Wall clock time and date at job start Sun Mar 29 2020 22:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47364 * 2 1 4 4 C 1.53002 * 109.47223 * 239.99362 * 2 1 3 5 5 C 1.50699 * 109.46949 * 64.04359 * 4 2 1 6 6 H 1.08004 * 120.00085 * 5.12482 * 5 4 2 7 7 C 1.37881 * 120.00320 * 185.12097 * 5 4 2 8 8 N 1.31508 * 119.99800 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00112 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.46880 * 90.00088 * 9 7 5 11 11 H 1.48507 * 109.46789 * 209.99958 * 9 7 5 12 12 H 1.48494 * 109.47068 * 329.99860 * 9 7 5 13 13 N 1.46900 * 109.47168 * 119.99884 * 2 1 3 14 14 C 1.47233 * 110.99803 * 294.96490 * 13 2 1 15 15 C 1.53091 * 108.48311 * 167.70560 * 14 13 2 16 16 C 1.50308 * 109.71634 * 49.00528 * 15 14 13 17 17 C 1.30141 * 122.85027 * 343.49791 * 16 15 14 18 18 F 1.35103 * 118.38128 * 180.34247 * 17 16 15 19 19 C 1.46993 * 110.96136 * 172.23748 * 13 2 1 20 20 H 1.08998 * 109.47364 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46937 * 300.00515 * 1 2 3 22 22 H 1.08997 * 109.46644 * 60.00183 * 1 2 3 23 23 H 1.08994 * 109.47260 * 184.04033 * 4 2 1 24 24 H 1.09001 * 109.47372 * 304.04865 * 4 2 1 25 25 H 0.97002 * 120.00213 * 180.02562 * 8 7 5 26 26 H 1.08996 * 109.63876 * 48.00450 * 14 13 2 27 27 H 1.09009 * 109.63400 * 287.40018 * 14 13 2 28 28 H 1.09001 * 109.42938 * 288.92829 * 15 14 13 29 29 H 1.09004 * 109.42448 * 169.08125 * 15 14 13 30 30 H 1.07998 * 118.57412 * 163.47357 * 16 15 14 31 31 H 1.09001 * 109.52967 * 54.27181 * 19 13 2 32 32 H 1.08994 * 109.23084 * 294.71247 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6212 0.0444 -2.4776 6 1 1.1210 0.9962 -2.3762 7 6 1.8765 -0.4700 -3.7312 8 7 2.4852 -1.6292 -3.8547 9 14 1.3566 0.4789 -5.2539 10 1 2.4572 1.3834 -5.6731 11 1 1.0539 -0.4742 -6.3517 12 1 0.1456 1.2817 -4.9473 13 7 2.0197 -0.6925 1.1994 14 6 1.6486 0.0413 2.4207 15 6 1.9058 -0.8642 3.6280 16 6 3.2848 -1.4546 3.5344 17 6 3.9758 -1.4630 2.4316 18 9 5.2046 -2.0244 2.4479 19 6 3.4772 -0.8742 1.1435 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 3.1276 -0.7845 -1.2137 24 1 1.6187 -1.7260 -1.2861 25 1 2.6652 -1.9910 -4.7365 26 1 0.5925 0.3080 2.3813 27 1 2.2543 0.9438 2.5041 28 1 1.1680 -1.6665 3.6433 29 1 1.8232 -0.2792 4.5441 30 1 3.7214 -1.8905 4.4209 31 1 3.9585 0.0895 0.9770 32 1 3.7240 -1.5451 0.3207 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591022880.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:04 Heat of formation + Delta-G solvation = -35.578778 kcal Electronic energy + Delta-G solvation = -14427.654804 eV Core-core repulsion = 11916.620100 eV Total energy + Delta-G solvation = -2511.034704 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.57324 -38.78895 -34.78686 -32.52417 -30.48083 -29.93945 -26.98265 -24.44173 -23.80046 -22.07703 -19.40138 -18.23226 -16.89774 -16.13535 -15.47862 -15.42241 -14.65913 -14.52413 -14.23249 -13.41673 -13.29946 -12.74223 -12.49124 -12.00284 -11.94436 -11.49632 -11.32659 -11.20486 -10.88804 -10.76830 -10.37565 -10.32011 -9.94855 -9.23680 -9.12539 -8.63240 -8.35994 -7.85853 -6.01714 -4.03899 2.13326 3.30660 3.37366 3.39842 4.14857 4.44984 4.66910 4.83131 5.17696 5.33860 5.50527 5.54637 5.61234 5.74466 5.88412 6.00715 6.08360 6.18029 6.22275 6.29030 6.52794 6.63353 6.75827 6.90449 7.08219 7.46485 7.48048 7.68976 7.81853 8.02338 8.39694 9.01971 9.59530 11.09594 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042964 B = 0.007705 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.546159 B = 3633.069801 C = 4136.761717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.084 3.916 3 H 0.030 0.970 4 C 0.027 3.973 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.523 5.523 14 C 0.039 3.961 15 C -0.068 4.068 16 C -0.204 4.204 17 C 0.062 3.938 18 F -0.154 7.154 19 C 0.072 3.928 20 H 0.056 0.944 21 H 0.032 0.968 22 H 0.068 0.932 23 H 0.015 0.985 24 H 0.030 0.970 25 H 0.261 0.739 26 H 0.084 0.916 27 H 0.033 0.967 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.055 0.945 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 2.356 12.477 12.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.023 4.023 3 H 0.048 0.952 4 C -0.011 4.011 5 C -0.557 4.557 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.531 5.531 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.248 5.248 14 C -0.090 4.090 15 C -0.106 4.106 16 C -0.224 4.224 17 C 0.042 3.958 18 F -0.133 7.133 19 C -0.056 4.056 20 H 0.075 0.925 21 H 0.051 0.949 22 H 0.087 0.913 23 H 0.033 0.967 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.051 0.949 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.131 0.869 31 H 0.073 0.927 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.879 1.741 12.344 12.497 hybrid contribution 0.490 1.079 -0.886 1.480 sum -0.390 2.819 11.458 11.806 Atomic orbital electron populations 1.21728 0.94795 1.01809 1.00168 1.21906 0.95448 0.95280 0.89641 0.95196 1.19251 0.96026 0.96476 0.89303 1.21159 1.38388 1.05416 0.90768 0.92615 1.24992 0.95275 0.94953 0.99080 1.69962 1.41771 1.17964 1.23447 0.86610 0.78930 0.79699 0.82855 1.20750 1.21216 1.19876 1.62607 1.09653 1.49681 1.02847 1.22341 1.01542 0.94642 0.90434 1.20315 0.93453 0.99087 0.97696 1.22239 0.98164 1.04956 0.97040 1.19483 0.80852 0.98486 0.96952 1.91466 1.41517 1.83072 1.97268 1.21210 0.89599 1.00636 0.94138 0.92520 0.94865 0.91293 0.96703 0.95135 0.92961 0.89747 0.94910 0.89960 0.90849 0.86886 0.92718 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.93 37.16 0.33 -2.04 16 2 C 0.08 1.71 2.08 -67.71 -0.14 1.57 16 3 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 4 C 0.03 0.67 4.10 -27.88 -0.11 0.56 16 5 C -0.52 -14.21 8.30 -34.44 -0.29 -14.49 16 6 H 0.06 1.48 7.19 -52.48 -0.38 1.10 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.52 -9.45 4.59 -228.00 -1.05 -10.49 16 14 C 0.04 0.56 5.45 -3.59 -0.02 0.54 16 15 C -0.07 -0.85 6.32 -28.03 -0.18 -1.02 16 16 C -0.20 -2.86 9.84 -35.97 -0.35 -3.21 16 17 C 0.06 1.00 7.27 -36.05 -0.26 0.74 16 18 F -0.15 -2.59 17.20 2.25 0.04 -2.55 16 19 C 0.07 1.30 4.83 -5.19 -0.03 1.28 16 20 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 21 H 0.03 0.51 6.30 -51.93 -0.33 0.19 16 22 H 0.07 1.35 6.99 -51.93 -0.36 0.99 16 23 H 0.01 0.39 6.19 -51.93 -0.32 0.07 16 24 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.08 1.14 6.00 -51.93 -0.31 0.83 16 27 H 0.03 0.47 8.08 -51.92 -0.42 0.05 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 32 H 0.11 2.18 6.43 -51.93 -0.33 1.85 16 LS Contribution 260.88 15.07 3.93 3.93 Total: -1.00 -28.99 260.88 -7.05 -36.04 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -4.55 Total: -2.98 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -1.14 Total: -14.53 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.31 Total: -36.26 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.99 -7.05 -36.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591022880.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.466 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds