Wall clock time and date at job start Sun Mar 29 2020 21:53:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.47073 * 2 1
4 4 O 1.42897 * 109.47100 * 239.99601 * 2 1 3
5 5 C 1.53004 * 109.46962 * 119.99365 * 2 1 3
6 6 H 1.08997 * 109.99753 * 304.84109 * 5 2 1
7 7 C 1.54319 * 109.76886 * 65.99454 * 5 2 1
8 8 C 1.55161 * 102.86296 * 141.88621 * 7 5 2
9 9 C 1.54913 * 101.57819 * 324.30054 * 8 7 5
10 10 N 1.47019 * 109.88177 * 183.73983 * 5 2 1
11 11 C 1.34777 * 125.64843 * 61.68246 * 10 5 2
12 12 O 1.21690 * 119.99723 * 354.80535 * 11 10 5
13 13 C 1.46368 * 120.00096 * 174.79839 * 11 10 5
14 14 H 1.07996 * 120.00272 * 0.02562 * 13 11 10
15 15 C 1.40053 * 120.00245 * 180.02562 * 13 11 10
16 16 N 1.30673 * 119.99750 * 0.02562 * 15 13 11
17 17 Si 1.86797 * 120.00217 * 180.02562 * 15 13 11
18 18 H 1.48500 * 109.47189 * 269.99600 * 17 15 13
19 19 H 1.48497 * 109.47234 * 29.99730 * 17 15 13
20 20 H 1.48505 * 109.47063 * 149.99908 * 17 15 13
21 21 H 1.09003 * 109.47065 * 304.94263 * 1 2 3
22 22 H 1.09000 * 109.47113 * 64.93731 * 1 2 3
23 23 H 1.08993 * 109.47609 * 184.94108 * 1 2 3
24 24 H 0.96696 * 113.99983 * 60.00001 * 4 2 1
25 25 H 1.08999 * 110.92602 * 23.47201 * 7 5 2
26 26 H 1.08999 * 110.74138 * 260.21055 * 7 5 2
27 27 H 1.08999 * 111.00670 * 206.22745 * 8 7 5
28 28 H 1.08999 * 111.00311 * 82.37169 * 8 7 5
29 29 H 1.08997 * 110.37049 * 278.17054 * 9 8 7
30 30 H 1.09004 * 110.36642 * 155.84497 * 9 8 7
31 31 H 0.96993 * 120.00029 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0063 -0.6737 -1.1667
5 6 2.0399 -0.7211 1.2494
6 1 1.6125 -0.2663 2.1429
7 6 1.6569 -2.2146 1.1829
8 6 2.9030 -2.9178 1.7831
9 6 4.0502 -2.0187 1.2584
10 7 3.5073 -0.6488 1.3045
11 6 4.2354 0.4822 1.3889
12 8 3.6849 1.5659 1.3306
13 6 5.6881 0.4071 1.5510
14 1 6.1767 -0.5547 1.6024
15 6 6.4447 1.5823 1.6393
16 7 5.8535 2.7461 1.5775
17 14 8.2988 1.4864 1.8453
18 1 8.6352 1.4562 3.2914
19 1 8.8061 0.2525 1.1932
20 1 8.9290 2.6743 1.2152
21 1 -0.3633 0.5886 0.8424
22 1 -0.3633 0.4353 -0.9309
23 1 -0.3634 -1.0238 0.0885
24 1 1.7210 -0.2703 -1.9979
25 1 1.4954 -2.5296 0.1520
26 1 0.7728 -2.4136 1.7886
27 1 2.9986 -3.9349 1.4029
28 1 2.8685 -2.9112 2.8725
29 1 4.3075 -2.2906 0.2347
30 1 4.9238 -2.1024 1.9050
31 1 6.3775 3.5600 1.6383
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000409429895.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:53:16
Heat of formation + Delta-G solvation = -119.777018 kcal
Electronic energy + Delta-G solvation = -14963.507566 eV
Core-core repulsion = 12436.448962 eV
Total energy + Delta-G solvation = -2527.058604 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-40.60012 -38.14106 -36.97441 -34.65155 -32.62394 -31.79669 -28.99631 -27.99425
-24.73883 -22.99892 -21.95647 -20.42022 -18.54450 -18.13811 -17.52060 -16.76671
-16.18313 -15.62376 -15.24865 -14.58318 -14.52213 -14.06820 -13.87809 -13.42447
-13.21480 -13.01542 -12.84308 -12.66686 -12.62955 -12.45458 -12.00554 -11.83091
-11.57092 -11.38482 -10.95738 -10.83985 -9.75961 -9.01403 -8.29779 -6.84794
1.36768 1.38916 1.53926 2.22434 2.44975 2.88909 3.36384 3.59114
3.85757 3.91671 4.08663 4.25735 4.29495 4.48358 4.55967 4.69480
4.94668 4.97013 5.01217 5.09736 5.12019 5.22092 5.29607 5.33738
5.47664 5.71009 6.07089 6.47067 6.85952 6.90876 7.52668 8.47522
8.67263
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.040537 B = 0.009984 C = 0.008713
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 690.569695 B = 2803.953477 C = 3212.948073
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.090 3.910
3 H 0.018 0.982
4 O -0.569 6.569
5 C 0.138 3.862
6 H 0.050 0.950
7 C -0.109 4.109
8 C -0.121 4.121
9 C 0.112 3.888
10 N -0.643 5.643
11 C 0.554 3.446
12 O -0.628 6.628
13 C -0.568 4.568
14 H 0.082 0.918
15 C 0.028 3.972
16 N -0.822 5.822
17 Si 0.997 3.003
18 H -0.259 1.259
19 H -0.251 1.251
20 H -0.271 1.271
21 H 0.061 0.939
22 H 0.071 0.929
23 H 0.082 0.918
24 H 0.382 0.618
25 H 0.086 0.914
26 H 0.098 0.902
27 H 0.106 0.894
28 H 0.074 0.926
29 H 0.045 0.955
30 H 0.059 0.941
31 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.166 -10.657 -1.743 12.435
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.030 3.970
3 H 0.036 0.964
4 O -0.376 6.376
5 C 0.034 3.966
6 H 0.068 0.932
7 C -0.147 4.147
8 C -0.159 4.159
9 C -0.012 4.012
10 N -0.379 5.379
11 C 0.361 3.639
12 O -0.515 6.515
13 C -0.605 4.605
14 H 0.100 0.900
15 C -0.186 4.186
16 N -0.452 5.452
17 Si 0.816 3.184
18 H -0.184 1.184
19 H -0.174 1.174
20 H -0.196 1.196
21 H 0.080 0.920
22 H 0.090 0.910
23 H 0.101 0.899
24 H 0.230 0.770
25 H 0.104 0.896
26 H 0.116 0.884
27 H 0.125 0.875
28 H 0.093 0.907
29 H 0.063 0.937
30 H 0.078 0.922
31 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -6.145 -10.209 -1.315 11.988
hybrid contribution 0.524 1.038 -0.360 1.217
sum -5.621 -9.171 -1.674 10.886
Atomic orbital electron populations
1.22358 0.93479 1.03670 1.02906 1.22051 0.94138 0.94387 0.86407
0.96393 1.86451 1.78185 1.56854 1.16095 1.21538 0.82630 0.97990
0.94470 0.93239 1.22561 0.98624 0.90708 1.02773 1.22766 0.93220
0.99073 1.00794 1.22092 0.97576 0.82008 0.99486 1.48457 1.05199
1.06288 1.77959 1.18322 0.88292 0.81227 0.76090 1.90514 1.73849
1.29191 1.57939 1.21404 0.90812 0.94503 1.53762 0.89980 1.26985
1.06320 0.93918 0.91423 1.70189 1.39197 0.99083 1.36699 0.85042
0.74724 0.79158 0.79515 1.18383 1.17407 1.19561 0.92023 0.91043
0.89883 0.76993 0.89559 0.88398 0.87525 0.90690 0.93704 0.92244
0.91618
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.57 9.44 71.98 0.68 -3.89 16
2 C 0.09 3.51 3.27 30.59 0.10 3.61 16
3 H 0.02 0.91 6.58 -2.39 -0.02 0.89 16
4 O -0.57 -20.79 12.11 -148.98 -1.80 -22.60 16
5 C 0.14 5.59 2.74 45.34 0.12 5.72 16
6 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16
7 C -0.11 -3.12 5.34 31.78 0.17 -2.95 16
8 C -0.12 -3.37 7.08 31.99 0.23 -3.15 16
9 C 0.11 4.38 6.62 86.86 0.58 4.95 16
10 N -0.64 -31.62 3.00 -793.09 -2.38 -34.00 16
11 C 0.55 34.16 7.60 86.36 0.66 34.81 16
12 O -0.63 -43.51 13.82 -4.32 -0.06 -43.57 16
13 C -0.57 -33.99 9.00 24.83 0.22 -33.77 16
14 H 0.08 4.49 6.54 -2.91 -0.02 4.47 16
15 C 0.03 1.64 5.50 85.31 0.47 2.10 16
16 N -0.82 -51.84 11.83 21.84 0.26 -51.58 16
17 Si 1.00 42.48 29.56 68.60 2.03 44.50 16
18 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16
19 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16
20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16
21 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
22 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16
23 H 0.08 1.89 7.28 -2.39 -0.02 1.88 16
24 H 0.38 10.60 9.08 -74.06 -0.67 9.92 16
25 H 0.09 2.42 7.01 -2.39 -0.02 2.40 16
26 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16
27 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16
28 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16
29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16
30 H 0.06 2.36 6.96 -2.38 -0.02 2.35 16
31 H 0.27 15.60 8.29 -92.71 -0.77 14.83 16
Total: -1.00 -80.61 256.98 1.72 -78.88
By element:
Atomic # 1 Polarization: 20.46 SS G_CDS: 0.46 Total: 20.92 kcal
Atomic # 6 Polarization: 4.22 SS G_CDS: 3.22 Total: 7.45 kcal
Atomic # 7 Polarization: -83.46 SS G_CDS: -2.12 Total: -85.58 kcal
Atomic # 8 Polarization: -64.31 SS G_CDS: -1.86 Total: -66.17 kcal
Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal
Total: -80.61 1.72 -78.88 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000409429895.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.893 kcal
(2) G-P(sol) polarization free energy of solvation -80.606 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.499 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.884 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.777 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds