Wall clock time and date at job start Sun Mar 29 2020 22:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00062 * 2 1 4 4 O 1.20826 * 120.00192 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00175 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.90925 * 48.74115 * 5 3 2 7 7 C 1.53784 * 113.61605 * 179.97438 * 5 3 2 8 8 C 1.53787 * 87.07923 * 139.97671 * 7 5 3 9 9 H 1.08998 * 113.61103 * 89.12089 * 8 7 5 10 10 N 1.46899 * 113.61436 * 219.93380 * 8 7 5 11 11 C 1.46896 * 111.00326 * 205.00355 * 10 8 7 12 12 C 1.50687 * 109.47459 * 179.97438 * 11 10 8 13 13 H 1.08003 * 120.00294 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00084 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99814 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99753 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47208 * 60.00321 * 16 14 12 18 18 H 1.48509 * 109.46698 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47255 * 299.99908 * 16 14 12 20 20 C 1.53778 * 87.08035 * 334.56830 * 8 7 5 21 21 H 1.09004 * 109.46911 * 59.99875 * 1 2 3 22 22 H 1.08992 * 109.47029 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46497 * 300.00228 * 1 2 3 24 24 H 1.09004 * 113.61451 * 25.43157 * 7 5 3 25 25 H 1.08994 * 113.61477 * 254.52459 * 7 5 3 26 26 H 1.00900 * 110.99906 * 81.04378 * 10 8 7 27 27 H 1.09003 * 109.46833 * 300.00260 * 11 10 8 28 28 H 1.09005 * 109.47199 * 59.99558 * 11 10 8 29 29 H 0.97007 * 119.99243 * 180.02562 * 15 14 12 30 30 H 1.08999 * 113.61111 * 139.98327 * 20 8 7 31 31 H 1.08999 * 113.61280 * 270.79710 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0244 0.6360 -0.7557 7 6 4.1078 2.7142 -0.0011 8 6 5.1814 2.2270 0.9863 9 1 6.0810 1.8483 0.5012 10 7 5.4730 3.1870 2.0593 11 6 6.8285 2.9882 2.5896 12 6 7.0910 3.9889 3.6852 13 1 6.3276 4.7016 3.9600 14 6 8.3061 3.9946 4.3370 15 7 9.2360 3.1270 4.0021 16 14 8.6312 5.2346 5.6957 17 1 7.6404 5.0460 6.7855 18 1 10.0016 5.0337 6.2316 19 1 8.5106 6.6103 5.1496 20 6 4.1916 1.1239 1.3962 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 3.4175 3.4406 0.4278 25 1 4.5106 3.0288 -0.9638 26 1 4.7847 3.1274 2.7947 27 1 6.9173 1.9784 2.9903 28 1 7.5556 3.1268 1.7894 29 1 10.0906 3.1308 4.4610 30 1 4.6620 0.1546 1.5616 31 1 3.5252 1.4149 2.2082 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591771006.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:48 Heat of formation + Delta-G solvation = -92.694562 kcal Electronic energy + Delta-G solvation = -13861.765120 eV Core-core repulsion = 11335.880900 eV Total energy + Delta-G solvation = -2525.884220 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.81822 -39.67299 -37.44034 -35.81002 -33.79931 -29.54969 -28.40814 -26.65608 -26.09054 -23.73486 -22.03797 -20.55988 -18.82221 -18.38120 -17.73140 -17.33976 -16.83137 -16.23528 -15.66997 -15.11469 -14.54619 -14.34770 -14.22410 -13.49637 -13.44691 -13.27237 -12.97803 -12.88367 -12.61543 -12.26883 -12.11783 -11.82645 -11.77320 -11.57395 -11.41557 -11.07331 -10.63893 -9.03240 -8.21046 -6.31846 1.10830 1.42410 1.45600 1.53588 1.75495 2.41587 3.12261 3.38529 3.51740 3.54986 3.90137 4.09634 4.11592 4.30873 4.31989 4.55096 4.69513 4.72141 4.78889 4.96391 5.03876 5.11936 5.29461 5.35169 5.37114 5.64795 6.05184 6.49645 6.70710 6.74132 6.90542 7.39026 8.89966 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.070077 B = 0.005118 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.463233 B = 5469.366355 C = 5550.263777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.475 3.525 4 O -0.537 6.537 5 C -0.097 4.097 6 H 0.154 0.846 7 C -0.105 4.105 8 C 0.059 3.941 9 H 0.095 0.905 10 N -0.681 5.681 11 C 0.209 3.791 12 C -0.540 4.540 13 H 0.061 0.939 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.971 3.029 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.270 1.270 20 C -0.141 4.141 21 H 0.063 0.937 22 H 0.132 0.868 23 H 0.057 0.943 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.335 0.665 27 H -0.033 1.033 28 H 0.003 0.997 29 H 0.265 0.735 30 H 0.090 0.910 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.719 -7.577 -7.775 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.427 6.427 5 C -0.116 4.116 6 H 0.171 0.829 7 C -0.143 4.143 8 C -0.052 4.052 9 H 0.113 0.887 10 N -0.310 5.310 11 C 0.081 3.919 12 C -0.579 4.579 13 H 0.079 0.921 14 C -0.194 4.194 15 N -0.572 5.572 16 Si 0.795 3.205 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.195 1.195 20 C -0.180 4.180 21 H 0.082 0.918 22 H 0.151 0.849 23 H 0.076 0.924 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.153 0.847 27 H -0.015 1.015 28 H 0.021 0.979 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.572 -6.836 -8.157 17.247 hybrid contribution 0.055 -0.193 1.162 1.180 sum -13.517 -7.029 -6.994 16.764 Atomic orbital electron populations 1.23554 0.75032 1.05699 1.02429 1.86525 1.24875 1.32825 1.83572 1.23928 0.92250 0.81073 0.70835 1.90644 1.67765 1.37513 1.46767 1.22447 0.86038 1.01433 1.01682 0.82859 1.23042 0.96859 0.94019 1.00411 1.23054 0.96694 0.91231 0.94215 0.88667 1.60428 1.04677 1.51633 1.14265 1.19237 0.85852 0.93512 0.93305 1.21553 1.00274 1.17447 1.18593 0.92068 1.25902 0.95714 0.97922 0.99901 1.70071 1.06153 1.37604 1.43373 0.85423 0.77283 0.79022 0.78784 1.19216 1.20669 1.19514 1.23590 0.98234 1.01500 0.94689 0.91789 0.84945 0.92374 0.90208 0.89364 0.84656 1.01488 0.97885 0.92586 0.89116 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.61 16 2 O -0.36 -8.13 10.57 -51.38 -0.54 -8.67 16 3 C 0.47 12.51 7.48 71.24 0.53 13.04 16 4 O -0.54 -17.34 15.65 21.96 0.34 -17.00 16 5 C -0.10 -2.31 4.26 -11.01 -0.05 -2.35 16 6 H 0.15 2.72 8.14 -2.39 -0.02 2.70 16 7 C -0.10 -3.01 7.20 31.12 0.22 -2.79 16 8 C 0.06 1.97 4.18 45.44 0.19 2.16 16 9 H 0.10 3.20 7.87 -2.39 -0.02 3.18 16 10 N -0.68 -29.24 6.61 -492.87 -3.26 -32.49 16 11 C 0.21 11.07 5.28 85.55 0.45 11.52 16 12 C -0.54 -30.99 9.32 25.60 0.24 -30.75 16 13 H 0.06 3.43 7.81 -2.91 -0.02 3.41 16 14 C 0.00 0.23 5.46 84.66 0.46 0.69 16 15 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 16 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 C -0.14 -3.84 7.25 31.12 0.23 -3.62 16 21 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 22 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 24 H 0.08 2.61 7.44 -2.39 -0.02 2.60 16 25 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.34 13.90 8.19 -89.69 -0.73 13.17 16 27 H -0.03 -1.83 8.14 -2.39 -0.02 -1.85 16 28 H 0.00 0.17 8.13 -2.38 -0.02 0.16 16 29 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 31 H 0.08 2.27 7.78 -2.39 -0.02 2.25 16 Total: -1.00 -67.34 270.46 2.71 -64.62 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.38 Total: 13.32 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 3.48 Total: -10.48 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -2.97 Total: -88.21 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.20 Total: -25.67 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -67.34 2.71 -64.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591771006.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.071 kcal (2) G-P(sol) polarization free energy of solvation -67.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds