Wall clock time and date at job start Sun Mar 29 2020 21:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47062 * 2 1 4 4 O 1.42893 * 109.47428 * 120.00528 * 2 1 3 5 5 C 1.53000 * 109.46989 * 240.00501 * 2 1 3 6 6 H 1.09004 * 109.99856 * 175.54369 * 5 2 1 7 7 C 1.54315 * 109.77443 * 296.70177 * 5 2 1 8 8 C 1.55157 * 102.86418 * 141.88519 * 7 5 2 9 9 C 1.54906 * 101.58131 * 324.30495 * 8 7 5 10 10 N 1.47022 * 109.88588 * 54.44916 * 5 2 1 11 11 C 1.34776 * 125.64778 * 61.67785 * 10 5 2 12 12 O 1.21693 * 119.99961 * 354.83288 * 11 10 5 13 13 C 1.46369 * 120.00431 * 174.83758 * 11 10 5 14 14 H 1.08004 * 119.99457 * 0.02562 * 13 11 10 15 15 C 1.40051 * 120.00521 * 179.97438 * 13 11 10 16 16 N 1.30674 * 119.99496 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00160 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47358 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.47236 * 300.00200 * 17 15 13 20 20 H 1.48499 * 109.47502 * 59.99876 * 17 15 13 21 21 H 1.09000 * 109.46638 * 186.00229 * 1 2 3 22 22 H 1.09001 * 109.47191 * 305.99957 * 1 2 3 23 23 H 1.08999 * 109.47176 * 66.00135 * 1 2 3 24 24 H 0.96699 * 114.00151 * 59.99906 * 4 2 1 25 25 H 1.08997 * 110.92454 * 23.46672 * 7 5 2 26 26 H 1.09003 * 110.73878 * 260.21807 * 7 5 2 27 27 H 1.08995 * 111.00146 * 206.22427 * 8 7 5 28 28 H 1.09008 * 111.00287 * 82.37916 * 8 7 5 29 29 H 1.08999 * 110.36307 * 278.17126 * 9 8 7 30 30 H 1.08997 * 110.36310 * 155.84989 * 9 8 7 31 31 H 0.97001 * 119.99726 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.0400 -0.7211 -1.2493 6 1 3.1270 -0.6578 -1.2987 7 6 1.5988 -2.1995 -1.2154 8 6 1.2575 -2.4923 -2.7004 9 6 0.6521 -1.1401 -3.1528 10 7 1.4488 -0.1166 -2.4520 11 6 1.6127 1.1603 -2.8510 12 8 2.2214 1.9443 -2.1469 13 6 1.0586 1.6041 -4.1310 14 1 0.5180 0.9083 -4.7556 15 6 1.2285 2.9310 -4.5453 16 7 1.8813 3.7731 -3.7888 17 14 0.5207 3.4975 -6.1786 18 1 0.8350 4.9345 -6.3826 19 1 1.1162 2.6988 -7.2798 20 1 -0.9523 3.3097 -6.1716 21 1 -0.3632 -1.0221 0.1075 22 1 -0.3633 0.6040 0.8314 23 1 -0.3633 0.4180 -0.9388 24 1 1.7211 -1.5953 1.2327 25 1 0.7192 -2.3289 -0.5848 26 1 2.4137 -2.8378 -0.8739 27 1 0.5249 -3.2952 -2.7819 28 1 2.1573 -2.7273 -3.2691 29 1 -0.3947 -1.0749 -2.8559 30 1 0.7492 -1.0232 -4.2321 31 1 1.9993 4.6921 -4.0760 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409429892.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:14 Heat of formation + Delta-G solvation = -91.632344 kcal Electronic energy + Delta-G solvation = -15025.968442 eV Core-core repulsion = 12500.130283 eV Total energy + Delta-G solvation = -2525.838159 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.27128 -36.48257 -35.31755 -32.53798 -30.56650 -30.38205 -27.59877 -26.13727 -23.36777 -21.73342 -20.41792 -18.56440 -16.88003 -16.22895 -15.67361 -15.05874 -14.75490 -14.27680 -13.75367 -12.95365 -12.85530 -12.56244 -12.33941 -11.77786 -11.65017 -11.51183 -11.14847 -11.09031 -10.88534 -10.79396 -10.53469 -10.30105 -10.20998 -9.82080 -9.59354 -8.86740 -7.64844 -7.20282 -6.22371 -4.67510 3.13440 3.18610 3.20231 4.04495 4.43637 4.52130 4.93764 5.08737 5.11711 5.21484 5.52608 5.65589 5.75031 5.78272 5.85078 5.98934 6.09513 6.14160 6.33994 6.46317 6.56303 6.63419 6.72416 6.83581 7.37074 7.41051 8.00391 8.10633 8.39567 8.99022 9.46320 10.54582 10.73403 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041400 B = 0.010003 C = 0.008766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.162529 B = 2798.381398 C = 3193.529978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.090 3.910 3 H 0.116 0.884 4 O -0.568 6.568 5 C 0.118 3.882 6 H 0.062 0.938 7 C -0.136 4.136 8 C -0.133 4.133 9 C 0.117 3.883 10 N -0.636 5.636 11 C 0.571 3.429 12 O -0.572 6.572 13 C -0.540 4.540 14 H 0.069 0.931 15 C 0.087 3.913 16 N -0.766 5.766 17 Si 0.908 3.092 18 H -0.280 1.280 19 H -0.268 1.268 20 H -0.268 1.268 21 H 0.048 0.952 22 H 0.051 0.949 23 H 0.075 0.925 24 H 0.361 0.639 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.686 -10.610 1.775 11.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.031 3.969 3 H 0.134 0.866 4 O -0.371 6.371 5 C 0.013 3.987 6 H 0.080 0.920 7 C -0.174 4.174 8 C -0.171 4.171 9 C -0.007 4.007 10 N -0.377 5.377 11 C 0.378 3.622 12 O -0.454 6.454 13 C -0.576 4.576 14 H 0.087 0.913 15 C -0.133 4.133 16 N -0.395 5.395 17 Si 0.732 3.268 18 H -0.205 1.205 19 H -0.193 1.193 20 H -0.193 1.193 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.094 0.906 24 H 0.207 0.793 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.982 -9.275 2.287 10.007 hybrid contribution -0.691 -0.323 -1.045 1.293 sum -3.673 -9.598 1.242 10.351 Atomic orbital electron populations 1.22370 0.96850 1.00822 1.02964 1.22414 0.93104 0.97968 0.83419 0.86641 1.86609 1.77579 1.28138 1.44811 1.21839 0.97913 0.91283 0.87713 0.91979 1.22735 1.01108 0.96028 0.97514 1.22768 1.00972 0.97627 0.95769 1.21913 0.94395 0.86584 0.97835 1.48749 1.53707 1.11199 1.24062 1.18030 0.80078 0.77296 0.86821 1.90608 1.46241 1.51528 1.57068 1.20856 1.37689 0.95879 1.03212 0.91302 1.25721 0.93477 0.96372 0.97706 1.70006 1.30260 1.04185 1.35053 0.86432 0.79981 0.77945 0.82411 1.20522 1.19268 1.19265 0.93315 0.93020 0.90641 0.79300 0.91067 0.91077 0.91109 0.91194 0.93569 0.91140 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.11 37.16 0.34 -2.70 16 2 C 0.09 1.77 3.33 -26.73 -0.09 1.68 16 3 H 0.12 2.80 6.87 -51.93 -0.36 2.44 16 4 O -0.57 -9.76 13.30 -35.23 -0.47 -10.23 16 5 C 0.12 2.28 2.96 -66.96 -0.20 2.08 16 6 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 7 C -0.14 -1.90 5.34 -24.90 -0.13 -2.03 16 8 C -0.13 -1.84 7.08 -24.58 -0.17 -2.02 16 9 C 0.12 2.09 6.61 -2.53 -0.02 2.08 16 10 N -0.64 -14.23 2.01 -164.67 -0.33 -14.56 16 11 C 0.57 16.09 7.51 -12.99 -0.10 16.00 16 12 O -0.57 -18.28 13.96 5.19 0.07 -18.21 16 13 C -0.54 -15.06 9.00 -35.63 -0.32 -15.38 16 14 H 0.07 1.76 6.54 -52.48 -0.34 1.42 16 15 C 0.09 2.41 5.50 -17.36 -0.10 2.32 16 16 N -0.77 -22.83 11.83 55.55 0.66 -22.18 16 17 Si 0.91 20.01 29.56 -169.99 -5.02 14.98 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H 0.05 0.70 6.45 -51.93 -0.34 0.37 16 22 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.07 1.52 7.19 -51.93 -0.37 1.15 16 24 H 0.36 4.55 7.78 45.56 0.35 4.91 16 25 H 0.07 0.88 5.72 -51.93 -0.30 0.59 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.29 6.96 -51.93 -0.36 0.93 16 31 H 0.27 7.31 8.29 -40.82 -0.34 6.98 16 LS Contribution 253.08 15.07 3.81 3.81 Total: -1.00 -33.38 253.08 -5.45 -38.83 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -3.38 Total: 5.53 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -0.79 Total: 2.02 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.33 Total: -36.74 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.40 Total: -28.44 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -33.38 -5.45 -38.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409429892.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.799 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds