Wall clock time and date at job start Sun Mar 29 2020 21:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.45895 * 2 1 4 4 C 1.53036 * 109.45033 * 119.97000 * 2 1 3 5 5 C 1.52761 * 109.38418 * 181.24917 * 4 2 1 6 6 N 1.46922 * 109.01085 * 305.59137 * 5 4 2 7 7 C 1.36943 * 120.62725 * 233.58773 * 6 5 4 8 8 H 1.07996 * 120.00187 * 152.22373 * 7 6 5 9 9 C 1.38813 * 119.99684 * 332.21083 * 7 6 5 10 10 N 1.31611 * 120.00142 * 335.03857 * 9 7 6 11 11 Si 1.86800 * 119.99591 * 155.03469 * 9 7 6 12 12 H 1.48500 * 109.47333 * 60.00024 * 11 9 7 13 13 H 1.48504 * 109.47136 * 300.00426 * 11 9 7 14 14 H 1.48494 * 109.47269 * 180.02562 * 11 9 7 15 15 C 1.46928 * 118.74014 * 53.30497 * 6 5 4 16 16 C 1.53047 * 109.45615 * 240.03041 * 2 1 3 17 17 H 1.08998 * 109.52426 * 298.59357 * 16 2 1 18 18 C 1.50695 * 109.49937 * 58.67549 * 16 2 1 19 19 O 1.20823 * 119.99988 * 359.84067 * 18 16 2 20 20 O 1.34230 * 120.00146 * 179.83596 * 18 16 2 21 21 H 1.09002 * 109.47288 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47156 * 299.97118 * 1 2 3 23 23 H 1.08995 * 109.47446 * 59.96816 * 1 2 3 24 24 H 1.09001 * 109.49580 * 301.32984 * 4 2 1 25 25 H 1.09004 * 109.49837 * 61.39291 * 4 2 1 26 26 H 1.08995 * 109.50931 * 185.70163 * 5 4 2 27 27 H 1.09008 * 109.42744 * 65.42508 * 5 4 2 28 28 H 0.96996 * 120.00423 * 354.25179 * 10 9 7 29 29 H 1.08992 * 109.58822 * 66.43337 * 15 6 5 30 30 H 1.09000 * 109.58378 * 186.86017 * 15 6 5 31 31 H 0.96695 * 117.00327 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7209 1.2501 5 6 3.5669 -0.6928 1.2643 6 7 4.0676 -1.2493 0.0002 7 6 4.9752 -2.2748 0.0003 8 1 5.0098 -2.9654 -0.8293 9 6 5.8510 -2.4264 1.0666 10 7 6.1712 -1.3872 1.8080 11 14 6.5749 -4.1054 1.4491 12 1 7.3487 -4.5894 0.2777 13 1 5.4780 -5.0612 1.7469 14 1 7.4729 -4.0005 2.6271 15 6 3.5713 -0.6890 -1.2642 16 6 2.0398 -0.7209 -1.2501 17 1 1.6975 -1.7557 -1.2389 18 6 1.5110 -0.0295 -2.4803 19 8 0.7969 0.9388 -2.3691 20 8 1.8334 -0.4893 -3.6995 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5134 0.8903 23 1 -0.3634 0.5143 -0.8896 24 1 1.6570 -0.2208 2.1398 25 1 1.6968 -1.7555 1.2386 26 1 3.9342 -1.2912 2.0980 27 1 3.9096 0.3364 1.3717 28 1 5.8626 -0.5015 1.5608 29 1 3.9144 0.3404 -1.3673 30 1 3.9416 -1.2850 -2.0983 31 1 1.4706 -0.0126 -4.4585 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575489138.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:03 Heat of formation + Delta-G solvation = -104.880930 kcal Electronic energy + Delta-G solvation = -14957.794608 eV Core-core repulsion = 12431.381947 eV Total energy + Delta-G solvation = -2526.412661 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.68180 -39.29641 -37.23104 -35.73294 -33.04696 -32.07997 -29.15962 -26.10243 -25.20905 -23.15485 -22.34741 -20.68948 -19.45922 -19.00501 -17.60757 -16.86122 -16.00772 -15.93378 -15.42478 -15.22277 -15.16129 -14.55147 -14.03781 -13.68646 -13.41900 -12.90577 -12.69808 -12.52958 -12.39182 -12.29992 -11.88591 -11.85262 -11.82230 -11.63512 -11.23398 -10.98994 -10.47318 -8.99638 -8.26789 -5.42764 1.13990 1.61241 1.68321 1.87215 2.11132 2.66883 3.21173 3.47996 3.60582 3.83820 3.97632 4.22415 4.33933 4.51669 4.53933 4.60704 4.81263 4.81980 4.90216 4.94201 5.12753 5.14599 5.22470 5.32917 5.47340 5.68150 5.83355 6.37756 7.00672 7.01202 7.74088 8.17328 8.99208 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043065 B = 0.009338 C = 0.008332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.019341 B = 2997.886753 C = 3359.928548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.064 4.064 3 H 0.058 0.942 4 C -0.118 4.118 5 C 0.150 3.850 6 N -0.613 5.613 7 C -0.359 4.359 8 H 0.056 0.944 9 C -0.073 4.073 10 N -0.941 5.941 11 Si 1.115 2.885 12 H -0.275 1.275 13 H -0.278 1.278 14 H -0.293 1.293 15 C 0.161 3.839 16 C -0.088 4.088 17 H 0.110 0.890 18 C 0.498 3.502 19 O -0.534 6.534 20 O -0.510 6.510 21 H 0.057 0.943 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.004 0.996 28 H 0.254 0.746 29 H 0.013 0.987 30 H 0.066 0.934 31 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.289 0.474 -6.404 12.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 H 0.077 0.923 4 C -0.156 4.156 5 C 0.024 3.976 6 N -0.337 5.337 7 C -0.488 4.488 8 H 0.074 0.926 9 C -0.270 4.270 10 N -0.582 5.582 11 Si 0.940 3.060 12 H -0.201 1.201 13 H -0.204 1.204 14 H -0.219 1.219 15 C 0.035 3.965 16 C -0.109 4.109 17 H 0.127 0.873 18 C 0.341 3.659 19 O -0.424 6.424 20 O -0.323 6.323 21 H 0.076 0.924 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.084 0.916 31 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -9.344 -0.329 -5.004 10.605 hybrid contribution -0.862 1.447 -1.560 2.296 sum -10.206 1.118 -6.564 12.186 Atomic orbital electron populations 1.22034 0.93253 1.02140 1.03302 1.20836 0.96948 0.98167 0.92286 0.92331 1.21925 0.95639 1.00587 0.97482 1.20841 0.92784 0.95069 0.88879 1.44322 1.48410 1.40489 1.00501 1.20248 1.13381 1.05352 1.09858 0.92595 1.27227 0.95759 1.06959 0.97013 1.70896 1.44159 0.99334 1.43850 0.82854 0.75764 0.71272 0.76147 1.20109 1.20374 1.21931 1.20792 0.89864 0.96266 0.89574 1.21586 0.98358 1.01151 0.89763 0.87251 1.23335 0.76227 0.81286 0.85026 1.90600 1.36720 1.27643 1.87435 1.84557 1.71153 1.59730 1.16887 0.92439 0.91612 0.91086 0.90127 0.92014 0.93139 0.97832 0.93595 0.96883 0.91568 0.71197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.16 8.85 71.98 0.64 -3.52 16 2 C -0.06 -2.12 1.88 -10.77 -0.02 -2.14 16 3 H 0.06 2.09 8.13 -2.39 -0.02 2.07 16 4 C -0.12 -4.26 5.34 30.53 0.16 -4.09 16 5 C 0.15 7.02 4.66 86.22 0.40 7.42 16 6 N -0.61 -30.53 2.86 -699.93 -2.00 -32.53 16 7 C -0.36 -19.82 9.49 84.03 0.80 -19.02 16 8 H 0.06 3.06 7.94 -2.91 -0.02 3.03 16 9 C -0.07 -4.11 4.68 84.86 0.40 -3.71 16 10 N -0.94 -57.00 12.41 21.65 0.27 -56.73 16 11 Si 1.12 50.10 29.99 68.60 2.06 52.15 16 12 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 13 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 14 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 15 C 0.16 6.71 5.73 86.36 0.49 7.21 16 16 C -0.09 -2.98 2.33 -11.46 -0.03 -3.01 16 17 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 18 C 0.50 14.95 7.34 71.23 0.52 15.47 16 19 O -0.53 -17.47 14.33 21.97 0.31 -17.16 16 20 O -0.51 -12.23 13.35 -51.42 -0.69 -12.91 16 21 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.07 2.08 5.40 -2.39 -0.01 2.06 16 24 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 26 H 0.05 2.67 6.30 -2.39 -0.02 2.66 16 27 H 0.00 0.18 7.87 -2.38 -0.02 0.16 16 28 H 0.25 15.74 6.71 -92.71 -0.62 15.12 16 29 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 2.74 7.93 -2.39 -0.02 2.72 16 31 H 0.43 5.69 9.10 -74.06 -0.67 5.02 16 Total: -1.00 -66.20 252.80 3.92 -62.28 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.60 Total: 10.29 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 3.37 Total: -5.39 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -1.73 Total: -89.26 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.37 Total: -30.07 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 2.06 Total: 52.15 kcal Total: -66.20 3.92 -62.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575489138.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.601 kcal (2) G-P(sol) polarization free energy of solvation -66.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds