Wall clock time and date at job start Sun Mar 29 2020 22:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50705 * 109.47390 * 184.99865 * 4 2 1 6 6 H 1.08000 * 119.99498 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00441 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47080 * 89.99765 * 9 7 5 11 11 H 1.48497 * 109.46846 * 209.99784 * 9 7 5 12 12 H 1.48499 * 109.47093 * 329.99702 * 9 7 5 13 13 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 14 14 C 1.47241 * 110.99983 * 68.99103 * 13 2 1 15 15 C 1.53073 * 108.48909 * 167.72077 * 14 13 2 16 16 C 1.50313 * 109.72427 * 48.98637 * 15 14 13 17 17 C 1.30136 * 122.84886 * 343.52521 * 16 15 14 18 18 F 1.35101 * 118.37690 * 180.32405 * 17 16 15 19 19 C 1.46847 * 111.00044 * 306.04694 * 13 2 1 20 20 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 24 24 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 25 25 H 0.97002 * 119.99729 * 180.02562 * 8 7 5 26 26 H 1.08995 * 109.63314 * 287.40261 * 14 13 2 27 27 H 1.08994 * 109.63061 * 48.01388 * 14 13 2 28 28 H 1.08993 * 109.41604 * 288.90974 * 15 14 13 29 29 H 1.09000 * 109.39407 * 169.04105 * 15 14 13 30 30 H 1.07997 * 118.57432 * 163.50928 * 16 15 14 31 31 H 1.09003 * 109.33534 * 294.61966 * 19 13 2 32 32 H 1.09000 * 109.33352 * 54.12346 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3129 6 1 4.0789 -0.0856 0.5397 7 6 4.2304 -1.1935 2.3579 8 7 3.5763 -1.8378 3.2996 9 14 6.0920 -1.0612 2.4370 10 1 6.4698 0.1610 3.1912 11 1 6.6445 -2.2568 3.1229 12 1 6.6416 -0.9826 1.0597 13 7 2.0198 -0.6925 -1.1994 14 6 1.7310 0.0879 -2.4141 15 6 2.5209 -0.5157 -3.5781 16 6 2.3149 -2.0043 -3.6131 17 6 1.8369 -2.6746 -2.6052 18 9 1.6953 -4.0121 -2.7329 19 6 1.4346 -2.0350 -1.3078 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.6053 -0.2617 2.1370 24 1 1.7516 -1.7715 1.2056 25 1 4.0607 -2.2445 4.0350 26 1 0.6643 0.0430 -2.6334 27 1 2.0339 1.1242 -2.2642 28 1 3.5811 -0.2993 -3.4474 29 1 2.1747 -0.0797 -4.5152 30 1 2.5745 -2.5407 -4.5137 31 1 1.7850 -2.6494 -0.4784 32 1 0.3481 -1.9597 -1.2641 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591022881.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:07 Heat of formation + Delta-G solvation = -50.571351 kcal Electronic energy + Delta-G solvation = -14661.371679 eV Core-core repulsion = 12149.686848 eV Total energy + Delta-G solvation = -2511.684831 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.79840 -40.26399 -36.23110 -34.44294 -31.41697 -31.21953 -29.14559 -26.11215 -25.11371 -23.70336 -21.14786 -19.06390 -18.35827 -18.12284 -16.83016 -16.68203 -16.34974 -15.70465 -15.50110 -15.11548 -14.77178 -14.13475 -13.89578 -13.80186 -13.39385 -13.07792 -12.85954 -12.62020 -12.51643 -12.39116 -12.09435 -11.94277 -11.63057 -11.10790 -10.97365 -10.48130 -9.75109 -9.02223 -8.09963 -6.14701 0.99012 1.41668 1.43182 1.54196 2.47621 2.89774 3.25181 3.46867 3.72216 4.12230 4.18642 4.27980 4.39340 4.45403 4.53250 4.57857 4.64901 4.92035 4.96337 5.01572 5.13756 5.20739 5.24955 5.42680 5.47060 5.64617 5.74361 5.89560 6.26189 6.32747 6.48996 6.99603 7.51380 9.02073 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028091 B = 0.009762 C = 0.008985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.510763 B = 2867.439767 C = 3115.397692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.095 3.905 3 H 0.078 0.922 4 C 0.033 3.967 5 C -0.499 4.499 6 H 0.060 0.940 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.267 1.267 13 N -0.522 5.522 14 C 0.040 3.960 15 C -0.069 4.069 16 C -0.178 4.178 17 C 0.026 3.974 18 F -0.165 7.165 19 C 0.078 3.922 20 H 0.049 0.951 21 H 0.061 0.939 22 H 0.072 0.928 23 H -0.004 1.004 24 H -0.008 1.008 25 H 0.258 0.742 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.134 0.866 31 H 0.064 0.936 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.650 3.653 -13.681 14.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.013 4.013 3 H 0.096 0.904 4 C -0.005 4.005 5 C -0.538 4.538 6 H 0.079 0.921 7 C -0.203 4.203 8 N -0.583 5.583 9 Si 0.781 3.219 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.192 1.192 13 N -0.246 5.246 14 C -0.088 4.088 15 C -0.106 4.106 16 C -0.197 4.197 17 C 0.007 3.993 18 F -0.144 7.144 19 C -0.050 4.050 20 H 0.068 0.932 21 H 0.080 0.920 22 H 0.090 0.910 23 H 0.014 0.986 24 H 0.010 0.990 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.130 0.870 30 H 0.152 0.848 31 H 0.083 0.917 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.104 3.473 -13.490 14.522 hybrid contribution 0.052 -0.673 0.649 0.936 sum -4.052 2.800 -12.841 13.753 Atomic orbital electron populations 1.22425 0.96990 1.01648 1.02573 1.21700 0.92259 0.97535 0.89801 0.90369 1.19083 0.95317 0.94255 0.91804 1.21515 0.93275 1.32343 1.06656 0.92146 1.25866 1.02888 0.95679 0.95829 1.70095 1.37085 1.38054 1.13071 0.85584 0.80664 0.77360 0.78247 1.19899 1.21542 1.19160 1.62386 1.58343 1.01005 1.02888 1.22432 0.98521 0.98267 0.89542 1.20451 1.01542 0.89653 0.98918 1.22621 1.00359 0.98822 0.97901 1.19442 1.05618 0.76840 0.97429 1.91428 1.94332 1.32318 1.96336 1.20980 0.98063 0.92175 0.93771 0.93201 0.92005 0.90960 0.98616 0.98971 0.93343 0.93497 0.89125 0.89921 0.86958 0.84820 0.91723 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.62 8.44 71.98 0.61 -5.01 16 2 C 0.09 3.70 2.26 44.92 0.10 3.80 16 3 H 0.08 3.00 7.94 -2.39 -0.02 2.98 16 4 C 0.03 1.68 4.36 29.85 0.13 1.81 16 5 C -0.50 -28.26 8.84 25.60 0.23 -28.04 16 6 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 7 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 8 N -0.94 -58.22 13.29 21.44 0.28 -57.93 16 9 Si 0.96 45.74 29.54 68.60 2.03 47.76 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 N -0.52 -19.04 4.39 -875.68 -3.84 -22.89 16 14 C 0.04 1.05 5.06 86.26 0.44 1.49 16 15 C -0.07 -1.57 6.32 29.75 0.19 -1.38 16 16 C -0.18 -4.79 9.84 26.42 0.26 -4.53 16 17 C 0.03 0.86 7.27 26.37 0.19 1.05 16 18 F -0.16 -5.77 17.20 44.97 0.77 -5.00 16 19 C 0.08 2.88 4.88 85.39 0.42 3.30 16 20 H 0.05 1.61 6.20 -2.39 -0.01 1.60 16 21 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 22 H 0.07 1.86 6.95 -2.39 -0.02 1.84 16 23 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 24 H -0.01 -0.45 6.45 -2.39 -0.02 -0.47 16 25 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 26 H 0.05 1.12 7.14 -2.39 -0.02 1.10 16 27 H 0.09 2.20 7.92 -2.39 -0.02 2.18 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.13 3.03 8.06 -2.91 -0.02 3.00 16 31 H 0.06 2.89 6.62 -2.39 -0.02 2.87 16 32 H 0.06 2.16 5.86 -2.39 -0.01 2.14 16 Total: -1.00 -65.10 260.19 3.36 -61.74 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 1.10 Total: 3.74 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: 3.02 Total: -27.43 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -3.56 Total: -80.82 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.77 Total: -5.00 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -65.10 3.36 -61.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591022881.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.170 kcal (2) G-P(sol) polarization free energy of solvation -65.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds