Wall clock time and date at job start Sun Mar 29 2020 21:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47062 * 2 1 4 4 O 1.42893 * 109.47428 * 120.00528 * 2 1 3 5 5 C 1.53000 * 109.46989 * 240.00501 * 2 1 3 6 6 H 1.09004 * 109.99856 * 175.54369 * 5 2 1 7 7 C 1.54315 * 109.77443 * 296.70177 * 5 2 1 8 8 C 1.55157 * 102.86418 * 141.88519 * 7 5 2 9 9 C 1.54906 * 101.58131 * 324.30495 * 8 7 5 10 10 N 1.47022 * 109.88588 * 54.44916 * 5 2 1 11 11 C 1.34776 * 125.64778 * 61.67785 * 10 5 2 12 12 O 1.21693 * 119.99961 * 354.83288 * 11 10 5 13 13 C 1.46369 * 120.00431 * 174.83758 * 11 10 5 14 14 H 1.08004 * 119.99457 * 0.02562 * 13 11 10 15 15 C 1.40051 * 120.00521 * 179.97438 * 13 11 10 16 16 N 1.30674 * 119.99496 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00160 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47358 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.47236 * 300.00200 * 17 15 13 20 20 H 1.48499 * 109.47502 * 59.99876 * 17 15 13 21 21 H 1.09000 * 109.46638 * 186.00229 * 1 2 3 22 22 H 1.09001 * 109.47191 * 305.99957 * 1 2 3 23 23 H 1.08999 * 109.47176 * 66.00135 * 1 2 3 24 24 H 0.96699 * 114.00151 * 59.99906 * 4 2 1 25 25 H 1.08997 * 110.92454 * 23.46672 * 7 5 2 26 26 H 1.09003 * 110.73878 * 260.21807 * 7 5 2 27 27 H 1.08995 * 111.00146 * 206.22427 * 8 7 5 28 28 H 1.09008 * 111.00287 * 82.37916 * 8 7 5 29 29 H 1.08999 * 110.36307 * 278.17126 * 9 8 7 30 30 H 1.08997 * 110.36310 * 155.84989 * 9 8 7 31 31 H 0.97001 * 119.99726 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.0400 -0.7211 -1.2493 6 1 3.1270 -0.6578 -1.2987 7 6 1.5988 -2.1995 -1.2154 8 6 1.2575 -2.4923 -2.7004 9 6 0.6521 -1.1401 -3.1528 10 7 1.4488 -0.1166 -2.4520 11 6 1.6127 1.1603 -2.8510 12 8 2.2214 1.9443 -2.1469 13 6 1.0586 1.6041 -4.1310 14 1 0.5180 0.9083 -4.7556 15 6 1.2285 2.9310 -4.5453 16 7 1.8813 3.7731 -3.7888 17 14 0.5207 3.4975 -6.1786 18 1 0.8350 4.9345 -6.3826 19 1 1.1162 2.6988 -7.2798 20 1 -0.9523 3.3097 -6.1716 21 1 -0.3632 -1.0221 0.1075 22 1 -0.3633 0.6040 0.8314 23 1 -0.3633 0.4180 -0.9388 24 1 1.7211 -1.5953 1.2327 25 1 0.7192 -2.3289 -0.5848 26 1 2.4137 -2.8378 -0.8739 27 1 0.5249 -3.2952 -2.7819 28 1 2.1573 -2.7273 -3.2691 29 1 -0.3947 -1.0749 -2.8559 30 1 0.7492 -1.0232 -4.2321 31 1 1.9993 4.6921 -4.0760 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409429892.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:14 Heat of formation + Delta-G solvation = -117.592660 kcal Electronic energy + Delta-G solvation = -15027.094166 eV Core-core repulsion = 12500.130283 eV Total energy + Delta-G solvation = -2526.963883 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.85961 -38.31084 -36.98442 -34.66101 -32.05415 -31.99751 -29.10051 -28.13392 -24.91295 -23.29455 -21.95295 -20.26754 -18.61997 -17.81397 -17.67846 -16.60667 -16.33056 -15.93558 -15.45163 -14.65323 -14.34452 -14.07246 -13.95244 -13.48731 -13.28237 -12.91863 -12.82630 -12.77171 -12.53798 -12.45084 -12.04757 -11.86662 -11.76575 -11.28675 -11.03628 -10.91496 -9.83068 -9.04091 -8.30276 -6.85757 1.37578 1.41130 1.52777 2.21553 2.44484 2.79596 3.54350 3.56163 3.71387 3.83724 4.04150 4.08086 4.25686 4.41624 4.55861 4.67941 4.88328 4.94864 5.03474 5.05702 5.16848 5.21287 5.28373 5.33264 5.42516 5.68696 6.05712 6.41816 6.84881 6.88134 7.50049 8.46740 8.66621 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041400 B = 0.010003 C = 0.008766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.162529 B = 2798.381398 C = 3193.529978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 H 0.053 0.947 4 O -0.571 6.571 5 C 0.110 3.890 6 H 0.028 0.972 7 C -0.120 4.120 8 C -0.118 4.118 9 C 0.106 3.894 10 N -0.641 5.641 11 C 0.553 3.447 12 O -0.627 6.627 13 C -0.566 4.566 14 H 0.087 0.913 15 C 0.028 3.972 16 N -0.823 5.823 17 Si 0.996 3.004 18 H -0.275 1.275 19 H -0.254 1.254 20 H -0.253 1.253 21 H 0.092 0.908 22 H 0.052 0.948 23 H 0.044 0.956 24 H 0.387 0.613 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.115 0.885 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.401 -13.416 0.979 14.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.071 0.929 4 O -0.378 6.378 5 C 0.005 3.995 6 H 0.047 0.953 7 C -0.158 4.158 8 C -0.156 4.156 9 C -0.017 4.017 10 N -0.379 5.379 11 C 0.359 3.641 12 O -0.514 6.514 13 C -0.603 4.603 14 H 0.105 0.895 15 C -0.187 4.187 16 N -0.452 5.452 17 Si 0.815 3.185 18 H -0.200 1.200 19 H -0.178 1.178 20 H -0.177 1.177 21 H 0.111 0.889 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.236 0.764 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.133 0.867 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.720 -12.173 1.499 13.142 hybrid contribution -0.119 0.476 -0.702 0.856 sum -4.838 -11.697 0.797 12.683 Atomic orbital electron populations 1.22245 0.94913 1.03327 1.01329 1.21951 0.94338 0.95374 0.84440 0.92906 1.86564 1.77731 1.30104 1.43375 1.22019 0.96031 0.95099 0.86394 0.95332 1.22744 1.03128 0.91468 0.98413 1.22755 1.01813 0.96023 0.95038 1.22226 0.94808 0.87611 0.97076 1.48503 1.53526 1.10514 1.25367 1.18372 0.79728 0.78962 0.86989 1.90559 1.48417 1.53996 1.58468 1.21380 1.38158 0.96999 1.03717 0.89470 1.26992 0.93251 0.96152 1.02289 1.70196 1.32243 1.04832 1.37940 0.85102 0.79594 0.77479 0.76340 1.20002 1.17785 1.17667 0.88897 0.92909 0.93698 0.76372 0.88302 0.88252 0.86719 0.91270 0.92253 0.92122 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.49 9.11 71.98 0.66 -4.84 16 2 C 0.10 3.94 3.33 30.59 0.10 4.04 16 3 H 0.05 2.77 6.87 -2.39 -0.02 2.76 16 4 O -0.57 -18.88 13.30 -148.98 -1.98 -20.87 16 5 C 0.11 4.23 2.96 45.34 0.13 4.37 16 6 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 7 C -0.12 -2.86 5.34 31.78 0.17 -2.69 16 8 C -0.12 -2.77 7.08 31.98 0.23 -2.55 16 9 C 0.11 3.59 6.61 86.86 0.57 4.16 16 10 N -0.64 -29.14 2.01 -793.13 -1.59 -30.73 16 11 C 0.55 32.70 7.51 86.36 0.65 33.35 16 12 O -0.63 -43.00 13.96 -4.33 -0.06 -43.06 16 13 C -0.57 -32.43 9.00 24.83 0.22 -32.21 16 14 H 0.09 4.48 6.54 -2.91 -0.02 4.46 16 15 C 0.03 1.59 5.50 85.30 0.47 2.06 16 16 N -0.82 -51.29 11.83 21.84 0.26 -51.03 16 17 Si 1.00 41.33 29.56 68.60 2.03 43.36 16 18 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 19 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 20 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 21 H 0.09 2.30 6.45 -2.39 -0.02 2.29 16 22 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.04 1.81 7.19 -2.39 -0.02 1.79 16 24 H 0.39 8.30 7.78 -74.06 -0.58 7.73 16 25 H 0.10 1.85 5.72 -2.39 -0.01 1.83 16 26 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 2.15 6.96 -2.39 -0.02 2.14 16 31 H 0.27 15.52 8.29 -92.71 -0.77 14.76 16 Total: -1.00 -79.81 253.08 2.42 -77.39 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.56 Total: 19.25 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 3.20 Total: 5.69 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -1.33 Total: -81.76 kcal Atomic # 8 Polarization: -61.88 SS G_CDS: -2.04 Total: -63.92 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -79.81 2.42 -77.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409429892.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.203 kcal (2) G-P(sol) polarization free energy of solvation -79.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds