Wall clock time and date at job start Sun Mar 29 2020 21:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.45945 * 2 1 4 4 C 1.53042 * 109.45810 * 240.04535 * 2 1 3 5 5 C 1.53625 * 109.24052 * 178.48886 * 4 2 1 6 6 N 1.46930 * 108.54107 * 54.85799 * 5 4 2 7 7 C 1.36933 * 120.62828 * 126.36851 * 6 5 4 8 8 H 1.07998 * 119.99597 * 207.30452 * 7 6 5 9 9 C 1.38812 * 120.00097 * 27.30969 * 7 6 5 10 10 N 1.31609 * 120.00249 * 17.94596 * 9 7 6 11 11 Si 1.86810 * 119.99737 * 197.94935 * 9 7 6 12 12 H 1.48496 * 109.46783 * 265.36259 * 11 9 7 13 13 H 1.48505 * 109.47035 * 25.36016 * 11 9 7 14 14 H 1.48494 * 109.46819 * 145.35820 * 11 9 7 15 15 C 1.46927 * 118.73658 * 306.08953 * 6 5 4 16 16 C 1.53035 * 109.46178 * 119.97651 * 2 1 3 17 17 H 1.09004 * 109.52403 * 61.41404 * 16 2 1 18 18 C 1.50700 * 109.49573 * 301.33870 * 16 2 1 19 19 O 1.20828 * 120.00342 * 0.16018 * 18 16 2 20 20 O 1.34234 * 119.99607 * 180.16368 * 18 16 2 21 21 H 1.08997 * 109.46615 * 300.02421 * 1 2 3 22 22 H 1.09005 * 109.47242 * 60.02181 * 1 2 3 23 23 H 1.08998 * 109.47232 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.50131 * 298.56762 * 4 2 1 25 25 H 1.09008 * 109.49961 * 58.63414 * 4 2 1 26 26 H 1.09001 * 109.74162 * 295.11975 * 5 4 2 27 27 H 1.09005 * 109.66353 * 174.54990 * 5 4 2 28 28 H 0.97001 * 120.00351 * 180.02562 * 10 9 7 29 29 H 1.08997 * 109.58643 * 173.64639 * 15 6 5 30 30 H 1.08996 * 109.58849 * 293.93687 * 15 6 5 31 31 H 0.96701 * 116.99693 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0398 -0.7205 -1.2503 5 6 3.5756 -0.6845 -1.2644 6 7 4.0679 -1.2488 -0.0003 7 6 4.9764 -2.2733 -0.0006 8 1 5.0107 -2.9648 0.8284 9 6 5.8533 -2.4231 -1.0662 10 7 6.0667 -1.4184 -1.8891 11 14 6.7305 -4.0509 -1.3322 12 1 8.0678 -4.0034 -0.6884 13 1 5.9305 -5.1483 -0.7313 14 1 6.8903 -4.2948 -2.7882 15 6 3.5714 -0.6888 1.2641 16 6 2.0399 -0.7209 1.2499 17 1 1.6978 -1.7558 1.2386 18 6 1.5109 -0.0298 2.4801 19 8 0.7965 0.9383 2.3692 20 8 1.8333 -0.4898 3.6993 21 1 -0.3632 0.5142 0.8898 22 1 -0.3634 0.5135 -0.8902 23 1 -0.3633 -1.0276 0.0005 24 1 1.6978 -1.7554 -1.2388 25 1 1.6568 -0.2206 -2.1400 26 1 3.9189 0.3453 -1.3631 27 1 3.9487 -1.2779 -2.0993 28 1 6.6792 -1.5232 -2.6339 29 1 3.9417 -1.2849 2.0981 30 1 3.9164 0.3399 1.3685 31 1 1.4697 -0.0138 4.4584 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575489135.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:54 Heat of formation + Delta-G solvation = -101.436255 kcal Electronic energy + Delta-G solvation = -14917.414911 eV Core-core repulsion = 12391.151623 eV Total energy + Delta-G solvation = -2526.263288 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.58914 -39.07591 -37.13549 -35.47190 -33.03432 -31.99831 -29.17716 -26.30665 -24.98956 -23.03230 -22.35532 -20.61354 -19.02038 -18.72380 -17.43799 -16.86113 -16.55621 -15.58353 -15.33503 -15.08899 -14.78079 -14.45950 -14.05795 -13.40799 -13.19046 -13.03983 -12.73883 -12.64813 -12.34289 -12.25794 -12.10136 -11.90328 -11.72657 -11.60382 -11.18121 -10.91246 -10.53415 -8.74445 -7.88435 -5.34300 1.21421 1.49020 1.50918 1.61044 2.18671 2.53190 3.27404 3.62846 3.72283 3.94436 4.10512 4.35864 4.46279 4.61044 4.67322 4.77822 4.92573 4.94541 5.01102 5.06677 5.24842 5.30071 5.40576 5.52054 5.65289 5.74495 5.76277 6.37091 7.07906 7.12647 7.81155 8.33683 9.18466 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043245 B = 0.009296 C = 0.008223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.313885 B = 3011.257876 C = 3404.322930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.064 4.064 3 H 0.055 0.945 4 C -0.122 4.122 5 C 0.170 3.830 6 N -0.606 5.606 7 C -0.266 4.266 8 H 0.072 0.928 9 C -0.049 4.049 10 N -0.934 5.934 11 Si 0.969 3.031 12 H -0.287 1.287 13 H -0.267 1.267 14 H -0.293 1.293 15 C 0.159 3.841 16 C -0.087 4.087 17 H 0.112 0.888 18 C 0.498 3.502 19 O -0.536 6.536 20 O -0.509 6.509 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.074 0.926 26 H -0.004 1.004 27 H 0.059 0.941 28 H 0.251 0.749 29 H 0.069 0.931 30 H 0.012 0.988 31 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.700 0.466 6.292 11.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.083 4.083 3 H 0.074 0.926 4 C -0.160 4.160 5 C 0.045 3.955 6 N -0.328 5.328 7 C -0.396 4.396 8 H 0.090 0.910 9 C -0.244 4.244 10 N -0.580 5.580 11 Si 0.796 3.204 12 H -0.214 1.214 13 H -0.192 1.192 14 H -0.219 1.219 15 C 0.032 3.968 16 C -0.108 4.108 17 H 0.129 0.871 18 C 0.341 3.659 19 O -0.426 6.426 20 O -0.323 6.323 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.014 0.986 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -9.615 0.508 5.811 11.246 hybrid contribution 0.628 -0.159 0.124 0.659 sum -8.988 0.348 5.935 10.776 Atomic orbital electron populations 1.22040 0.93534 1.02059 1.03117 1.20837 0.96678 0.98170 0.92597 0.92602 1.22153 0.96629 1.00246 0.97015 1.20808 0.90619 0.95066 0.89017 1.44315 1.48314 1.39612 1.00604 1.19545 1.10161 1.03506 1.06364 0.91022 1.25805 0.98304 1.00466 0.99867 1.70198 1.38426 1.30770 1.18581 0.85252 0.78295 0.80155 0.76675 1.21375 1.19166 1.21888 1.20805 0.89695 0.96433 0.89830 1.21600 0.98583 1.01135 0.89501 0.87056 1.23406 0.76170 0.81272 0.85054 1.90599 1.36828 1.27753 1.87451 1.84560 1.71112 1.59743 1.16866 0.91187 0.91849 0.92433 0.92083 0.90714 0.98601 0.92222 0.94011 0.91238 0.97055 0.71303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 8.86 71.98 0.64 -3.61 16 2 C -0.06 -2.17 1.87 -10.77 -0.02 -2.19 16 3 H 0.06 2.05 8.13 -2.38 -0.02 2.03 16 4 C -0.12 -4.49 5.38 30.82 0.17 -4.32 16 5 C 0.17 8.17 5.34 86.51 0.46 8.64 16 6 N -0.61 -30.11 2.99 -698.25 -2.09 -32.20 16 7 C -0.27 -14.38 9.59 84.03 0.81 -13.57 16 8 H 0.07 3.74 7.89 -2.91 -0.02 3.71 16 9 C -0.05 -2.69 4.90 84.86 0.42 -2.28 16 10 N -0.93 -54.78 11.20 21.65 0.24 -54.54 16 11 Si 0.97 44.11 29.59 68.60 2.03 46.14 16 12 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 14 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 15 C 0.16 6.56 5.73 86.36 0.49 7.06 16 16 C -0.09 -2.96 2.33 -11.46 -0.03 -2.99 16 17 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 18 C 0.50 14.96 7.34 71.24 0.52 15.49 16 19 O -0.54 -17.72 14.33 21.96 0.31 -17.41 16 20 O -0.51 -12.12 13.35 -51.46 -0.69 -12.81 16 21 H 0.07 2.08 5.40 -2.39 -0.01 2.07 16 22 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.07 2.45 8.14 -2.38 -0.02 2.44 16 26 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.06 3.22 6.03 -2.38 -0.01 3.20 16 28 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.07 2.79 7.93 -2.39 -0.02 2.77 16 30 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.43 5.66 9.10 -74.06 -0.67 4.99 16 Total: -1.00 -64.28 253.89 3.72 -60.56 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.45 Total: 8.03 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 3.46 Total: 2.22 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -1.85 Total: -86.73 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.37 Total: -30.22 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -64.28 3.72 -60.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575489135.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.881 kcal (2) G-P(sol) polarization free energy of solvation -64.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds