Wall clock time and date at job start Sun Mar 29 2020 21:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47073 * 2 1 4 4 O 1.42897 * 109.47100 * 239.99601 * 2 1 3 5 5 C 1.53004 * 109.46962 * 119.99365 * 2 1 3 6 6 H 1.08997 * 109.99753 * 304.84109 * 5 2 1 7 7 C 1.54319 * 109.76886 * 65.99454 * 5 2 1 8 8 C 1.55161 * 102.86296 * 141.88621 * 7 5 2 9 9 C 1.54913 * 101.57819 * 324.30054 * 8 7 5 10 10 N 1.47019 * 109.88177 * 183.73983 * 5 2 1 11 11 C 1.34777 * 125.64843 * 61.68246 * 10 5 2 12 12 O 1.21690 * 119.99723 * 354.80535 * 11 10 5 13 13 C 1.46368 * 120.00096 * 174.79839 * 11 10 5 14 14 H 1.07996 * 120.00272 * 0.02562 * 13 11 10 15 15 C 1.40053 * 120.00245 * 180.02562 * 13 11 10 16 16 N 1.30673 * 119.99750 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00217 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47189 * 269.99600 * 17 15 13 19 19 H 1.48497 * 109.47234 * 29.99730 * 17 15 13 20 20 H 1.48505 * 109.47063 * 149.99908 * 17 15 13 21 21 H 1.09003 * 109.47065 * 304.94263 * 1 2 3 22 22 H 1.09000 * 109.47113 * 64.93731 * 1 2 3 23 23 H 1.08993 * 109.47609 * 184.94108 * 1 2 3 24 24 H 0.96696 * 113.99983 * 60.00001 * 4 2 1 25 25 H 1.08999 * 110.92602 * 23.47201 * 7 5 2 26 26 H 1.08999 * 110.74138 * 260.21055 * 7 5 2 27 27 H 1.08999 * 111.00670 * 206.22745 * 8 7 5 28 28 H 1.08999 * 111.00311 * 82.37169 * 8 7 5 29 29 H 1.08997 * 110.37049 * 278.17054 * 9 8 7 30 30 H 1.09004 * 110.36642 * 155.84497 * 9 8 7 31 31 H 0.96993 * 120.00029 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7211 1.2494 6 1 1.6125 -0.2663 2.1429 7 6 1.6569 -2.2146 1.1829 8 6 2.9030 -2.9178 1.7831 9 6 4.0502 -2.0187 1.2584 10 7 3.5073 -0.6488 1.3045 11 6 4.2354 0.4822 1.3889 12 8 3.6849 1.5659 1.3306 13 6 5.6881 0.4071 1.5510 14 1 6.1767 -0.5547 1.6024 15 6 6.4447 1.5823 1.6393 16 7 5.8535 2.7461 1.5775 17 14 8.2988 1.4864 1.8453 18 1 8.6352 1.4562 3.2914 19 1 8.8061 0.2525 1.1932 20 1 8.9290 2.6743 1.2152 21 1 -0.3633 0.5886 0.8424 22 1 -0.3633 0.4353 -0.9309 23 1 -0.3634 -1.0238 0.0885 24 1 1.7210 -0.2703 -1.9979 25 1 1.4954 -2.5296 0.1520 26 1 0.7728 -2.4136 1.7886 27 1 2.9986 -3.9349 1.4029 28 1 2.8685 -2.9112 2.8725 29 1 4.3075 -2.2906 0.2347 30 1 4.9238 -2.1024 1.9050 31 1 6.3775 3.5600 1.6383 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409429895.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:16 Heat of formation + Delta-G solvation = -119.777018 kcal Electronic energy + Delta-G solvation = -14963.507566 eV Core-core repulsion = 12436.448962 eV Total energy + Delta-G solvation = -2527.058604 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.60012 -38.14106 -36.97441 -34.65155 -32.62394 -31.79669 -28.99631 -27.99425 -24.73883 -22.99892 -21.95647 -20.42022 -18.54450 -18.13811 -17.52060 -16.76671 -16.18313 -15.62376 -15.24865 -14.58318 -14.52213 -14.06820 -13.87809 -13.42447 -13.21480 -13.01542 -12.84308 -12.66686 -12.62955 -12.45458 -12.00554 -11.83091 -11.57092 -11.38482 -10.95738 -10.83985 -9.75961 -9.01403 -8.29779 -6.84794 1.36768 1.38916 1.53926 2.22434 2.44975 2.88909 3.36384 3.59114 3.85757 3.91671 4.08663 4.25735 4.29495 4.48358 4.55967 4.69480 4.94668 4.97013 5.01217 5.09736 5.12019 5.22092 5.29607 5.33738 5.47664 5.71009 6.07089 6.47067 6.85952 6.90876 7.52668 8.47522 8.67263 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.040537 B = 0.009984 C = 0.008713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.569695 B = 2803.953477 C = 3212.948073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.090 3.910 3 H 0.018 0.982 4 O -0.569 6.569 5 C 0.138 3.862 6 H 0.050 0.950 7 C -0.109 4.109 8 C -0.121 4.121 9 C 0.112 3.888 10 N -0.643 5.643 11 C 0.554 3.446 12 O -0.628 6.628 13 C -0.568 4.568 14 H 0.082 0.918 15 C 0.028 3.972 16 N -0.822 5.822 17 Si 0.997 3.003 18 H -0.259 1.259 19 H -0.251 1.251 20 H -0.271 1.271 21 H 0.061 0.939 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.382 0.618 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.166 -10.657 -1.743 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.030 3.970 3 H 0.036 0.964 4 O -0.376 6.376 5 C 0.034 3.966 6 H 0.068 0.932 7 C -0.147 4.147 8 C -0.159 4.159 9 C -0.012 4.012 10 N -0.379 5.379 11 C 0.361 3.639 12 O -0.515 6.515 13 C -0.605 4.605 14 H 0.100 0.900 15 C -0.186 4.186 16 N -0.452 5.452 17 Si 0.816 3.184 18 H -0.184 1.184 19 H -0.174 1.174 20 H -0.196 1.196 21 H 0.080 0.920 22 H 0.090 0.910 23 H 0.101 0.899 24 H 0.230 0.770 25 H 0.104 0.896 26 H 0.116 0.884 27 H 0.125 0.875 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.145 -10.209 -1.315 11.988 hybrid contribution 0.524 1.038 -0.360 1.217 sum -5.621 -9.171 -1.674 10.886 Atomic orbital electron populations 1.22358 0.93479 1.03670 1.02906 1.22051 0.94138 0.94387 0.86407 0.96393 1.86451 1.78185 1.56854 1.16095 1.21538 0.82630 0.97990 0.94470 0.93239 1.22561 0.98624 0.90708 1.02773 1.22766 0.93220 0.99073 1.00794 1.22092 0.97576 0.82008 0.99486 1.48457 1.05199 1.06288 1.77959 1.18322 0.88292 0.81227 0.76090 1.90514 1.73849 1.29191 1.57939 1.21404 0.90812 0.94503 1.53762 0.89980 1.26985 1.06320 0.93918 0.91423 1.70189 1.39197 0.99083 1.36699 0.85042 0.74724 0.79158 0.79515 1.18383 1.17407 1.19561 0.92023 0.91043 0.89883 0.76993 0.89559 0.88398 0.87525 0.90690 0.93704 0.92244 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.57 9.44 71.98 0.68 -3.89 16 2 C 0.09 3.51 3.27 30.59 0.10 3.61 16 3 H 0.02 0.91 6.58 -2.39 -0.02 0.89 16 4 O -0.57 -20.79 12.11 -148.98 -1.80 -22.60 16 5 C 0.14 5.59 2.74 45.34 0.12 5.72 16 6 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 7 C -0.11 -3.12 5.34 31.78 0.17 -2.95 16 8 C -0.12 -3.37 7.08 31.99 0.23 -3.15 16 9 C 0.11 4.38 6.62 86.86 0.58 4.95 16 10 N -0.64 -31.62 3.00 -793.09 -2.38 -34.00 16 11 C 0.55 34.16 7.60 86.36 0.66 34.81 16 12 O -0.63 -43.51 13.82 -4.32 -0.06 -43.57 16 13 C -0.57 -33.99 9.00 24.83 0.22 -33.77 16 14 H 0.08 4.49 6.54 -2.91 -0.02 4.47 16 15 C 0.03 1.64 5.50 85.31 0.47 2.10 16 16 N -0.82 -51.84 11.83 21.84 0.26 -51.58 16 17 Si 1.00 42.48 29.56 68.60 2.03 44.50 16 18 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 19 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.08 1.89 7.28 -2.39 -0.02 1.88 16 24 H 0.38 10.60 9.08 -74.06 -0.67 9.92 16 25 H 0.09 2.42 7.01 -2.39 -0.02 2.40 16 26 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 2.36 6.96 -2.38 -0.02 2.35 16 31 H 0.27 15.60 8.29 -92.71 -0.77 14.83 16 Total: -1.00 -80.61 256.98 1.72 -78.88 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.46 Total: 20.92 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 3.22 Total: 7.45 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -2.12 Total: -85.58 kcal Atomic # 8 Polarization: -64.31 SS G_CDS: -1.86 Total: -66.17 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -80.61 1.72 -78.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409429895.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.893 kcal (2) G-P(sol) polarization free energy of solvation -80.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds