -10.67 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -67.45 0.39 -67.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402095456.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.709 kcal (2) G-P(sol) polarization free energy of solvation -67.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds