Wall clock time and date at job start Sun Mar 29 2020 21:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.45895 * 2 1 4 4 C 1.53036 * 109.45033 * 119.97000 * 2 1 3 5 5 C 1.52761 * 109.38418 * 181.24917 * 4 2 1 6 6 N 1.46922 * 109.01085 * 305.59137 * 5 4 2 7 7 C 1.36943 * 120.62725 * 233.58773 * 6 5 4 8 8 H 1.07996 * 120.00187 * 152.22373 * 7 6 5 9 9 C 1.38813 * 119.99684 * 332.21083 * 7 6 5 10 10 N 1.31611 * 120.00142 * 335.03857 * 9 7 6 11 11 Si 1.86800 * 119.99591 * 155.03469 * 9 7 6 12 12 H 1.48500 * 109.47333 * 60.00024 * 11 9 7 13 13 H 1.48504 * 109.47136 * 300.00426 * 11 9 7 14 14 H 1.48494 * 109.47269 * 180.02562 * 11 9 7 15 15 C 1.46928 * 118.74014 * 53.30497 * 6 5 4 16 16 C 1.53047 * 109.45615 * 240.03041 * 2 1 3 17 17 H 1.08998 * 109.52426 * 298.59357 * 16 2 1 18 18 C 1.50695 * 109.49937 * 58.67549 * 16 2 1 19 19 O 1.20823 * 119.99988 * 359.84067 * 18 16 2 20 20 O 1.34230 * 120.00146 * 179.83596 * 18 16 2 21 21 H 1.09002 * 109.47288 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47156 * 299.97118 * 1 2 3 23 23 H 1.08995 * 109.47446 * 59.96816 * 1 2 3 24 24 H 1.09001 * 109.49580 * 301.32984 * 4 2 1 25 25 H 1.09004 * 109.49837 * 61.39291 * 4 2 1 26 26 H 1.08995 * 109.50931 * 185.70163 * 5 4 2 27 27 H 1.09008 * 109.42744 * 65.42508 * 5 4 2 28 28 H 0.96996 * 120.00423 * 354.25179 * 10 9 7 29 29 H 1.08992 * 109.58822 * 66.43337 * 15 6 5 30 30 H 1.09000 * 109.58378 * 186.86017 * 15 6 5 31 31 H 0.96695 * 117.00327 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7209 1.2501 5 6 3.5669 -0.6928 1.2643 6 7 4.0676 -1.2493 0.0002 7 6 4.9752 -2.2748 0.0003 8 1 5.0098 -2.9654 -0.8293 9 6 5.8510 -2.4264 1.0666 10 7 6.1712 -1.3872 1.8080 11 14 6.5749 -4.1054 1.4491 12 1 7.3487 -4.5894 0.2777 13 1 5.4780 -5.0612 1.7469 14 1 7.4729 -4.0005 2.6271 15 6 3.5713 -0.6890 -1.2642 16 6 2.0398 -0.7209 -1.2501 17 1 1.6975 -1.7557 -1.2389 18 6 1.5110 -0.0295 -2.4803 19 8 0.7969 0.9388 -2.3691 20 8 1.8334 -0.4893 -3.6995 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5134 0.8903 23 1 -0.3634 0.5143 -0.8896 24 1 1.6570 -0.2208 2.1398 25 1 1.6968 -1.7555 1.2386 26 1 3.9342 -1.2912 2.0980 27 1 3.9096 0.3364 1.3717 28 1 5.8626 -0.5015 1.5608 29 1 3.9144 0.3404 -1.3673 30 1 3.9416 -1.2850 -2.0983 31 1 1.4706 -0.0126 -4.4585 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575489138.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:03 Heat of formation + Delta-G solvation = -84.464962 kcal Electronic energy + Delta-G solvation = -14956.909305 eV Core-core repulsion = 12431.381947 eV Total energy + Delta-G solvation = -2525.527358 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.35961 -37.72079 -35.96668 -33.96952 -31.29682 -30.33462 -27.54548 -24.26605 -23.60557 -21.70541 -20.67694 -19.14769 -17.81873 -17.46721 -16.19179 -15.48540 -14.18676 -14.15865 -13.85315 -13.60574 -13.47878 -13.13744 -12.47046 -12.11372 -11.92553 -11.47380 -11.16391 -10.85880 -10.82570 -10.69800 -10.29800 -10.27224 -10.05313 -9.94495 -9.64144 -9.27346 -8.41388 -6.96364 -6.10783 -3.27964 2.43401 3.31249 3.49004 3.52029 3.70161 4.56648 5.00417 5.17118 5.24945 5.37094 5.53025 5.69112 5.79668 5.88466 6.00287 6.12401 6.20023 6.31842 6.42627 6.50203 6.61024 6.65021 6.66123 6.83667 7.05063 7.17026 7.95924 8.12920 8.53607 9.05355 9.79804 10.22388 11.18148 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043065 B = 0.009338 C = 0.008332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.019341 B = 2997.886753 C = 3359.928548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.067 4.067 3 H 0.070 0.930 4 C -0.130 4.130 5 C 0.145 3.855 6 N -0.595 5.595 7 C -0.354 4.354 8 H 0.059 0.941 9 C -0.022 4.022 10 N -0.914 5.914 11 Si 1.065 2.935 12 H -0.292 1.292 13 H -0.293 1.293 14 H -0.285 1.285 15 C 0.161 3.839 16 C -0.094 4.094 17 H 0.105 0.895 18 C 0.487 3.513 19 O -0.521 6.521 20 O -0.515 6.515 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.018 0.982 28 H 0.270 0.730 29 H 0.021 0.979 30 H 0.069 0.931 31 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.899 1.159 -5.588 10.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.085 4.085 3 H 0.088 0.912 4 C -0.169 4.169 5 C 0.019 3.981 6 N -0.318 5.318 7 C -0.483 4.483 8 H 0.076 0.924 9 C -0.224 4.224 10 N -0.553 5.553 11 Si 0.895 3.105 12 H -0.219 1.219 13 H -0.220 1.220 14 H -0.211 1.211 15 C 0.034 3.966 16 C -0.115 4.115 17 H 0.123 0.877 18 C 0.330 3.670 19 O -0.410 6.410 20 O -0.326 6.326 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.920 0.343 -4.131 8.940 hybrid contribution -1.305 1.189 -1.713 2.459 sum -9.225 1.531 -5.844 11.027 Atomic orbital electron populations 1.22140 0.95596 1.01236 1.02770 1.20885 0.95169 0.99246 0.93237 0.91186 1.22078 0.99280 0.99956 0.95617 1.20960 0.89815 0.96849 0.90427 1.44104 1.48325 1.40499 0.98868 1.19984 1.13311 1.04942 1.10035 0.92358 1.25872 0.95144 1.04602 0.96803 1.70775 1.42308 0.99491 1.42749 0.83524 0.76010 0.74809 0.76181 1.21917 1.21991 1.21075 1.20771 0.87499 0.97146 0.91218 1.21818 1.01066 1.00415 0.88192 0.87678 1.23914 0.76539 0.81859 0.84650 1.90591 1.36060 1.27298 1.87060 1.84631 1.71429 1.59633 1.16872 0.93563 0.93075 0.90657 0.92327 0.92110 0.89938 0.96350 0.91949 0.96143 0.91302 0.74122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 8.85 37.16 0.33 -2.13 16 2 C -0.07 -1.17 1.88 -90.58 -0.17 -1.34 16 3 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 4 C -0.13 -2.44 5.34 -26.83 -0.14 -2.58 16 5 C 0.15 3.35 4.66 -3.93 -0.02 3.33 16 6 N -0.59 -14.68 2.86 -172.58 -0.49 -15.17 16 7 C -0.35 -9.71 9.49 -15.06 -0.14 -9.85 16 8 H 0.06 1.60 7.94 -52.49 -0.42 1.18 16 9 C -0.02 -0.61 4.68 -17.43 -0.08 -0.69 16 10 N -0.91 -27.01 12.41 55.49 0.69 -26.32 16 11 Si 1.07 24.84 29.99 -169.99 -5.10 19.74 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.16 3.38 5.73 -3.71 -0.02 3.36 16 16 C -0.09 -1.67 2.33 -91.65 -0.21 -1.88 16 17 H 0.11 1.87 8.14 -51.93 -0.42 1.44 16 18 C 0.49 7.88 7.34 36.00 0.26 8.14 16 19 O -0.52 -9.16 14.33 -18.75 -0.27 -9.43 16 20 O -0.51 -6.90 13.35 -39.26 -0.52 -7.42 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.07 1.21 5.40 -51.93 -0.28 0.93 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.08 2.12 6.30 -51.93 -0.33 1.80 16 27 H 0.02 0.44 7.87 -51.92 -0.41 0.03 16 28 H 0.27 8.04 6.71 -40.82 -0.27 7.76 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.44 7.93 -51.93 -0.41 1.03 16 31 H 0.40 3.34 9.10 45.56 0.41 3.76 16 LS Contribution 252.80 15.07 3.81 3.81 Total: -1.00 -30.93 252.80 -5.54 -36.47 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -3.46 Total: 1.98 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -0.20 Total: -3.65 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.20 Total: -41.49 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.79 Total: -16.85 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.10 Total: 19.74 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.93 -5.54 -36.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575489138.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.997 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds