Wall clock time and date at job start Sun Mar 29 2020 22:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50705 * 109.47390 * 184.99865 * 4 2 1 6 6 H 1.08000 * 119.99498 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00441 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47080 * 89.99765 * 9 7 5 11 11 H 1.48497 * 109.46846 * 209.99784 * 9 7 5 12 12 H 1.48499 * 109.47093 * 329.99702 * 9 7 5 13 13 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 14 14 C 1.47241 * 110.99983 * 68.99103 * 13 2 1 15 15 C 1.53073 * 108.48909 * 167.72077 * 14 13 2 16 16 C 1.50313 * 109.72427 * 48.98637 * 15 14 13 17 17 C 1.30136 * 122.84886 * 343.52521 * 16 15 14 18 18 F 1.35101 * 118.37690 * 180.32405 * 17 16 15 19 19 C 1.46847 * 111.00044 * 306.04694 * 13 2 1 20 20 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 24 24 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 25 25 H 0.97002 * 119.99729 * 180.02562 * 8 7 5 26 26 H 1.08995 * 109.63314 * 287.40261 * 14 13 2 27 27 H 1.08994 * 109.63061 * 48.01388 * 14 13 2 28 28 H 1.08993 * 109.41604 * 288.90974 * 15 14 13 29 29 H 1.09000 * 109.39407 * 169.04105 * 15 14 13 30 30 H 1.07997 * 118.57432 * 163.50928 * 16 15 14 31 31 H 1.09003 * 109.33534 * 294.61966 * 19 13 2 32 32 H 1.09000 * 109.33352 * 54.12346 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3129 6 1 4.0789 -0.0856 0.5397 7 6 4.2304 -1.1935 2.3579 8 7 3.5763 -1.8378 3.2996 9 14 6.0920 -1.0612 2.4370 10 1 6.4698 0.1610 3.1912 11 1 6.6445 -2.2568 3.1229 12 1 6.6416 -0.9826 1.0597 13 7 2.0198 -0.6925 -1.1994 14 6 1.7310 0.0879 -2.4141 15 6 2.5209 -0.5157 -3.5781 16 6 2.3149 -2.0043 -3.6131 17 6 1.8369 -2.6746 -2.6052 18 9 1.6953 -4.0121 -2.7329 19 6 1.4346 -2.0350 -1.3078 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.6053 -0.2617 2.1370 24 1 1.7516 -1.7715 1.2056 25 1 4.0607 -2.2445 4.0350 26 1 0.6643 0.0430 -2.6334 27 1 2.0339 1.1242 -2.2642 28 1 3.5811 -0.2993 -3.4474 29 1 2.1747 -0.0797 -4.5152 30 1 2.5745 -2.5407 -4.5137 31 1 1.7850 -2.6494 -0.4784 32 1 0.3481 -1.9597 -1.2641 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591022881.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:07 Heat of formation + Delta-G solvation = -32.041143 kcal Electronic energy + Delta-G solvation = -14660.568149 eV Core-core repulsion = 12149.686848 eV Total energy + Delta-G solvation = -2510.881301 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.49472 -38.88340 -34.70844 -32.43097 -30.15499 -29.67918 -27.33991 -24.71483 -23.34566 -22.26936 -19.59575 -17.75829 -16.79729 -16.18885 -15.43542 -15.31074 -14.47578 -14.40414 -14.03179 -13.74393 -13.21324 -12.63573 -12.54404 -12.14048 -11.76088 -11.58180 -11.29869 -11.14495 -10.83901 -10.67904 -10.53690 -10.27706 -10.02335 -9.20879 -9.00878 -8.51396 -8.26888 -7.62050 -5.89447 -3.87610 2.23139 3.39377 3.45783 3.51025 4.26909 4.56670 4.74087 4.91405 5.27392 5.47698 5.53946 5.59170 5.67157 5.70677 5.80678 5.89374 5.96706 6.11304 6.18427 6.26690 6.46140 6.60339 6.65384 6.88460 6.91870 7.47163 7.56947 7.79928 7.93246 8.10931 8.55610 9.18186 9.74517 11.22471 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028091 B = 0.009762 C = 0.008985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.510763 B = 2867.439767 C = 3115.397692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.086 3.914 3 H 0.076 0.924 4 C 0.028 3.972 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.499 5.499 14 C 0.042 3.958 15 C -0.069 4.069 16 C -0.204 4.204 17 C 0.062 3.938 18 F -0.156 7.156 19 C 0.071 3.929 20 H 0.054 0.946 21 H 0.059 0.941 22 H 0.041 0.959 23 H 0.021 0.979 24 H 0.018 0.982 25 H 0.258 0.742 26 H 0.031 0.969 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 2.339 -11.447 12.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.021 4.021 3 H 0.094 0.906 4 C -0.009 4.009 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.544 5.544 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.223 5.223 14 C -0.086 4.086 15 C -0.106 4.106 16 C -0.223 4.223 17 C 0.043 3.957 18 F -0.135 7.135 19 C -0.057 4.057 20 H 0.073 0.927 21 H 0.078 0.922 22 H 0.060 0.940 23 H 0.039 0.961 24 H 0.036 0.964 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.485 2.145 -11.238 12.288 hybrid contribution 0.177 -0.283 -0.001 0.334 sum -4.307 1.862 -11.238 12.179 Atomic orbital electron populations 1.22556 0.99598 1.01451 1.01028 1.22005 0.90194 0.98503 0.91428 0.90590 1.19215 0.96527 0.95343 0.89788 1.21161 0.91710 1.33145 1.07075 0.92088 1.25004 0.98084 0.95793 0.95982 1.69961 1.35276 1.36841 1.12325 0.86628 0.86327 0.77216 0.78030 1.20985 1.21554 1.19869 1.62523 1.57506 1.00508 1.01742 1.22284 0.97176 0.98160 0.91013 1.20308 1.01714 0.90833 0.97741 1.22215 1.04044 0.97819 0.98254 1.19454 1.02303 0.76831 0.97108 1.91455 1.93933 1.31756 1.96329 1.21205 0.97580 0.92643 0.94285 0.92712 0.92156 0.93972 0.96099 0.96363 0.93288 0.95061 0.90350 0.89807 0.91017 0.87003 0.87411 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 8.44 37.16 0.31 -2.77 16 2 C 0.09 1.70 2.26 -67.71 -0.15 1.55 16 3 H 0.08 1.50 7.94 -51.93 -0.41 1.09 16 4 C 0.03 0.71 4.36 -27.88 -0.12 0.58 16 5 C -0.49 -13.69 8.84 -34.44 -0.30 -14.00 16 6 H 0.06 1.69 7.74 -52.49 -0.41 1.29 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 9 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 13 N -0.50 -9.36 4.39 -228.13 -1.00 -10.36 16 14 C 0.04 0.63 5.06 -3.60 -0.02 0.61 16 15 C -0.07 -0.92 6.32 -28.03 -0.18 -1.10 16 16 C -0.20 -3.05 9.84 -35.97 -0.35 -3.41 16 17 C 0.06 1.07 7.27 -36.05 -0.26 0.80 16 18 F -0.16 -2.73 17.20 2.25 0.04 -2.69 16 19 C 0.07 1.29 4.88 -5.27 -0.03 1.27 16 20 H 0.05 0.90 6.20 -51.93 -0.32 0.58 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.04 0.60 6.95 -51.93 -0.36 0.24 16 23 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.02 0.48 6.45 -51.93 -0.33 0.15 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.03 0.44 7.14 -51.93 -0.37 0.07 16 27 H 0.08 1.10 7.92 -51.93 -0.41 0.69 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.11 2.26 6.62 -51.93 -0.34 1.92 16 32 H 0.05 0.92 5.86 -51.93 -0.30 0.61 16 LS Contribution 260.19 15.07 3.92 3.92 Total: -1.00 -29.70 260.19 -7.04 -36.74 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -4.51 Total: -3.15 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -1.20 Total: -15.10 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.27 Total: -36.81 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.04 Total: -2.69 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.70 -7.04 -36.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591022881.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.702 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds