Wall clock time and date at job start Sun Mar 29 2020 22:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00062 * 2 1 4 4 O 1.20826 * 120.00192 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00175 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.90925 * 48.74115 * 5 3 2 7 7 C 1.53784 * 113.61605 * 179.97438 * 5 3 2 8 8 C 1.53787 * 87.07923 * 139.97671 * 7 5 3 9 9 H 1.08998 * 113.61103 * 89.12089 * 8 7 5 10 10 N 1.46899 * 113.61436 * 219.93380 * 8 7 5 11 11 C 1.46896 * 111.00326 * 205.00355 * 10 8 7 12 12 C 1.50687 * 109.47459 * 179.97438 * 11 10 8 13 13 H 1.08003 * 120.00294 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00084 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99814 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99753 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47208 * 60.00321 * 16 14 12 18 18 H 1.48509 * 109.46698 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47255 * 299.99908 * 16 14 12 20 20 C 1.53778 * 87.08035 * 334.56830 * 8 7 5 21 21 H 1.09004 * 109.46911 * 59.99875 * 1 2 3 22 22 H 1.08992 * 109.47029 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46497 * 300.00228 * 1 2 3 24 24 H 1.09004 * 113.61451 * 25.43157 * 7 5 3 25 25 H 1.08994 * 113.61477 * 254.52459 * 7 5 3 26 26 H 1.00900 * 110.99906 * 81.04378 * 10 8 7 27 27 H 1.09003 * 109.46833 * 300.00260 * 11 10 8 28 28 H 1.09005 * 109.47199 * 59.99558 * 11 10 8 29 29 H 0.97007 * 119.99243 * 180.02562 * 15 14 12 30 30 H 1.08999 * 113.61111 * 139.98327 * 20 8 7 31 31 H 1.08999 * 113.61280 * 270.79710 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0244 0.6360 -0.7557 7 6 4.1078 2.7142 -0.0011 8 6 5.1814 2.2270 0.9863 9 1 6.0810 1.8483 0.5012 10 7 5.4730 3.1870 2.0593 11 6 6.8285 2.9882 2.5896 12 6 7.0910 3.9889 3.6852 13 1 6.3276 4.7016 3.9600 14 6 8.3061 3.9946 4.3370 15 7 9.2360 3.1270 4.0021 16 14 8.6312 5.2346 5.6957 17 1 7.6404 5.0460 6.7855 18 1 10.0016 5.0337 6.2316 19 1 8.5106 6.6103 5.1496 20 6 4.1916 1.1239 1.3962 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 3.4175 3.4406 0.4278 25 1 4.5106 3.0288 -0.9638 26 1 4.7847 3.1274 2.7947 27 1 6.9173 1.9784 2.9903 28 1 7.5556 3.1268 1.7894 29 1 10.0906 3.1308 4.4610 30 1 4.6620 0.1546 1.5616 31 1 3.5252 1.4149 2.2082 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591771006.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:49 Heat of formation + Delta-G solvation = -71.257219 kcal Electronic energy + Delta-G solvation = -13860.835527 eV Core-core repulsion = 11335.880900 eV Total energy + Delta-G solvation = -2524.954627 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.71353 -38.44864 -36.33577 -33.91076 -31.84818 -28.45030 -26.74824 -25.46653 -24.70354 -21.81680 -20.76603 -19.33128 -17.65962 -16.75323 -16.37016 -16.21408 -15.24526 -14.54008 -14.32022 -13.65943 -13.22266 -13.03827 -12.58342 -12.28999 -12.21601 -11.75252 -11.40296 -11.21708 -10.90638 -10.86557 -10.69695 -10.60271 -10.30749 -10.20914 -9.78454 -9.16180 -8.48392 -7.29384 -6.03409 -4.05397 2.20193 2.70607 3.34403 3.38048 3.41563 4.43412 4.54460 4.67534 4.83467 4.96099 5.02515 5.09378 5.16769 5.32554 5.37998 5.56690 5.74206 5.90394 5.99628 6.22066 6.22844 6.36234 6.60928 7.23274 7.41453 7.75446 7.78660 8.12132 8.37982 8.59319 9.03600 9.59629 11.07585 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.070077 B = 0.005118 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.463233 B = 5469.366355 C = 5550.263777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.472 3.528 4 O -0.507 6.507 5 C -0.113 4.113 6 H 0.122 0.878 7 C -0.110 4.110 8 C 0.074 3.926 9 H 0.096 0.904 10 N -0.676 5.676 11 C 0.193 3.807 12 C -0.517 4.517 13 H 0.062 0.938 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.900 3.100 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 C -0.149 4.149 21 H 0.061 0.939 22 H 0.098 0.902 23 H 0.061 0.939 24 H 0.097 0.903 25 H 0.073 0.927 26 H 0.333 0.667 27 H -0.012 1.012 28 H 0.029 0.971 29 H 0.262 0.738 30 H 0.077 0.923 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.907 -7.171 -7.719 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.315 3.685 4 O -0.394 6.394 5 C -0.133 4.133 6 H 0.140 0.860 7 C -0.148 4.148 8 C -0.038 4.038 9 H 0.114 0.886 10 N -0.305 5.305 11 C 0.066 3.934 12 C -0.555 4.555 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.727 3.273 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.189 4.189 21 H 0.079 0.921 22 H 0.117 0.883 23 H 0.080 0.920 24 H 0.116 0.884 25 H 0.092 0.908 26 H 0.150 0.850 27 H 0.006 0.994 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.731 -6.407 -8.084 16.386 hybrid contribution -0.131 -0.262 1.195 1.230 sum -12.862 -6.669 -6.889 16.042 Atomic orbital electron populations 1.23231 0.76916 1.03419 1.02437 1.86544 1.23034 1.33984 1.84180 1.23856 0.91998 0.81034 0.71631 1.90649 1.67058 1.36430 1.45229 1.22510 0.86269 1.02562 1.01918 0.86034 1.23167 0.98081 0.92939 1.00642 1.22890 0.95624 0.90446 0.94845 0.88562 1.60537 1.06847 1.49448 1.13687 1.19609 0.83859 0.95200 0.94717 1.21166 0.99870 1.16856 1.17644 0.92012 1.24982 0.96054 0.96008 0.97447 1.69952 1.05679 1.36010 1.42124 0.86540 0.77127 0.81698 0.81907 1.20275 1.21338 1.20134 1.23726 0.99237 1.02039 0.93877 0.92071 0.88322 0.91992 0.88434 0.90812 0.84953 0.99389 0.95307 0.92850 0.90467 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.47 10.57 -39.25 -0.41 -4.89 16 3 C 0.47 6.63 7.48 36.01 0.27 6.90 16 4 O -0.51 -8.41 15.65 -18.75 -0.29 -8.71 16 5 C -0.11 -1.47 4.26 -90.96 -0.39 -1.85 16 6 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 7 C -0.11 -1.64 7.20 -25.91 -0.19 -1.82 16 8 C 0.07 1.25 4.18 -66.90 -0.28 0.97 16 9 H 0.10 1.63 7.87 -51.93 -0.41 1.22 16 10 N -0.68 -14.35 6.61 -107.14 -0.71 -15.06 16 11 C 0.19 4.99 5.28 -4.98 -0.03 4.96 16 12 C -0.52 -14.65 9.32 -34.44 -0.32 -14.97 16 13 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 16 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.15 -2.14 7.25 -25.92 -0.19 -2.33 16 21 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 22 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 24 H 0.10 1.62 7.44 -51.93 -0.39 1.23 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.33 6.81 8.19 -39.29 -0.32 6.49 16 27 H -0.01 -0.32 8.14 -51.93 -0.42 -0.74 16 28 H 0.03 0.80 8.13 -51.93 -0.42 0.38 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.25 7.78 -51.93 -0.40 0.85 16 LS Contribution 270.46 15.07 4.08 4.08 Total: -1.00 -31.42 270.46 -6.22 -37.64 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -4.45 Total: 1.48 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -0.15 Total: -5.25 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.03 Total: -41.05 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.71 Total: -13.59 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.42 -6.22 -37.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591771006.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.620 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds