Wall clock time and date at job start Sun Mar 29 2020 21:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.45008 * 2 1 4 4 C 1.53042 * 109.46022 * 240.03774 * 2 1 3 5 5 C 1.53200 * 109.30934 * 301.34499 * 4 2 1 6 6 N 1.46921 * 108.77606 * 305.36403 * 5 4 2 7 7 C 1.36941 * 120.63196 * 233.63437 * 6 5 4 8 8 H 1.07999 * 120.00058 * 27.66388 * 7 6 5 9 9 C 1.38808 * 119.99762 * 207.66814 * 7 6 5 10 10 N 1.31620 * 120.00185 * 17.35489 * 9 7 6 11 11 Si 1.86807 * 119.99838 * 197.35706 * 9 7 6 12 12 H 1.48507 * 109.46873 * 60.00157 * 11 9 7 13 13 H 1.48497 * 109.46966 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47264 * 300.00175 * 11 9 7 15 15 C 1.46927 * 118.73904 * 53.61023 * 6 5 4 16 16 C 1.53040 * 109.46217 * 119.96866 * 2 1 3 17 17 H 1.08993 * 109.52505 * 178.62341 * 16 2 1 18 18 C 1.50699 * 109.49400 * 298.70542 * 16 2 1 19 19 O 1.20827 * 120.00090 * 359.83752 * 18 16 2 20 20 O 1.34235 * 119.99872 * 179.83324 * 18 16 2 21 21 H 1.08993 * 109.46982 * 300.03164 * 1 2 3 22 22 H 1.09003 * 109.46764 * 60.03271 * 1 2 3 23 23 H 1.08995 * 109.47001 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.50006 * 181.39393 * 4 2 1 25 25 H 1.08998 * 109.52848 * 61.30948 * 4 2 1 26 26 H 1.09001 * 109.58401 * 185.57677 * 5 4 2 27 27 H 1.09000 * 109.70355 * 65.22858 * 5 4 2 28 28 H 0.97009 * 119.99676 * 179.97438 * 10 9 7 29 29 H 1.08996 * 109.58800 * 186.60670 * 15 6 5 30 30 H 1.08995 * 109.58616 * 66.17724 * 15 6 5 31 31 H 0.96694 * 116.99676 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 1.4995 -2.1541 -1.2643 6 7 1.8625 -2.8089 -0.0002 7 6 2.5269 -4.0063 -0.0002 8 1 3.1688 -4.2677 -0.8285 9 6 2.3753 -4.8841 1.0644 10 7 1.3621 -4.7451 1.8928 11 14 3.6094 -6.2627 1.3212 12 1 4.9625 -5.6847 1.5227 13 1 3.2262 -7.0535 2.5183 14 1 3.6211 -7.1455 0.1271 15 6 1.4996 -2.1542 1.2641 16 6 2.0399 -0.7208 1.2500 17 1 3.1296 -0.7428 1.2388 18 6 1.5642 0.0082 2.4802 19 8 0.8891 1.0041 2.3690 20 8 1.8903 -0.4489 3.6994 21 1 -0.3633 0.5143 0.8896 22 1 -0.3633 0.5133 -0.8903 23 1 -0.3633 -1.0276 0.0005 24 1 3.1296 -0.7428 -1.2384 25 1 1.6963 -0.1936 -2.1402 26 1 1.9382 -2.7017 -2.0985 27 1 0.4147 -2.1369 -1.3687 28 1 1.2560 -5.3588 2.6366 29 1 1.9382 -2.7018 2.0983 30 1 0.4147 -2.1347 1.3672 31 1 1.5623 0.0524 4.4584 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575489137.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:00 Heat of formation + Delta-G solvation = -79.200047 kcal Electronic energy + Delta-G solvation = -15169.585967 eV Core-core repulsion = 12644.286913 eV Total energy + Delta-G solvation = -2525.299054 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.14324 -37.69666 -35.66911 -33.55831 -30.99636 -30.25619 -27.12165 -24.96313 -23.59200 -21.85887 -20.75616 -18.10462 -17.55862 -16.62097 -15.88428 -15.48595 -14.55197 -14.37130 -13.75697 -13.19039 -13.09759 -12.92186 -12.76949 -11.83238 -11.41372 -11.27237 -10.97893 -10.76325 -10.65850 -10.59404 -10.42164 -10.19607 -10.09813 -9.81422 -9.51630 -9.43285 -8.48828 -6.72313 -5.82955 -3.25494 2.69712 3.37879 3.43967 3.44954 3.59666 4.47602 5.21379 5.32430 5.43978 5.52995 5.59592 5.96609 6.01326 6.13929 6.18017 6.23692 6.31071 6.51294 6.58547 6.65500 6.77043 6.87280 6.94882 7.09622 7.22117 7.56655 7.76721 8.38798 8.40778 9.15349 9.79110 10.35733 11.25810 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033332 B = 0.011731 C = 0.009516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.820889 B = 2386.180456 C = 2941.669257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.064 4.064 3 H 0.059 0.941 4 C -0.129 4.129 5 C 0.141 3.859 6 N -0.588 5.588 7 C -0.258 4.258 8 H 0.068 0.932 9 C 0.005 3.995 10 N -0.901 5.901 11 Si 0.904 3.096 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.282 1.282 15 C 0.185 3.815 16 C -0.106 4.106 17 H 0.100 0.900 18 C 0.490 3.510 19 O -0.530 6.530 20 O -0.510 6.510 21 H 0.067 0.933 22 H 0.045 0.955 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.024 0.976 28 H 0.256 0.744 29 H 0.099 0.901 30 H 0.027 0.973 31 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.898 7.613 -0.530 7.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.083 4.083 3 H 0.078 0.922 4 C -0.169 4.169 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.387 4.387 8 H 0.085 0.915 9 C -0.194 4.194 10 N -0.544 5.544 11 Si 0.734 3.266 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.058 3.942 16 C -0.127 4.127 17 H 0.118 0.882 18 C 0.334 3.666 19 O -0.419 6.419 20 O -0.320 6.320 21 H 0.086 0.914 22 H 0.064 0.936 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.117 0.883 30 H 0.045 0.955 31 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 0.815 7.507 -0.776 7.591 hybrid contribution 0.399 -0.310 0.758 0.911 sum 1.214 7.197 -0.018 7.298 Atomic orbital electron populations 1.22101 0.95195 1.02520 1.01796 1.20801 0.96460 0.97679 0.93371 0.92247 1.22065 1.00592 0.98246 0.95957 1.21006 0.96749 0.90906 0.89862 1.43978 1.66808 1.21030 0.99183 1.19147 1.19840 0.93278 1.06450 0.91457 1.25060 0.97031 0.97563 0.99764 1.70004 1.27705 1.38871 1.17845 0.86350 0.81258 0.81681 0.77358 1.20933 1.21595 1.20854 1.20753 0.96901 0.85083 0.91469 1.22001 1.02547 1.00305 0.87846 0.88225 1.23919 0.75939 0.82024 0.84762 1.90586 1.37429 1.26663 1.87271 1.84675 1.72709 1.57918 1.16740 0.91378 0.93629 0.91747 0.92242 0.92489 0.92714 0.95814 0.93393 0.88305 0.95468 0.74461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 8.13 37.16 0.30 -2.53 16 2 C -0.06 -1.15 2.35 -90.58 -0.21 -1.36 16 3 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 4 C -0.13 -2.25 5.63 -26.61 -0.15 -2.40 16 5 C 0.14 2.90 6.04 -3.71 -0.02 2.88 16 6 N -0.59 -14.43 2.99 -172.32 -0.52 -14.95 16 7 C -0.26 -6.93 9.59 -15.06 -0.14 -7.07 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 9 C 0.00 0.13 4.91 -17.43 -0.09 0.05 16 10 N -0.90 -25.72 11.19 55.49 0.62 -25.10 16 11 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.18 4.34 4.06 -3.71 -0.02 4.32 16 16 C -0.11 -2.07 2.56 -91.65 -0.23 -2.30 16 17 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 18 C 0.49 9.02 7.34 36.01 0.26 9.29 16 19 O -0.53 -10.25 14.51 -18.75 -0.27 -10.52 16 20 O -0.51 -8.31 13.35 -39.27 -0.52 -8.84 16 21 H 0.07 1.27 5.64 -51.93 -0.29 0.98 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 1.26 4.98 -51.93 -0.26 1.00 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 27 H 0.02 0.50 6.70 -51.93 -0.35 0.15 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 29 H 0.10 2.61 6.03 -51.93 -0.31 2.30 16 30 H 0.03 0.68 6.69 -51.93 -0.35 0.33 16 31 H 0.40 4.35 9.10 45.56 0.41 4.77 16 LS Contribution 247.46 15.07 3.73 3.73 Total: -1.00 -30.16 247.46 -5.51 -35.66 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -3.22 Total: 2.82 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.30 Total: 0.87 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.10 Total: -40.04 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.80 Total: -19.36 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.16 -5.51 -35.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575489137.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.536 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds