Wall clock time and date at job start Sun Mar 29 2020 21:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.45008 * 2 1 4 4 C 1.53042 * 109.46022 * 240.03774 * 2 1 3 5 5 C 1.53200 * 109.30934 * 301.34499 * 4 2 1 6 6 N 1.46921 * 108.77606 * 305.36403 * 5 4 2 7 7 C 1.36941 * 120.63196 * 233.63437 * 6 5 4 8 8 H 1.07999 * 120.00058 * 27.66388 * 7 6 5 9 9 C 1.38808 * 119.99762 * 207.66814 * 7 6 5 10 10 N 1.31620 * 120.00185 * 17.35489 * 9 7 6 11 11 Si 1.86807 * 119.99838 * 197.35706 * 9 7 6 12 12 H 1.48507 * 109.46873 * 60.00157 * 11 9 7 13 13 H 1.48497 * 109.46966 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47264 * 300.00175 * 11 9 7 15 15 C 1.46927 * 118.73904 * 53.61023 * 6 5 4 16 16 C 1.53040 * 109.46217 * 119.96866 * 2 1 3 17 17 H 1.08993 * 109.52505 * 178.62341 * 16 2 1 18 18 C 1.50699 * 109.49400 * 298.70542 * 16 2 1 19 19 O 1.20827 * 120.00090 * 359.83752 * 18 16 2 20 20 O 1.34235 * 119.99872 * 179.83324 * 18 16 2 21 21 H 1.08993 * 109.46982 * 300.03164 * 1 2 3 22 22 H 1.09003 * 109.46764 * 60.03271 * 1 2 3 23 23 H 1.08995 * 109.47001 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.50006 * 181.39393 * 4 2 1 25 25 H 1.08998 * 109.52848 * 61.30948 * 4 2 1 26 26 H 1.09001 * 109.58401 * 185.57677 * 5 4 2 27 27 H 1.09000 * 109.70355 * 65.22858 * 5 4 2 28 28 H 0.97009 * 119.99676 * 179.97438 * 10 9 7 29 29 H 1.08996 * 109.58800 * 186.60670 * 15 6 5 30 30 H 1.08995 * 109.58616 * 66.17724 * 15 6 5 31 31 H 0.96694 * 116.99676 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 1.4995 -2.1541 -1.2643 6 7 1.8625 -2.8089 -0.0002 7 6 2.5269 -4.0063 -0.0002 8 1 3.1688 -4.2677 -0.8285 9 6 2.3753 -4.8841 1.0644 10 7 1.3621 -4.7451 1.8928 11 14 3.6094 -6.2627 1.3212 12 1 4.9625 -5.6847 1.5227 13 1 3.2262 -7.0535 2.5183 14 1 3.6211 -7.1455 0.1271 15 6 1.4996 -2.1542 1.2641 16 6 2.0399 -0.7208 1.2500 17 1 3.1296 -0.7428 1.2388 18 6 1.5642 0.0082 2.4802 19 8 0.8891 1.0041 2.3690 20 8 1.8903 -0.4489 3.6994 21 1 -0.3633 0.5143 0.8896 22 1 -0.3633 0.5133 -0.8903 23 1 -0.3633 -1.0276 0.0005 24 1 3.1296 -0.7428 -1.2384 25 1 1.6963 -0.1936 -2.1402 26 1 1.9382 -2.7017 -2.0985 27 1 0.4147 -2.1369 -1.3687 28 1 1.2560 -5.3588 2.6366 29 1 1.9382 -2.7018 2.0983 30 1 0.4147 -2.1347 1.3672 31 1 1.5623 0.0524 4.4584 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575489137.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:00 Heat of formation + Delta-G solvation = -99.139804 kcal Electronic energy + Delta-G solvation = -15170.450620 eV Core-core repulsion = 12644.286913 eV Total energy + Delta-G solvation = -2526.163707 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.62447 -39.27391 -37.10924 -35.37966 -32.78700 -31.97709 -28.69909 -26.84228 -25.15635 -23.60370 -22.31597 -19.73695 -18.99258 -18.43917 -17.49872 -17.05022 -16.35604 -15.99107 -15.32992 -14.87712 -14.84021 -14.59488 -14.25197 -13.40734 -13.13836 -12.86872 -12.58957 -12.48218 -12.39091 -12.24368 -12.11384 -11.91596 -11.67278 -11.48450 -11.18948 -10.98180 -10.50883 -8.68548 -7.87425 -5.32691 1.21711 1.50056 1.52565 1.58901 2.24536 2.53638 3.28298 3.66820 3.81559 4.01445 4.12867 4.40472 4.51958 4.58102 4.68262 4.74262 4.90969 5.01853 5.13134 5.18426 5.20823 5.30370 5.44449 5.53371 5.65545 5.69431 5.73982 6.39157 7.07995 7.13390 7.83883 8.36579 9.19228 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033332 B = 0.011731 C = 0.009516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.820889 B = 2386.180456 C = 2941.669257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.063 4.063 3 H 0.079 0.921 4 C -0.118 4.118 5 C 0.135 3.865 6 N -0.606 5.606 7 C -0.267 4.267 8 H 0.071 0.929 9 C -0.047 4.047 10 N -0.933 5.933 11 Si 0.967 3.033 12 H -0.277 1.277 13 H -0.296 1.296 14 H -0.275 1.275 15 C 0.199 3.801 16 C -0.102 4.102 17 H 0.103 0.897 18 C 0.495 3.505 19 O -0.537 6.537 20 O -0.513 6.513 21 H 0.057 0.943 22 H 0.070 0.930 23 H 0.039 0.961 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.057 0.943 27 H 0.020 0.980 28 H 0.251 0.749 29 H 0.065 0.935 30 H 0.002 0.998 31 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 8.683 -1.288 8.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.081 4.081 3 H 0.097 0.903 4 C -0.156 4.156 5 C 0.011 3.989 6 N -0.329 5.329 7 C -0.397 4.397 8 H 0.089 0.911 9 C -0.243 4.243 10 N -0.579 5.579 11 Si 0.795 3.205 12 H -0.203 1.203 13 H -0.222 1.222 14 H -0.201 1.201 15 C 0.072 3.928 16 C -0.123 4.123 17 H 0.121 0.879 18 C 0.339 3.661 19 O -0.428 6.428 20 O -0.326 6.326 21 H 0.076 0.924 22 H 0.089 0.911 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.020 0.980 31 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 1.649 8.603 -1.538 8.894 hybrid contribution 0.099 -0.625 0.999 1.183 sum 1.748 7.978 -0.539 8.185 Atomic orbital electron populations 1.22009 0.95228 1.01066 1.02553 1.20847 0.96344 0.98410 0.92520 0.90271 1.21958 1.00675 0.95913 0.97097 1.21177 0.96696 0.92858 0.88219 1.44237 1.66941 1.20983 1.00740 1.19496 1.19662 0.94085 1.06408 0.91109 1.25798 0.98607 1.00044 0.99847 1.70161 1.29441 1.39889 1.18375 0.85358 0.79164 0.79013 0.77011 1.20292 1.22177 1.20090 1.20356 0.95125 0.87079 0.90198 1.21833 1.02632 0.98058 0.89784 0.87916 1.23584 0.75676 0.81724 0.85131 1.90584 1.37651 1.27017 1.87573 1.84616 1.72567 1.58318 1.17112 0.92370 0.91113 0.94208 0.91862 0.89141 0.92441 0.96237 0.93995 0.91695 0.97984 0.71658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 8.13 71.98 0.59 -4.55 16 2 C -0.06 -2.08 2.35 -10.76 -0.03 -2.11 16 3 H 0.08 2.40 8.07 -2.39 -0.02 2.38 16 4 C -0.12 -3.74 5.63 30.68 0.17 -3.57 16 5 C 0.14 5.42 6.04 86.37 0.52 5.94 16 6 N -0.61 -29.80 2.99 -699.09 -2.09 -31.89 16 7 C -0.27 -14.36 9.59 84.03 0.81 -13.55 16 8 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 9 C -0.05 -2.60 4.91 84.86 0.42 -2.18 16 10 N -0.93 -54.60 11.19 21.65 0.24 -54.36 16 11 Si 0.97 44.14 29.59 68.60 2.03 46.17 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 13 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 15 C 0.20 9.49 4.06 86.36 0.35 9.84 16 16 C -0.10 -3.88 2.56 -11.46 -0.03 -3.91 16 17 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 18 C 0.50 17.65 7.34 71.24 0.52 18.18 16 19 O -0.54 -19.87 14.51 21.96 0.32 -19.55 16 20 O -0.51 -16.16 13.35 -51.47 -0.69 -16.85 16 21 H 0.06 2.08 5.64 -2.39 -0.01 2.07 16 22 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.04 1.53 4.98 -2.39 -0.01 1.52 16 24 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16 27 H 0.02 0.80 6.70 -2.39 -0.02 0.79 16 28 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 29 H 0.06 3.53 6.03 -2.39 -0.01 3.51 16 30 H 0.00 0.11 6.69 -2.39 -0.02 0.10 16 31 H 0.42 8.52 9.10 -74.06 -0.67 7.84 16 Total: -1.00 -64.24 247.46 3.59 -60.64 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.47 Total: 11.74 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 3.32 Total: 4.09 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -1.85 Total: -86.25 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.37 Total: -36.40 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -64.24 3.59 -60.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575489137.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.498 kcal (2) G-P(sol) polarization free energy of solvation -64.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds