Wall clock time and date at job start Sun Mar 29 2020 22:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48506 * 109.47375 * 270.00154 * 3 2 1 5 5 H 1.48499 * 109.47221 * 29.99879 * 3 2 1 6 6 H 1.48502 * 109.47236 * 149.99970 * 3 2 1 7 7 C 1.37881 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99563 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99871 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46985 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00199 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.53346 * 36.16308 * 11 10 9 13 13 C 1.54890 * 110.48546 * 273.55231 * 11 10 9 14 14 C 1.54887 * 102.91108 * 203.47152 * 13 11 10 15 15 C 1.54265 * 104.20056 * 37.84875 * 14 13 11 16 16 C 1.53877 * 106.59605 * 336.39127 * 15 14 13 17 17 H 1.08999 * 110.03493 * 119.28247 * 16 15 14 18 18 C 1.53000 * 110.03157 * 240.66643 * 16 15 14 19 19 C 1.52997 * 109.47072 * 293.54736 * 18 16 15 20 20 O 1.42901 * 109.47438 * 180.02562 * 19 18 16 21 21 H 0.97001 * 119.99901 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46678 * 60.00761 * 9 7 2 23 23 H 1.08993 * 109.47436 * 300.00102 * 9 7 2 24 24 H 1.00906 * 110.99292 * 56.05170 * 10 9 7 25 25 H 1.09002 * 110.75897 * 85.06270 * 13 11 10 26 26 H 1.09006 * 110.75292 * 321.87499 * 13 11 10 27 27 H 1.09004 * 110.48468 * 156.53190 * 14 13 11 28 28 H 1.09004 * 110.48634 * 279.03637 * 14 13 11 29 29 H 1.08995 * 110.03137 * 95.67051 * 15 14 13 30 30 H 1.08998 * 110.03049 * 217.05739 * 15 14 13 31 31 H 1.09004 * 109.47042 * 53.54529 * 18 16 15 32 32 H 1.09002 * 109.47429 * 173.54493 * 18 16 15 33 33 H 1.09004 * 109.47018 * 299.99808 * 19 18 16 34 34 H 1.09002 * 109.47192 * 59.99612 * 19 18 16 35 35 H 0.96698 * 114.00420 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5791 0.0013 11 6 5.4697 -2.6183 0.0014 12 1 5.8739 -1.8041 0.6030 13 6 6.0140 -2.5443 -1.4468 14 6 7.4156 -3.1919 -1.3233 15 6 7.2127 -4.3441 -0.3177 16 6 5.9785 -3.9792 0.5257 17 1 5.2044 -4.7365 0.4018 18 6 6.3672 -3.8641 2.0010 19 6 6.7784 -5.2400 2.5289 20 8 7.1410 -5.1327 3.9069 21 1 -0.4850 0.8401 0.0004 22 1 3.8751 -0.6797 0.8896 23 1 3.8745 -0.6808 -0.8904 24 1 3.6254 -3.0961 -0.7795 25 1 6.0948 -1.5086 -1.7768 26 1 5.3826 -3.1166 -2.1265 27 1 7.7426 -3.5804 -2.2878 28 1 8.1367 -2.4704 -0.9393 29 1 7.0376 -5.2785 -0.8509 30 1 8.0892 -4.4388 0.3233 31 1 7.2023 -3.1711 2.1036 32 1 5.5162 -3.4948 2.5733 33 1 5.9433 -5.9330 2.4262 34 1 7.6294 -5.6093 1.9565 35 1 7.4129 -5.9693 4.3084 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591761723.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:13 Heat of formation + Delta-G solvation = -73.898162 kcal Electronic energy + Delta-G solvation = -14456.537578 eV Core-core repulsion = 12067.301526 eV Total energy + Delta-G solvation = -2389.236052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.86262 -36.74510 -34.26109 -32.17355 -31.75516 -28.22375 -26.72352 -25.28097 -22.30961 -21.18792 -20.28680 -19.29742 -17.41283 -16.77130 -15.73644 -15.06731 -14.79058 -14.31346 -13.97330 -13.69725 -13.11245 -12.78761 -12.53453 -12.30432 -11.94861 -11.59478 -11.33918 -10.96075 -10.86706 -10.67891 -10.54670 -10.42195 -10.33087 -10.10274 -9.87917 -9.72844 -9.24807 -8.58452 -7.39678 -6.04412 -4.02006 3.29360 3.37087 3.40309 4.19979 4.43529 4.72827 4.80509 4.97357 5.15400 5.23688 5.28768 5.43530 5.48767 5.61935 5.65983 5.72804 5.80349 5.88929 5.96848 6.05655 6.13160 6.24550 6.36890 6.45261 6.52415 6.65012 6.83425 7.05993 7.59808 7.64438 7.94865 8.37951 8.67711 9.03819 9.57900 11.09006 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032143 B = 0.007118 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.893129 B = 3932.960272 C = 4373.118798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.165 3.835 10 N -0.673 5.673 11 C 0.088 3.912 12 H 0.076 0.924 13 C -0.156 4.156 14 C -0.121 4.121 15 C -0.123 4.123 16 C -0.079 4.079 17 H 0.079 0.921 18 C -0.109 4.109 19 C 0.075 3.925 20 O -0.577 6.577 21 H 0.263 0.737 22 H 0.025 0.975 23 H -0.021 1.021 24 H 0.335 0.665 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.969 -9.037 0.249 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.301 5.301 11 C -0.023 4.023 12 H 0.095 0.905 13 C -0.196 4.196 14 C -0.159 4.159 15 C -0.161 4.161 16 C -0.099 4.099 17 H 0.097 0.903 18 C -0.146 4.146 19 C -0.002 4.002 20 O -0.381 6.381 21 H 0.073 0.927 22 H 0.043 0.957 23 H -0.003 1.003 24 H 0.153 0.847 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 15.574 -8.339 0.839 17.687 hybrid contribution 0.676 0.624 -0.906 1.291 sum 16.250 -7.716 -0.067 17.989 Atomic orbital electron populations 1.69903 1.06163 1.26845 1.51109 1.24909 0.94744 0.98946 0.94763 0.86824 0.80382 0.83892 0.78407 1.20381 1.21155 1.19153 1.21083 0.89056 0.94770 1.50457 0.90341 1.20006 0.96496 0.85137 0.94653 1.60486 1.03870 1.16484 1.49295 1.22482 0.89933 0.96198 0.93729 0.90549 1.23254 0.96593 1.00610 0.99094 1.22257 0.97331 0.97594 0.98698 1.22281 0.97965 0.98252 0.97554 1.21719 0.96539 0.98530 0.93076 0.90261 1.21543 1.02013 0.95505 0.95550 1.22306 0.97990 0.98486 0.81426 1.86509 1.89423 1.36754 1.25453 0.92679 0.95691 1.00290 0.84658 0.91913 0.91418 0.92235 0.91965 0.92128 0.91964 0.91846 0.90394 0.93700 0.93983 0.77972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.52 -14.95 9.87 -34.44 -0.34 -15.29 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.16 4.05 4.36 -4.97 -0.02 4.03 16 10 N -0.67 -13.91 6.27 -106.13 -0.67 -14.57 16 11 C 0.09 1.47 2.71 -65.95 -0.18 1.29 16 12 H 0.08 1.36 7.60 -51.93 -0.39 0.96 16 13 C -0.16 -2.29 6.40 -24.74 -0.16 -2.44 16 14 C -0.12 -1.43 6.83 -25.07 -0.17 -1.60 16 15 C -0.12 -1.40 5.95 -25.61 -0.15 -1.55 16 16 C -0.08 -1.10 2.68 -89.40 -0.24 -1.34 16 17 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 18 C -0.11 -1.52 4.74 -26.73 -0.13 -1.65 16 19 C 0.08 0.88 6.86 37.16 0.26 1.14 16 20 O -0.58 -7.03 13.66 -35.23 -0.48 -7.51 16 21 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 22 H 0.03 0.64 7.14 -51.93 -0.37 0.27 16 23 H -0.02 -0.50 7.55 -51.93 -0.39 -0.89 16 24 H 0.34 6.73 8.29 -39.29 -0.33 6.40 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.99 7.82 -51.93 -0.41 0.58 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.65 6.78 -51.93 -0.35 0.30 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.04 0.42 6.90 -51.93 -0.36 0.06 16 35 H 0.37 2.64 9.12 45.56 0.42 3.05 16 LS Contribution 280.58 15.07 4.23 4.23 Total: -1.00 -31.85 280.58 -7.20 -39.05 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.15 Total: 4.30 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -1.23 Total: -15.51 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.11 Total: -41.83 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.48 Total: -7.51 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.85 -7.20 -39.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591761723.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.850 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds