Wall clock time and date at job start Sun Mar 29 2020 22:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46749 * 2 1 4 4 C 1.53006 * 109.88270 * 302.79215 * 3 2 1 5 5 O 1.42893 * 109.47323 * 177.35452 * 4 3 2 6 6 C 1.54315 * 110.02677 * 63.90692 * 3 2 1 7 7 C 1.55145 * 103.02107 * 97.19547 * 6 3 2 8 8 C 1.54908 * 101.64944 * 35.65660 * 7 6 3 9 9 N 1.47441 * 109.89190 * 181.75796 * 3 2 1 10 10 C 1.46902 * 111.00172 * 117.17149 * 9 3 2 11 11 C 1.50702 * 109.47049 * 192.72957 * 10 9 3 12 12 H 1.07998 * 120.00409 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99897 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99887 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47206 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47427 * 120.00198 * 15 13 11 18 18 H 1.48501 * 109.47187 * 240.00124 * 15 13 11 19 19 H 1.09005 * 109.46741 * 176.62030 * 1 2 3 20 20 H 1.09001 * 109.47019 * 296.61029 * 1 2 3 21 21 H 1.08998 * 109.47842 * 56.61951 * 1 2 3 22 22 H 1.09002 * 109.47043 * 240.00612 * 2 1 3 23 23 H 1.08996 * 109.47561 * 120.00230 * 2 1 3 24 24 H 1.09003 * 109.46429 * 297.35428 * 4 3 2 25 25 H 1.08996 * 109.47158 * 57.35182 * 4 3 2 26 26 H 0.96706 * 113.99974 * 179.97438 * 5 4 3 27 27 H 1.08996 * 110.71374 * 215.58005 * 6 3 2 28 28 H 1.09003 * 110.70831 * 338.81905 * 6 3 2 29 29 H 1.08998 * 110.99275 * 277.57002 * 7 6 3 30 30 H 1.09001 * 111.02499 * 153.76362 * 7 6 3 31 31 H 1.09006 * 110.37524 * 204.10184 * 8 7 6 32 32 H 1.09007 * 110.46751 * 81.80731 * 8 7 6 33 33 H 1.09000 * 109.47137 * 312.73098 * 10 9 3 34 34 H 1.09004 * 109.46775 * 72.72916 * 10 9 3 35 35 H 0.97003 * 119.99874 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4786 2.1928 -1.2096 5 8 1.9100 3.5544 -1.1677 6 6 1.6148 2.1533 1.3021 7 6 2.8745 2.0236 2.1984 8 6 4.0140 2.1572 1.1576 9 7 3.5136 1.4536 -0.0425 10 6 4.0001 2.0963 -1.2707 11 6 5.4720 1.8175 -1.4345 12 1 5.9940 1.2227 -0.6995 13 6 6.1525 2.3225 -2.5221 14 7 5.5171 3.0480 -3.4163 15 14 7.9770 1.9776 -2.7248 16 1 8.4524 1.1451 -1.5906 17 1 8.2052 1.2531 -4.0009 18 1 8.7243 3.2607 -2.7436 19 1 -0.3633 -1.0259 -0.0606 20 1 -0.3633 0.4603 0.9188 21 1 -0.3635 0.5654 -0.8581 22 1 1.8933 -0.5137 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 1.8388 1.7255 -2.1261 25 1 0.3895 2.1559 -1.1867 26 1 1.5910 4.0910 -1.9063 27 1 1.3837 3.2012 1.1114 28 1 0.7640 1.6466 1.7577 29 1 2.9061 1.0509 2.6892 30 1 2.9180 2.8298 2.9307 31 1 4.9223 1.6803 1.5260 32 1 4.2024 3.2068 0.9312 33 1 3.4573 1.6987 -2.1283 34 1 3.8391 3.1724 -1.2059 35 1 5.9959 3.4037 -4.1813 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591031355.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:00 Heat of formation + Delta-G solvation = -43.190635 kcal Electronic energy + Delta-G solvation = -15480.559718 eV Core-core repulsion = 13092.655244 eV Total energy + Delta-G solvation = -2387.904474 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.40180 -35.39706 -33.57843 -32.54915 -30.73748 -27.97398 -26.18544 -24.47145 -23.25093 -21.95672 -20.08492 -17.79371 -17.00015 -16.24759 -15.28383 -14.92196 -14.45503 -13.97937 -13.55097 -13.16817 -12.91488 -12.27708 -12.07649 -12.00596 -11.58755 -11.27325 -11.07563 -10.93149 -10.88597 -10.46207 -10.33258 -10.18383 -10.03264 -9.80298 -9.60573 -9.15518 -8.92985 -8.26360 -6.97380 -5.90194 -3.88823 3.36474 3.43561 3.49270 4.51617 4.76791 4.87555 5.22476 5.35533 5.46069 5.52217 5.55898 5.68182 5.75867 5.85490 5.98031 6.03032 6.14105 6.16639 6.31431 6.36041 6.43247 6.60284 6.65457 6.78801 6.85072 6.92267 7.40233 7.79802 7.96046 8.22452 8.25297 8.42755 8.75406 9.20566 9.73346 11.20093 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038015 B = 0.009556 C = 0.009045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.379339 B = 2929.312237 C = 3094.871463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.098 4.098 3 C 0.102 3.898 4 C 0.065 3.935 5 O -0.556 6.556 6 C -0.129 4.129 7 C -0.132 4.132 8 C 0.062 3.938 9 N -0.518 5.518 10 C 0.179 3.821 11 C -0.501 4.501 12 H 0.058 0.942 13 C 0.052 3.948 14 N -0.900 5.900 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.286 1.286 19 H 0.050 0.950 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.034 0.966 26 H 0.368 0.632 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.025 0.975 34 H 0.031 0.969 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.728 -2.055 6.510 11.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.136 4.136 3 C 0.011 3.989 4 C -0.013 4.013 5 O -0.360 6.360 6 C -0.167 4.167 7 C -0.170 4.170 8 C -0.067 4.067 9 N -0.242 5.242 10 C 0.055 3.945 11 C -0.540 4.540 12 H 0.076 0.924 13 C -0.148 4.148 14 N -0.541 5.541 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.213 1.213 19 H 0.069 0.931 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.214 0.786 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.194 -2.680 6.875 11.789 hybrid contribution 0.481 0.847 -0.875 1.309 sum -8.713 -1.834 6.000 10.737 Atomic orbital electron populations 1.21964 0.96775 1.01054 1.01559 1.21377 0.93795 0.95779 1.02690 1.21737 0.90812 0.93426 0.92903 1.22748 0.95888 0.83262 0.99448 1.86651 1.76849 1.21332 1.51198 1.22811 0.97523 1.00912 0.95446 1.22715 0.95900 1.00751 0.97610 1.22788 0.96485 0.97416 0.89962 1.63657 1.03196 1.53030 1.04336 1.20216 0.94450 0.94324 0.85553 1.21350 0.94327 1.30987 1.07371 0.92383 1.24948 0.98153 0.95579 0.96073 1.69972 1.35799 1.35838 1.12464 0.86528 0.85695 0.77819 0.77874 1.19805 1.21218 1.21262 0.93090 0.92850 0.92757 0.91584 0.91594 0.92449 0.94793 0.78555 0.91024 0.91915 0.91778 0.92094 0.91643 0.93847 0.95738 0.95168 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.34 37.16 0.35 -1.62 16 2 C -0.10 -1.57 5.32 -26.73 -0.14 -1.71 16 3 C 0.10 1.88 0.72 -130.61 -0.09 1.78 16 4 C 0.06 1.18 4.89 37.16 0.18 1.36 16 5 O -0.56 -10.76 9.77 -35.23 -0.34 -11.10 16 6 C -0.13 -2.11 5.72 -24.91 -0.14 -2.25 16 7 C -0.13 -2.18 7.08 -24.59 -0.17 -2.35 16 8 C 0.06 1.29 6.26 -2.30 -0.01 1.27 16 9 N -0.52 -11.69 4.76 -217.17 -1.03 -12.72 16 10 C 0.18 4.78 3.29 -4.97 -0.02 4.76 16 11 C -0.50 -14.65 8.88 -34.44 -0.31 -14.96 16 12 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 13 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 15 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 16 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 19 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 20 H 0.05 0.63 6.44 -51.93 -0.33 0.29 16 21 H 0.05 0.67 6.17 -51.93 -0.32 0.35 16 22 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.06 1.16 6.18 -51.93 -0.32 0.84 16 25 H 0.03 0.52 6.20 -51.93 -0.32 0.20 16 26 H 0.37 5.71 9.12 45.56 0.42 6.12 16 27 H 0.07 1.24 7.09 -51.93 -0.37 0.87 16 28 H 0.06 0.88 6.08 -51.93 -0.32 0.57 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.04 0.99 7.58 -51.93 -0.39 0.60 16 33 H 0.02 0.70 5.82 -51.93 -0.30 0.39 16 34 H 0.03 0.88 5.61 -51.93 -0.29 0.59 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 266.87 15.07 4.02 4.02 Total: -1.00 -31.58 266.87 -6.73 -38.31 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.63 Total: 2.89 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -0.46 Total: -12.28 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: -0.30 Total: -39.16 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.34 Total: -11.10 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.58 -6.73 -38.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591031355.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.881 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds