Wall clock time and date at job start Sun Mar 29 2020 22:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48506 * 109.47375 * 270.00154 * 3 2 1 5 5 H 1.48499 * 109.47221 * 29.99879 * 3 2 1 6 6 H 1.48502 * 109.47236 * 149.99970 * 3 2 1 7 7 C 1.37881 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99563 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99871 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46985 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00199 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.53346 * 36.16308 * 11 10 9 13 13 C 1.54890 * 110.48546 * 273.55231 * 11 10 9 14 14 C 1.54887 * 102.91108 * 203.47152 * 13 11 10 15 15 C 1.54265 * 104.20056 * 37.84875 * 14 13 11 16 16 C 1.53877 * 106.59605 * 336.39127 * 15 14 13 17 17 H 1.08999 * 110.03493 * 119.28247 * 16 15 14 18 18 C 1.53000 * 110.03157 * 240.66643 * 16 15 14 19 19 C 1.52997 * 109.47072 * 293.54736 * 18 16 15 20 20 O 1.42901 * 109.47438 * 180.02562 * 19 18 16 21 21 H 0.97001 * 119.99901 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46678 * 60.00761 * 9 7 2 23 23 H 1.08993 * 109.47436 * 300.00102 * 9 7 2 24 24 H 1.00906 * 110.99292 * 56.05170 * 10 9 7 25 25 H 1.09002 * 110.75897 * 85.06270 * 13 11 10 26 26 H 1.09006 * 110.75292 * 321.87499 * 13 11 10 27 27 H 1.09004 * 110.48468 * 156.53190 * 14 13 11 28 28 H 1.09004 * 110.48634 * 279.03637 * 14 13 11 29 29 H 1.08995 * 110.03137 * 95.67051 * 15 14 13 30 30 H 1.08998 * 110.03049 * 217.05739 * 15 14 13 31 31 H 1.09004 * 109.47042 * 53.54529 * 18 16 15 32 32 H 1.09002 * 109.47429 * 173.54493 * 18 16 15 33 33 H 1.09004 * 109.47018 * 299.99808 * 19 18 16 34 34 H 1.09002 * 109.47192 * 59.99612 * 19 18 16 35 35 H 0.96698 * 114.00420 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5791 0.0013 11 6 5.4697 -2.6183 0.0014 12 1 5.8739 -1.8041 0.6030 13 6 6.0140 -2.5443 -1.4468 14 6 7.4156 -3.1919 -1.3233 15 6 7.2127 -4.3441 -0.3177 16 6 5.9785 -3.9792 0.5257 17 1 5.2044 -4.7365 0.4018 18 6 6.3672 -3.8641 2.0010 19 6 6.7784 -5.2400 2.5289 20 8 7.1410 -5.1327 3.9069 21 1 -0.4850 0.8401 0.0004 22 1 3.8751 -0.6797 0.8896 23 1 3.8745 -0.6808 -0.8904 24 1 3.6254 -3.0961 -0.7795 25 1 6.0948 -1.5086 -1.7768 26 1 5.3826 -3.1166 -2.1265 27 1 7.7426 -3.5804 -2.2878 28 1 8.1367 -2.4704 -0.9393 29 1 7.0376 -5.2785 -0.8509 30 1 8.0892 -4.4388 0.3233 31 1 7.2023 -3.1711 2.1036 32 1 5.5162 -3.4948 2.5733 33 1 5.9433 -5.9330 2.4262 34 1 7.6294 -5.6093 1.9565 35 1 7.4129 -5.9693 4.3084 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591761723.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:12 Heat of formation + Delta-G solvation = -98.701500 kcal Electronic energy + Delta-G solvation = -14457.613132 eV Core-core repulsion = 12067.301526 eV Total energy + Delta-G solvation = -2390.311606 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.04057 -37.72387 -35.98909 -34.20029 -32.85309 -29.97067 -27.77994 -26.83180 -23.57500 -22.94167 -21.55012 -20.40218 -18.95800 -18.28180 -16.90084 -16.72668 -15.95895 -15.80810 -15.47820 -14.89057 -14.66256 -14.34811 -13.91646 -13.76855 -13.48417 -13.03549 -12.80114 -12.47470 -12.14150 -11.96254 -11.85845 -11.74609 -11.64382 -11.50854 -11.36893 -11.19212 -10.83793 -10.77827 -9.04700 -8.32469 -6.36638 1.31344 1.34114 1.45339 2.31690 3.01451 3.27872 3.46227 3.74434 3.95535 4.01455 4.22930 4.37360 4.46154 4.51699 4.59946 4.64710 4.74846 4.79984 4.83764 4.87303 4.99183 5.07824 5.12181 5.24150 5.27098 5.37820 5.41953 5.52292 5.54708 5.99637 6.57773 6.66493 6.78439 6.95435 7.28574 8.84412 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032143 B = 0.007118 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.893129 B = 3932.960272 C = 4373.118798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.529 4.529 8 H 0.037 0.963 9 C 0.179 3.821 10 N -0.683 5.683 11 C 0.080 3.920 12 H 0.063 0.937 13 C -0.155 4.155 14 C -0.114 4.114 15 C -0.114 4.114 16 C -0.072 4.072 17 H 0.072 0.928 18 C -0.108 4.108 19 C 0.079 3.921 20 O -0.599 6.599 21 H 0.268 0.732 22 H 0.018 0.982 23 H -0.015 1.015 24 H 0.337 0.663 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.716 -9.230 -0.229 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.567 4.567 8 H 0.056 0.944 9 C 0.050 3.950 10 N -0.312 5.312 11 C -0.031 4.031 12 H 0.082 0.918 13 C -0.194 4.194 14 C -0.152 4.152 15 C -0.152 4.152 16 C -0.091 4.091 17 H 0.090 0.910 18 C -0.146 4.146 19 C 0.002 3.998 20 O -0.408 6.408 21 H 0.077 0.923 22 H 0.036 0.964 23 H 0.003 0.997 24 H 0.155 0.845 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 18.348 -8.570 0.365 20.254 hybrid contribution -0.234 0.593 -0.721 0.962 sum 18.115 -7.977 -0.355 19.797 Atomic orbital electron populations 1.70051 1.08115 1.28232 1.52330 1.25875 0.95648 1.03262 0.94141 0.85673 0.79251 0.78492 0.79257 1.18875 1.20451 1.17804 1.21366 0.91470 0.93441 1.50411 0.94439 1.19703 0.93544 0.87460 0.94306 1.60392 1.06845 1.14237 1.49713 1.22626 0.87227 0.97707 0.95510 0.91827 1.23195 0.98541 1.00556 0.97141 1.22245 0.95317 0.97630 0.99963 1.22243 0.96922 0.98743 0.97261 1.21631 0.97668 0.96379 0.93463 0.90978 1.21501 1.00558 0.97205 0.95314 1.22240 0.99171 0.96721 0.81647 1.86448 1.89605 1.38922 1.25805 0.92312 0.96430 0.99694 0.84503 0.92767 0.91484 0.90215 0.91318 0.90414 0.90261 0.91825 0.93976 0.93413 0.91285 0.75409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 2 C 0.01 0.50 5.47 84.66 0.46 0.96 16 3 Si 0.95 45.26 27.47 68.60 1.88 47.15 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.25 -11.49 6.54 99.48 0.65 -10.84 16 7 C -0.53 -31.58 9.87 25.60 0.25 -31.33 16 8 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 9 C 0.18 8.85 4.36 85.56 0.37 9.22 16 10 N -0.68 -28.64 6.27 -489.67 -3.07 -31.71 16 11 C 0.08 2.61 2.71 46.06 0.12 2.74 16 12 H 0.06 2.24 7.60 -2.39 -0.02 2.22 16 13 C -0.15 -4.27 6.40 31.88 0.20 -4.07 16 14 C -0.11 -2.31 6.83 31.67 0.22 -2.09 16 15 C -0.11 -2.19 5.95 31.32 0.19 -2.01 16 16 C -0.07 -1.89 2.68 -10.00 -0.03 -1.92 16 17 H 0.07 2.01 8.04 -2.39 -0.02 1.99 16 18 C -0.11 -2.92 4.74 30.59 0.15 -2.78 16 19 C 0.08 1.68 6.86 71.98 0.49 2.18 16 20 O -0.60 -13.51 13.66 -148.98 -2.04 -15.54 16 21 H 0.27 15.84 8.31 -92.71 -0.77 15.06 16 22 H 0.02 0.90 7.14 -2.39 -0.02 0.88 16 23 H -0.01 -0.70 7.55 -2.39 -0.02 -0.72 16 24 H 0.34 13.79 8.29 -89.69 -0.74 13.05 16 25 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.85 7.82 -2.38 -0.02 1.83 16 27 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.31 6.78 -2.39 -0.02 1.29 16 31 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 33 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.07 1.11 6.90 -2.39 -0.02 1.09 16 35 H 0.40 4.69 9.12 -74.06 -0.68 4.01 16 Total: -1.00 -69.99 280.58 -0.90 -70.89 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -0.41 Total: 18.34 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: 2.43 Total: -29.10 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -2.77 Total: -91.73 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -2.04 Total: -15.54 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.15 kcal Total: -69.99 -0.90 -70.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591761723.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.816 kcal (2) G-P(sol) polarization free energy of solvation -69.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds