Wall clock time and date at job start Sun Mar 29 2020 21:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.45945 * 2 1 4 4 C 1.53042 * 109.45810 * 240.04535 * 2 1 3 5 5 C 1.53625 * 109.24052 * 178.48886 * 4 2 1 6 6 N 1.46930 * 108.54107 * 54.85799 * 5 4 2 7 7 C 1.36933 * 120.62828 * 126.36851 * 6 5 4 8 8 H 1.07998 * 119.99597 * 207.30452 * 7 6 5 9 9 C 1.38812 * 120.00097 * 27.30969 * 7 6 5 10 10 N 1.31609 * 120.00249 * 17.94596 * 9 7 6 11 11 Si 1.86810 * 119.99737 * 197.94935 * 9 7 6 12 12 H 1.48496 * 109.46783 * 265.36259 * 11 9 7 13 13 H 1.48505 * 109.47035 * 25.36016 * 11 9 7 14 14 H 1.48494 * 109.46819 * 145.35820 * 11 9 7 15 15 C 1.46927 * 118.73658 * 306.08953 * 6 5 4 16 16 C 1.53035 * 109.46178 * 119.97651 * 2 1 3 17 17 H 1.09004 * 109.52403 * 61.41404 * 16 2 1 18 18 C 1.50700 * 109.49573 * 301.33870 * 16 2 1 19 19 O 1.20828 * 120.00342 * 0.16018 * 18 16 2 20 20 O 1.34234 * 119.99607 * 180.16368 * 18 16 2 21 21 H 1.08997 * 109.46615 * 300.02421 * 1 2 3 22 22 H 1.09005 * 109.47242 * 60.02181 * 1 2 3 23 23 H 1.08998 * 109.47232 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.50131 * 298.56762 * 4 2 1 25 25 H 1.09008 * 109.49961 * 58.63414 * 4 2 1 26 26 H 1.09001 * 109.74162 * 295.11975 * 5 4 2 27 27 H 1.09005 * 109.66353 * 174.54990 * 5 4 2 28 28 H 0.97001 * 120.00351 * 180.02562 * 10 9 7 29 29 H 1.08997 * 109.58643 * 173.64639 * 15 6 5 30 30 H 1.08996 * 109.58849 * 293.93687 * 15 6 5 31 31 H 0.96701 * 116.99693 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0398 -0.7205 -1.2503 5 6 3.5756 -0.6845 -1.2644 6 7 4.0679 -1.2488 -0.0003 7 6 4.9764 -2.2733 -0.0006 8 1 5.0107 -2.9648 0.8284 9 6 5.8533 -2.4231 -1.0662 10 7 6.0667 -1.4184 -1.8891 11 14 6.7305 -4.0509 -1.3322 12 1 8.0678 -4.0034 -0.6884 13 1 5.9305 -5.1483 -0.7313 14 1 6.8903 -4.2948 -2.7882 15 6 3.5714 -0.6888 1.2641 16 6 2.0399 -0.7209 1.2499 17 1 1.6978 -1.7558 1.2386 18 6 1.5109 -0.0298 2.4801 19 8 0.7965 0.9383 2.3692 20 8 1.8333 -0.4898 3.6993 21 1 -0.3632 0.5142 0.8898 22 1 -0.3634 0.5135 -0.8902 23 1 -0.3633 -1.0276 0.0005 24 1 1.6978 -1.7554 -1.2388 25 1 1.6568 -0.2206 -2.1400 26 1 3.9189 0.3453 -1.3631 27 1 3.9487 -1.2779 -2.0993 28 1 6.6792 -1.5232 -2.6339 29 1 3.9417 -1.2849 2.0981 30 1 3.9164 0.3399 1.3685 31 1 1.4697 -0.0138 4.4584 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575489135.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:54 Heat of formation + Delta-G solvation = -81.689546 kcal Electronic energy + Delta-G solvation = -14916.558630 eV Core-core repulsion = 12391.151623 eV Total energy + Delta-G solvation = -2525.407007 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.27038 -37.51594 -35.87309 -33.71281 -31.23613 -30.29354 -27.55166 -24.51436 -23.38942 -21.57238 -20.68037 -19.08381 -17.73467 -16.95720 -15.92565 -15.40235 -14.73442 -13.90993 -13.73736 -13.47909 -13.16965 -12.98651 -12.45423 -11.88289 -11.72923 -11.42249 -11.11600 -10.94845 -10.84684 -10.60948 -10.36319 -10.17017 -10.14428 -9.91051 -9.58618 -9.34532 -8.49842 -6.75305 -5.82783 -3.25467 2.50865 3.35995 3.38722 3.43822 3.46588 4.47041 5.10524 5.28183 5.38651 5.44062 5.60336 5.80053 5.89736 5.98948 6.12904 6.26650 6.32720 6.42849 6.56138 6.62846 6.72862 6.78609 6.84118 6.92816 7.34913 7.63562 7.77381 8.19953 8.39546 9.16212 9.78618 10.34830 11.25789 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043245 B = 0.009296 C = 0.008223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.313885 B = 3011.257876 C = 3404.322930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.067 4.067 3 H 0.070 0.930 4 C -0.136 4.136 5 C 0.166 3.834 6 N -0.588 5.588 7 C -0.256 4.256 8 H 0.068 0.932 9 C 0.004 3.996 10 N -0.901 5.901 11 Si 0.903 3.097 12 H -0.287 1.287 13 H -0.278 1.278 14 H -0.289 1.289 15 C 0.158 3.842 16 C -0.093 4.093 17 H 0.104 0.896 18 C 0.487 3.513 19 O -0.522 6.522 20 O -0.515 6.515 21 H 0.074 0.926 22 H 0.049 0.951 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.020 0.980 27 H 0.090 0.910 28 H 0.254 0.746 29 H 0.067 0.933 30 H 0.022 0.978 31 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.407 1.193 5.354 10.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.085 4.085 3 H 0.088 0.912 4 C -0.175 4.175 5 C 0.040 3.960 6 N -0.310 5.310 7 C -0.386 4.386 8 H 0.086 0.914 9 C -0.195 4.195 10 N -0.545 5.545 11 Si 0.733 3.267 12 H -0.214 1.214 13 H -0.203 1.203 14 H -0.215 1.215 15 C 0.031 3.969 16 C -0.114 4.114 17 H 0.122 0.878 18 C 0.330 3.670 19 O -0.411 6.411 20 O -0.326 6.326 21 H 0.092 0.908 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.039 0.961 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -8.297 1.231 4.821 9.675 hybrid contribution 0.205 -0.428 0.324 0.574 sum -8.092 0.804 5.145 9.622 Atomic orbital electron populations 1.22150 0.95880 1.01105 1.02640 1.20893 0.94890 0.99347 0.93408 0.91197 1.22342 1.00405 0.99499 0.95231 1.20977 0.87509 0.97348 0.90147 1.44080 1.48185 1.39598 0.99131 1.19196 1.10115 1.02922 1.06347 0.91399 1.25037 0.97141 0.97511 0.99823 1.70046 1.37445 1.28925 1.18036 0.86275 0.79510 0.83733 0.77221 1.21427 1.20334 1.21522 1.20776 0.87433 0.97376 0.91335 1.21833 1.01193 1.00315 0.88094 0.87757 1.23978 0.76510 0.81869 0.84641 1.90589 1.36098 1.27344 1.87056 1.84637 1.71410 1.59683 1.16890 0.90777 0.93176 0.93667 0.92445 0.92637 0.96138 0.89157 0.93553 0.91487 0.95996 0.74219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 8.86 37.16 0.33 -2.17 16 2 C -0.07 -1.18 1.87 -90.58 -0.17 -1.35 16 3 H 0.07 1.32 8.13 -51.93 -0.42 0.89 16 4 C -0.14 -2.58 5.38 -26.38 -0.14 -2.72 16 5 C 0.17 3.90 5.34 -3.48 -0.02 3.89 16 6 N -0.59 -14.52 2.99 -172.05 -0.51 -15.04 16 7 C -0.26 -6.92 9.59 -15.06 -0.14 -7.06 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 9 C 0.00 0.10 4.90 -17.43 -0.09 0.02 16 10 N -0.90 -25.79 11.20 55.49 0.62 -25.17 16 11 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.16 3.31 5.73 -3.71 -0.02 3.29 16 16 C -0.09 -1.66 2.33 -91.66 -0.21 -1.87 16 17 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 18 C 0.49 7.90 7.34 36.01 0.26 8.16 16 19 O -0.52 -9.25 14.33 -18.75 -0.27 -9.52 16 20 O -0.52 -6.90 13.35 -39.27 -0.52 -7.42 16 21 H 0.07 1.21 5.40 -51.93 -0.28 0.93 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 2.37 6.03 -51.93 -0.31 2.05 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.40 3.35 9.10 45.56 0.41 3.77 16 LS Contribution 253.89 15.07 3.83 3.83 Total: -1.00 -30.18 253.89 -5.61 -35.79 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -3.52 Total: 1.04 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.20 Total: 0.18 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.11 Total: -40.20 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.79 Total: -16.94 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.18 -5.61 -35.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575489135.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.898 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds