Wall clock time and date at job start Sun Mar 29 2020 22:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47146 * 2 1 4 4 C 1.52995 * 109.47066 * 120.00070 * 2 1 3 5 5 N 1.46905 * 109.47480 * 175.00053 * 4 2 1 6 6 C 1.48537 * 110.99725 * 307.39694 * 5 4 2 7 7 C 1.55188 * 103.23604 * 200.25613 * 6 5 4 8 8 C 1.54596 * 102.80434 * 37.42997 * 7 6 5 9 9 O 1.42903 * 110.30251 * 96.98290 * 8 7 6 10 10 C 1.50693 * 110.31037 * 219.04695 * 8 7 6 11 11 H 1.08003 * 119.99913 * 117.21340 * 10 8 7 12 12 C 1.37879 * 120.00494 * 297.21578 * 10 8 7 13 13 N 1.31515 * 119.99754 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 120.00051 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47401 * 59.99719 * 14 12 10 16 16 H 1.48502 * 109.47138 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47267 * 299.99715 * 14 12 10 18 18 C 1.47904 * 111.00043 * 190.00113 * 5 4 2 19 19 H 1.08998 * 109.46789 * 300.00167 * 1 2 3 20 20 H 1.09003 * 109.47171 * 60.00198 * 1 2 3 21 21 H 1.08997 * 109.47179 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46789 * 239.99833 * 2 1 3 23 23 H 1.08994 * 109.47136 * 300.00010 * 3 2 1 24 24 H 1.08998 * 109.47413 * 60.00215 * 3 2 1 25 25 H 1.09001 * 109.47367 * 180.02562 * 3 2 1 26 26 H 1.09007 * 109.47287 * 55.00061 * 4 2 1 27 27 H 1.09006 * 109.47333 * 294.99981 * 4 2 1 28 28 H 1.09006 * 110.66402 * 318.71618 * 6 5 4 29 29 H 1.08997 * 110.66804 * 81.67515 * 6 5 4 30 30 H 1.09006 * 110.75948 * 279.12167 * 7 6 5 31 31 H 1.09001 * 110.79942 * 155.76297 * 7 6 5 32 32 H 0.96700 * 114.00311 * 62.79331 * 9 8 7 33 33 H 0.96995 * 119.99733 * 180.02562 * 13 12 10 34 34 H 1.08997 * 109.91742 * 26.48837 * 18 5 4 35 35 H 1.08994 * 110.07733 * 265.28600 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5041 -0.8267 1.1905 6 6 3.9431 -1.4316 -0.0932 7 6 5.3746 -1.9397 0.2246 8 6 5.2421 -2.4505 1.6777 9 8 5.0295 -3.8635 1.6892 10 6 6.4761 -2.1017 2.4693 11 1 6.4027 -1.4415 3.3209 12 6 7.6989 -2.6254 2.1064 13 7 7.7882 -3.4297 1.0697 14 14 9.2283 -2.1936 3.0881 15 1 9.0534 -2.6329 4.4959 16 1 10.4054 -2.8805 2.4984 17 1 9.4420 -0.7245 3.0510 18 6 4.0142 -1.7205 2.2527 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.6767 1.9563 -0.8899 24 1 1.6768 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6054 -1.7199 1.2951 27 1 1.7516 -0.1583 2.1370 28 1 3.2925 -2.2614 -0.3697 29 1 3.9653 -0.6819 -0.8840 30 1 6.0957 -1.1243 0.1666 31 1 5.6547 -2.7521 -0.4459 32 1 5.7620 -4.3746 1.3185 33 1 8.6484 -3.7984 0.8147 34 1 3.2474 -2.4444 2.5288 35 1 4.3046 -1.1363 3.1258 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146897.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:42 Heat of formation + Delta-G solvation = -61.956551 kcal Electronic energy + Delta-G solvation = -15092.912136 eV Core-core repulsion = 12704.193911 eV Total energy + Delta-G solvation = -2388.718225 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.61775 -35.99800 -33.64573 -32.04746 -29.44626 -28.01022 -26.91650 -25.34074 -23.59603 -21.05953 -19.41471 -18.97413 -17.04097 -15.54782 -15.04769 -14.74616 -14.35307 -13.87450 -13.50784 -13.05005 -12.91213 -12.19368 -12.02882 -11.89341 -11.51833 -11.43641 -11.21744 -10.92083 -10.76294 -10.52368 -10.51264 -10.44332 -10.28428 -10.12168 -9.83398 -9.09312 -8.54072 -8.05652 -7.68075 -6.15311 -4.21327 3.28647 3.32742 3.36346 4.35808 4.64450 5.02720 5.13877 5.14922 5.39557 5.70447 5.76664 5.84702 5.86075 5.90583 6.03049 6.11289 6.17993 6.19919 6.28908 6.30310 6.50580 6.52745 6.57586 6.66895 6.99289 7.12492 7.36214 7.58016 7.73412 7.80315 7.91036 8.22159 8.80059 9.45253 9.55762 10.92337 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.053810 B = 0.007728 C = 0.007477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.229070 B = 3622.223705 C = 3743.812163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.137 4.137 4 C 0.051 3.949 5 N -0.512 5.512 6 C 0.032 3.968 7 C -0.117 4.117 8 C 0.242 3.758 9 O -0.595 6.595 10 C -0.527 4.527 11 H 0.061 0.939 12 C 0.067 3.933 13 N -0.900 5.900 14 Si 0.900 3.100 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.054 3.946 19 H 0.053 0.947 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.028 0.972 27 H 0.068 0.932 28 H 0.031 0.969 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.382 0.618 33 H 0.266 0.734 34 H 0.034 0.966 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.935 5.016 -2.717 10.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.194 4.194 4 C -0.077 4.077 5 N -0.236 5.236 6 C -0.096 4.096 7 C -0.156 4.156 8 C 0.202 3.798 9 O -0.405 6.405 10 C -0.566 4.566 11 H 0.079 0.921 12 C -0.134 4.134 13 N -0.541 5.541 14 Si 0.728 3.272 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.073 4.073 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.088 0.912 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.233 0.767 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.173 5.621 -2.473 11.039 hybrid contribution 1.049 -0.784 0.132 1.316 sum -8.124 4.837 -2.341 9.741 Atomic orbital electron populations 1.21818 0.95678 1.01352 1.01430 1.21195 0.94780 0.97261 0.98454 1.21719 1.02493 0.94911 1.00319 1.22343 0.89330 0.98300 0.97764 1.64808 1.08515 1.46761 1.03565 1.23324 0.98080 0.96203 0.91991 1.23006 0.92749 1.00371 0.99437 1.19367 0.90796 0.78783 0.90822 1.86093 1.47913 1.19839 1.86634 1.21670 0.92122 1.28829 1.13955 0.92090 1.25014 0.99125 0.94504 0.94749 1.69653 1.25877 1.32448 1.26092 0.86525 0.81778 0.78672 0.80250 1.20171 1.21240 1.20116 1.22853 0.96718 0.93302 0.94460 0.92828 0.92876 0.93036 0.91159 0.93874 0.93221 0.91283 0.95388 0.91404 0.95098 0.91758 0.91465 0.91805 0.76736 0.92369 0.94798 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 37.16 0.34 -1.30 16 2 C -0.10 -1.36 2.60 -90.62 -0.24 -1.59 16 3 C -0.14 -1.82 9.08 37.16 0.34 -1.48 16 4 C 0.05 0.84 4.42 -3.82 -0.02 0.83 16 5 N -0.51 -10.17 4.85 -230.28 -1.12 -11.29 16 6 C 0.03 0.63 5.10 -1.76 -0.01 0.63 16 7 C -0.12 -2.78 5.42 -24.73 -0.13 -2.91 16 8 C 0.24 6.19 0.99 -90.42 -0.09 6.10 16 9 O -0.60 -15.92 12.92 -35.23 -0.46 -16.38 16 10 C -0.53 -14.48 8.11 -34.44 -0.28 -14.76 16 11 H 0.06 1.67 7.34 -52.48 -0.39 1.28 16 12 C 0.07 1.82 5.26 -17.82 -0.09 1.73 16 13 N -0.90 -24.45 10.87 55.43 0.60 -23.85 16 14 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 C 0.05 1.23 6.17 -2.75 -0.02 1.21 16 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.07 1.02 6.51 -51.93 -0.34 0.68 16 23 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 1.05 7.75 -51.93 -0.40 0.65 16 26 H 0.03 0.48 7.81 -51.92 -0.41 0.07 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.03 0.62 8.01 -51.93 -0.42 0.20 16 29 H 0.06 1.17 7.55 -51.93 -0.39 0.78 16 30 H 0.07 1.69 7.86 -51.93 -0.41 1.28 16 31 H 0.06 1.57 8.01 -51.93 -0.42 1.15 16 32 H 0.38 10.31 7.18 45.56 0.33 10.64 16 33 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.03 0.76 7.39 -51.93 -0.38 0.38 16 35 H 0.08 1.75 7.39 -51.93 -0.38 1.37 16 LS Contribution 275.81 15.07 4.16 4.16 Total: -1.00 -27.46 275.81 -7.31 -34.77 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.28 Total: 8.13 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -0.20 Total: -11.57 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.51 Total: -35.14 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.46 Total: -16.38 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.46 -7.31 -34.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146897.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.189 kcal (2) G-P(sol) polarization free energy of solvation -27.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds