Wall clock time and date at job start Sun Mar 29 2020 22:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46749 * 2 1 4 4 C 1.53006 * 109.88270 * 302.79215 * 3 2 1 5 5 O 1.42893 * 109.47323 * 177.35452 * 4 3 2 6 6 C 1.54315 * 110.02677 * 63.90692 * 3 2 1 7 7 C 1.55145 * 103.02107 * 97.19547 * 6 3 2 8 8 C 1.54908 * 101.64944 * 35.65660 * 7 6 3 9 9 N 1.47441 * 109.89190 * 181.75796 * 3 2 1 10 10 C 1.46902 * 111.00172 * 117.17149 * 9 3 2 11 11 C 1.50702 * 109.47049 * 192.72957 * 10 9 3 12 12 H 1.07998 * 120.00409 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99897 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99887 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47206 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47427 * 120.00198 * 15 13 11 18 18 H 1.48501 * 109.47187 * 240.00124 * 15 13 11 19 19 H 1.09005 * 109.46741 * 176.62030 * 1 2 3 20 20 H 1.09001 * 109.47019 * 296.61029 * 1 2 3 21 21 H 1.08998 * 109.47842 * 56.61951 * 1 2 3 22 22 H 1.09002 * 109.47043 * 240.00612 * 2 1 3 23 23 H 1.08996 * 109.47561 * 120.00230 * 2 1 3 24 24 H 1.09003 * 109.46429 * 297.35428 * 4 3 2 25 25 H 1.08996 * 109.47158 * 57.35182 * 4 3 2 26 26 H 0.96706 * 113.99974 * 179.97438 * 5 4 3 27 27 H 1.08996 * 110.71374 * 215.58005 * 6 3 2 28 28 H 1.09003 * 110.70831 * 338.81905 * 6 3 2 29 29 H 1.08998 * 110.99275 * 277.57002 * 7 6 3 30 30 H 1.09001 * 111.02499 * 153.76362 * 7 6 3 31 31 H 1.09006 * 110.37524 * 204.10184 * 8 7 6 32 32 H 1.09007 * 110.46751 * 81.80731 * 8 7 6 33 33 H 1.09000 * 109.47137 * 312.73098 * 10 9 3 34 34 H 1.09004 * 109.46775 * 72.72916 * 10 9 3 35 35 H 0.97003 * 119.99874 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4786 2.1928 -1.2096 5 8 1.9100 3.5544 -1.1677 6 6 1.6148 2.1533 1.3021 7 6 2.8745 2.0236 2.1984 8 6 4.0140 2.1572 1.1576 9 7 3.5136 1.4536 -0.0425 10 6 4.0001 2.0963 -1.2707 11 6 5.4720 1.8175 -1.4345 12 1 5.9940 1.2227 -0.6995 13 6 6.1525 2.3225 -2.5221 14 7 5.5171 3.0480 -3.4163 15 14 7.9770 1.9776 -2.7248 16 1 8.4524 1.1451 -1.5906 17 1 8.2052 1.2531 -4.0009 18 1 8.7243 3.2607 -2.7436 19 1 -0.3633 -1.0259 -0.0606 20 1 -0.3633 0.4603 0.9188 21 1 -0.3635 0.5654 -0.8581 22 1 1.8933 -0.5137 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 1.8388 1.7255 -2.1261 25 1 0.3895 2.1559 -1.1867 26 1 1.5910 4.0910 -1.9063 27 1 1.3837 3.2012 1.1114 28 1 0.7640 1.6466 1.7577 29 1 2.9061 1.0509 2.6892 30 1 2.9180 2.8298 2.9307 31 1 4.9223 1.6803 1.5260 32 1 4.2024 3.2068 0.9312 33 1 3.4573 1.6987 -2.1283 34 1 3.8391 3.1724 -1.2059 35 1 5.9959 3.4037 -4.1813 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591031355.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:00 Heat of formation + Delta-G solvation = -66.960251 kcal Electronic energy + Delta-G solvation = -15481.590446 eV Core-core repulsion = 13092.655244 eV Total energy + Delta-G solvation = -2388.935202 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.93517 -36.91843 -35.39248 -34.25269 -32.49584 -29.35893 -28.21178 -25.94759 -24.84448 -23.61633 -21.69099 -19.31619 -18.65360 -18.21500 -16.94554 -16.45962 -16.31877 -15.62740 -14.93222 -14.89314 -14.19155 -14.01461 -13.68193 -13.55771 -13.22308 -12.98972 -12.77737 -12.48825 -12.38275 -12.13463 -11.91914 -11.78079 -11.63992 -11.41662 -11.04585 -11.01611 -10.82911 -10.41912 -8.78710 -8.14338 -6.22454 1.37874 1.37965 1.51778 2.41436 3.15572 3.32302 3.40176 3.87158 3.97483 4.15258 4.31877 4.34764 4.50708 4.56321 4.56807 4.68397 4.81462 4.89418 5.00105 5.08144 5.12748 5.23289 5.26697 5.36296 5.38692 5.47265 5.57304 5.63823 5.76444 6.18988 6.47056 6.79550 6.88938 6.96962 7.45100 8.94951 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038015 B = 0.009556 C = 0.009045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.379339 B = 2929.312237 C = 3094.871463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C 0.089 3.911 4 C 0.067 3.933 5 O -0.577 6.577 6 C -0.120 4.120 7 C -0.119 4.119 8 C 0.056 3.944 9 N -0.533 5.533 10 C 0.203 3.797 11 C -0.526 4.526 12 H 0.049 0.951 13 C 0.001 3.999 14 N -0.930 5.930 15 Si 0.963 3.037 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.278 1.278 19 H 0.069 0.931 20 H 0.070 0.930 21 H 0.054 0.946 22 H 0.042 0.958 23 H 0.070 0.930 24 H 0.026 0.974 25 H 0.071 0.929 26 H 0.381 0.619 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.013 0.987 33 H 0.000 1.000 34 H 0.004 0.996 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.602 -2.754 7.815 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C -0.001 4.001 4 C -0.011 4.011 5 O -0.383 6.383 6 C -0.158 4.158 7 C -0.156 4.156 8 C -0.072 4.072 9 N -0.257 5.257 10 C 0.077 3.923 11 C -0.565 4.565 12 H 0.067 0.933 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.788 3.212 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.204 1.204 19 H 0.087 0.913 20 H 0.089 0.911 21 H 0.073 0.927 22 H 0.061 0.939 23 H 0.089 0.911 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.230 0.770 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.018 0.982 34 H 0.021 0.979 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.087 -3.383 8.187 13.424 hybrid contribution 0.728 1.071 -1.296 1.832 sum -9.359 -2.311 6.891 11.850 Atomic orbital electron populations 1.21904 0.93604 1.02583 1.02436 1.21353 0.96450 0.93644 1.01810 1.22039 0.88239 0.95453 0.94324 1.22735 0.97864 0.82448 0.98017 1.86601 1.77672 1.22053 1.52022 1.22775 0.98523 1.00439 0.94071 1.22681 0.93574 1.02662 0.96730 1.22791 0.98223 0.95248 0.90918 1.63562 1.06390 1.52552 1.03183 1.19739 0.93128 0.92664 0.86776 1.21676 0.95927 1.31286 1.07584 0.93287 1.25824 1.03051 0.95170 0.95611 1.70089 1.37719 1.36396 1.12886 0.85440 0.79747 0.77967 0.78078 1.19264 1.20279 1.20395 0.91250 0.91120 0.92698 0.93886 0.91143 0.95600 0.91071 0.77023 0.91985 0.88434 0.89913 0.89901 0.92542 0.96812 0.98187 0.97866 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.34 71.98 0.67 -2.55 16 2 C -0.09 -2.86 5.32 30.59 0.16 -2.70 16 3 C 0.09 3.22 0.72 3.87 0.00 3.22 16 4 C 0.07 2.45 4.89 71.98 0.35 2.80 16 5 O -0.58 -22.81 9.77 -148.98 -1.46 -24.26 16 6 C -0.12 -3.62 5.72 31.78 0.18 -3.43 16 7 C -0.12 -3.64 7.08 31.98 0.23 -3.42 16 8 C 0.06 2.38 6.26 86.77 0.54 2.92 16 9 N -0.53 -24.50 4.76 -840.98 -4.00 -28.50 16 10 C 0.20 11.28 3.29 85.56 0.28 11.57 16 11 C -0.53 -31.73 8.88 25.60 0.23 -31.50 16 12 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 13 C 0.00 0.05 5.46 84.66 0.46 0.52 16 14 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 15 Si 0.96 46.39 29.54 68.60 2.03 48.42 16 16 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 20 H 0.07 1.32 6.44 -2.39 -0.02 1.30 16 21 H 0.05 1.19 6.17 -2.39 -0.01 1.17 16 22 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.03 1.09 6.18 -2.39 -0.01 1.08 16 25 H 0.07 2.04 6.20 -2.39 -0.01 2.03 16 26 H 0.38 12.19 9.12 -74.05 -0.68 11.52 16 27 H 0.06 2.01 7.09 -2.39 -0.02 1.99 16 28 H 0.10 2.29 6.08 -2.39 -0.01 2.27 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 32 H 0.01 0.64 7.58 -2.38 -0.02 0.62 16 33 H 0.00 0.01 5.82 -2.39 -0.01 0.00 16 34 H 0.00 0.23 5.61 -2.38 -0.01 0.21 16 35 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -69.71 266.87 0.36 -69.34 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.40 Total: 14.71 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 3.11 Total: -22.57 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -3.72 Total: -85.63 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -1.46 Total: -24.26 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -69.71 0.36 -69.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591031355.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.381 kcal (2) G-P(sol) polarization free energy of solvation -69.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds