Wall clock time and date at job start Sun Mar 29 2020 21:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47073 * 2 1 4 4 O 1.42897 * 109.47100 * 239.99601 * 2 1 3 5 5 C 1.53004 * 109.46962 * 119.99365 * 2 1 3 6 6 H 1.08997 * 109.99753 * 304.84109 * 5 2 1 7 7 C 1.54319 * 109.76886 * 65.99454 * 5 2 1 8 8 C 1.55161 * 102.86296 * 141.88621 * 7 5 2 9 9 C 1.54913 * 101.57819 * 324.30054 * 8 7 5 10 10 N 1.47019 * 109.88177 * 183.73983 * 5 2 1 11 11 C 1.34777 * 125.64843 * 61.68246 * 10 5 2 12 12 O 1.21690 * 119.99723 * 354.80535 * 11 10 5 13 13 C 1.46368 * 120.00096 * 174.79839 * 11 10 5 14 14 H 1.07996 * 120.00272 * 0.02562 * 13 11 10 15 15 C 1.40053 * 120.00245 * 180.02562 * 13 11 10 16 16 N 1.30673 * 119.99750 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00217 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47189 * 269.99600 * 17 15 13 19 19 H 1.48497 * 109.47234 * 29.99730 * 17 15 13 20 20 H 1.48505 * 109.47063 * 149.99908 * 17 15 13 21 21 H 1.09003 * 109.47065 * 304.94263 * 1 2 3 22 22 H 1.09000 * 109.47113 * 64.93731 * 1 2 3 23 23 H 1.08993 * 109.47609 * 184.94108 * 1 2 3 24 24 H 0.96696 * 113.99983 * 60.00001 * 4 2 1 25 25 H 1.08999 * 110.92602 * 23.47201 * 7 5 2 26 26 H 1.08999 * 110.74138 * 260.21055 * 7 5 2 27 27 H 1.08999 * 111.00670 * 206.22745 * 8 7 5 28 28 H 1.08999 * 111.00311 * 82.37169 * 8 7 5 29 29 H 1.08997 * 110.37049 * 278.17054 * 9 8 7 30 30 H 1.09004 * 110.36642 * 155.84497 * 9 8 7 31 31 H 0.96993 * 120.00029 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7211 1.2494 6 1 1.6125 -0.2663 2.1429 7 6 1.6569 -2.2146 1.1829 8 6 2.9030 -2.9178 1.7831 9 6 4.0502 -2.0187 1.2584 10 7 3.5073 -0.6488 1.3045 11 6 4.2354 0.4822 1.3889 12 8 3.6849 1.5659 1.3306 13 6 5.6881 0.4071 1.5510 14 1 6.1767 -0.5547 1.6024 15 6 6.4447 1.5823 1.6393 16 7 5.8535 2.7461 1.5775 17 14 8.2988 1.4864 1.8453 18 1 8.6352 1.4562 3.2914 19 1 8.8061 0.2525 1.1932 20 1 8.9290 2.6743 1.2152 21 1 -0.3633 0.5886 0.8424 22 1 -0.3633 0.4353 -0.9309 23 1 -0.3634 -1.0238 0.0885 24 1 1.7210 -0.2703 -1.9979 25 1 1.4954 -2.5296 0.1520 26 1 0.7728 -2.4136 1.7886 27 1 2.9986 -3.9349 1.4029 28 1 2.8685 -2.9112 2.8725 29 1 4.3075 -2.2906 0.2347 30 1 4.9238 -2.1024 1.9050 31 1 6.3775 3.5600 1.6383 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409429895.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:16 Heat of formation + Delta-G solvation = -92.228277 kcal Electronic energy + Delta-G solvation = -14962.312963 eV Core-core repulsion = 12436.448962 eV Total energy + Delta-G solvation = -2525.864000 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.91812 -36.27632 -35.24819 -32.45815 -31.09956 -30.13405 -27.42953 -25.99923 -23.11972 -21.41832 -20.33718 -18.63140 -16.75333 -16.39329 -15.50965 -15.16440 -14.35156 -14.02463 -13.71529 -12.82842 -12.74106 -12.53932 -12.30804 -11.98569 -11.58880 -11.36539 -11.23787 -11.01910 -10.81305 -10.65118 -10.32217 -10.18973 -10.07883 -9.92967 -9.32842 -8.81095 -7.52960 -7.07122 -6.15454 -4.58928 3.16077 3.22739 3.26594 4.11904 4.58511 4.62874 4.79847 5.25270 5.31002 5.38764 5.56989 5.63681 5.78869 5.87786 5.99871 6.02017 6.20204 6.26327 6.31138 6.41819 6.58648 6.72143 6.80056 6.83974 7.48146 7.50827 8.17455 8.21557 8.50100 9.06481 9.58692 10.62539 10.82117 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.040537 B = 0.009984 C = 0.008713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.569695 B = 2803.953477 C = 3212.948073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.086 3.914 3 H 0.076 0.924 4 O -0.558 6.558 5 C 0.155 3.845 6 H 0.065 0.935 7 C -0.124 4.124 8 C -0.135 4.135 9 C 0.122 3.878 10 N -0.634 5.634 11 C 0.575 3.425 12 O -0.579 6.579 13 C -0.538 4.538 14 H 0.069 0.931 15 C 0.087 3.913 16 N -0.770 5.770 17 Si 0.907 3.093 18 H -0.272 1.272 19 H -0.265 1.265 20 H -0.279 1.279 21 H 0.061 0.939 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.364 0.636 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 -8.255 -1.744 10.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.026 3.974 3 H 0.094 0.906 4 O -0.362 6.362 5 C 0.050 3.950 6 H 0.083 0.917 7 C -0.162 4.162 8 C -0.174 4.174 9 C -0.002 4.002 10 N -0.373 5.373 11 C 0.381 3.619 12 O -0.462 6.462 13 C -0.575 4.575 14 H 0.087 0.913 15 C -0.132 4.132 16 N -0.399 5.399 17 Si 0.732 3.268 18 H -0.198 1.198 19 H -0.189 1.189 20 H -0.205 1.205 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.209 0.791 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.136 -7.746 -1.302 9.967 hybrid contribution 0.589 0.309 -0.320 0.738 sum -5.547 -7.437 -1.622 9.418 Atomic orbital electron populations 1.22503 0.97623 1.01914 1.01811 1.22297 0.91053 0.97732 0.86299 0.90582 1.86519 1.77474 1.56904 1.15343 1.21200 0.84892 0.94410 0.94533 0.91688 1.22584 0.97263 0.94731 1.01603 1.22783 0.95915 0.98399 1.00263 1.21849 0.95785 0.83172 0.99426 1.48599 1.03219 1.05941 1.79497 1.17966 0.87353 0.80422 0.76126 1.90567 1.72818 1.26905 1.55891 1.20908 0.90199 0.93327 1.53040 0.91316 1.25721 0.99893 0.94876 0.92741 1.70022 1.36324 0.97876 1.35631 0.86384 0.83070 0.78497 0.78889 1.19761 1.18883 1.20475 0.91967 0.92948 0.92357 0.79059 0.90161 0.91855 0.91277 0.91542 0.93395 0.91557 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 9.44 37.16 0.35 -2.28 16 2 C 0.09 1.66 3.27 -26.73 -0.09 1.57 16 3 H 0.08 1.79 6.58 -51.93 -0.34 1.45 16 4 O -0.56 -10.33 12.11 -35.23 -0.43 -10.76 16 5 C 0.15 3.14 2.74 -66.95 -0.18 2.96 16 6 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 7 C -0.12 -1.98 5.34 -24.90 -0.13 -2.11 16 8 C -0.14 -2.12 7.08 -24.58 -0.17 -2.29 16 9 C 0.12 2.44 6.62 -2.53 -0.02 2.43 16 10 N -0.63 -15.27 3.00 -164.66 -0.49 -15.77 16 11 C 0.57 16.94 7.60 -12.99 -0.10 16.84 16 12 O -0.58 -18.89 13.82 5.20 0.07 -18.82 16 13 C -0.54 -15.65 9.00 -35.63 -0.32 -15.97 16 14 H 0.07 1.86 6.54 -52.49 -0.34 1.51 16 15 C 0.09 2.48 5.50 -17.36 -0.10 2.38 16 16 N -0.77 -23.38 11.83 55.55 0.66 -22.72 16 17 Si 0.91 20.56 29.56 -169.99 -5.02 15.53 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.77 7.28 -51.93 -0.38 0.39 16 24 H 0.36 5.16 9.08 45.56 0.41 5.57 16 25 H 0.08 1.28 7.01 -51.93 -0.36 0.92 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.33 6.96 -51.93 -0.36 0.97 16 31 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 LS Contribution 256.98 15.07 3.87 3.87 Total: -1.00 -34.86 256.98 -5.57 -40.43 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -3.47 Total: 4.71 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -0.76 Total: 3.52 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.16 Total: -38.49 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.35 Total: -29.58 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -34.86 -5.57 -40.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409429895.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.796 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds