Wall clock time and date at job start Sun Mar 29 2020 22:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46801 * 2 1 4 4 C 1.52998 * 109.47284 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47221 * 179.97438 * 4 3 2 6 6 C 1.48532 * 111.00191 * 287.39183 * 5 4 3 7 7 C 1.55099 * 103.28763 * 200.33289 * 6 5 4 8 8 C 1.54595 * 102.84477 * 37.30551 * 7 6 5 9 9 O 1.42903 * 110.30748 * 97.11626 * 8 7 6 10 10 C 1.50697 * 110.31397 * 219.18829 * 8 7 6 11 11 H 1.07991 * 120.00449 * 116.93346 * 10 8 7 12 12 C 1.37885 * 119.99686 * 297.21177 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 8 15 15 H 1.48498 * 109.47416 * 59.99812 * 14 12 10 16 16 H 1.48508 * 109.46609 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46903 * 299.99397 * 14 12 10 18 18 C 1.47904 * 110.99813 * 169.99791 * 5 4 3 19 19 H 1.09002 * 109.46614 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47309 * 300.00370 * 1 2 3 21 21 H 1.09000 * 109.47159 * 60.00330 * 1 2 3 22 22 H 1.08995 * 109.47129 * 240.00337 * 2 1 3 23 23 H 1.09000 * 109.47159 * 119.99670 * 2 1 3 24 24 H 1.09001 * 109.47491 * 59.99742 * 3 2 1 25 25 H 1.09000 * 109.46995 * 299.99770 * 3 2 1 26 26 H 1.09001 * 109.47166 * 59.99423 * 4 3 2 27 27 H 1.09000 * 109.46819 * 299.99758 * 4 3 2 28 28 H 1.08995 * 110.66548 * 318.71782 * 6 5 4 29 29 H 1.09006 * 110.66473 * 81.68054 * 6 5 4 30 30 H 1.09000 * 110.70984 * 278.99981 * 7 6 5 31 31 H 1.08998 * 110.81387 * 155.66151 * 7 6 5 32 32 H 0.96702 * 113.99834 * 62.79041 * 9 8 7 33 33 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.91695 * 26.49159 * 18 5 4 35 35 H 1.09006 * 109.91704 * 265.19556 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 7 4.0595 2.8277 -0.0013 6 6 3.8456 3.4673 -1.3246 7 6 4.8496 4.6494 -1.3157 8 6 6.0725 4.0561 -0.5792 9 8 7.0434 3.5956 -1.5213 10 6 6.6815 5.0857 0.3373 11 1 6.6968 4.9176 1.4040 12 6 7.2141 6.2451 -0.1856 13 7 7.1955 6.4498 -1.4846 14 14 7.9621 7.5248 0.9511 15 1 9.0899 6.9196 1.7040 16 1 8.4605 8.6698 0.1474 17 1 6.9297 8.0029 1.9056 18 6 5.5183 2.8742 0.2379 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6766 1.9564 0.8899 25 1 1.6766 1.9563 -0.8900 26 1 3.9329 0.9289 -0.8908 27 1 3.9336 0.9288 0.8891 28 1 4.0795 2.7716 -2.1304 29 1 2.8214 3.8294 -1.4158 30 1 4.4419 5.4973 -0.7652 31 1 5.1151 4.9398 -2.3322 32 1 7.4120 4.2940 -2.0793 33 1 7.5705 7.2653 -1.8524 34 1 5.9790 1.9442 -0.0949 35 1 5.7159 3.0310 1.2984 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:48 Heat of formation + Delta-G solvation = -66.391190 kcal Electronic energy + Delta-G solvation = -14774.143735 eV Core-core repulsion = 12385.233210 eV Total energy + Delta-G solvation = -2388.910526 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.42225 -35.71723 -33.98072 -32.04810 -30.32914 -28.12017 -27.29233 -24.45081 -22.63288 -21.07508 -20.00310 -19.28420 -17.03868 -15.46643 -15.16689 -14.84924 -14.48582 -13.92823 -13.62640 -13.41022 -12.64566 -12.38287 -12.19214 -11.97817 -11.49774 -11.30756 -11.17058 -10.98579 -10.78808 -10.62960 -10.54613 -10.45703 -10.22972 -10.17780 -9.85272 -9.09662 -8.54097 -8.06524 -7.71399 -6.15504 -4.21521 3.28764 3.32778 3.36419 4.35683 4.56890 5.02639 5.12029 5.15441 5.22481 5.47881 5.71867 5.76150 5.82634 5.90364 5.92383 6.05201 6.11468 6.13265 6.20152 6.29700 6.43789 6.45694 6.54694 6.59924 6.98437 7.11924 7.35550 7.57193 7.72926 7.79627 7.90474 8.21775 8.79855 9.45021 9.55715 10.92210 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.058961 B = 0.006629 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.776038 B = 4222.704429 C = 4320.039490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.112 4.112 4 C 0.046 3.954 5 N -0.516 5.516 6 C 0.032 3.968 7 C -0.117 4.117 8 C 0.242 3.758 9 O -0.595 6.595 10 C -0.528 4.528 11 H 0.061 0.939 12 C 0.068 3.932 13 N -0.900 5.900 14 Si 0.900 3.100 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.054 3.946 19 H 0.050 0.950 20 H 0.053 0.947 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.028 0.972 27 H 0.066 0.934 28 H 0.031 0.969 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.382 0.618 33 H 0.266 0.734 34 H 0.034 0.966 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.517 -7.634 0.825 11.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.082 4.082 5 N -0.240 5.240 6 C -0.096 4.096 7 C -0.156 4.156 8 C 0.202 3.798 9 O -0.405 6.405 10 C -0.566 4.566 11 H 0.079 0.921 12 C -0.134 4.134 13 N -0.541 5.541 14 Si 0.728 3.272 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.073 4.073 19 H 0.069 0.931 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.233 0.767 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.878 -7.810 1.385 11.905 hybrid contribution 0.944 0.855 -0.354 1.321 sum -7.934 -6.955 1.031 10.601 Atomic orbital electron populations 1.21758 0.96071 1.01134 1.01811 1.21509 0.95633 0.97343 1.01727 1.21553 0.95141 0.95818 1.02528 1.22265 0.95170 0.90697 1.00116 1.64761 1.15323 1.14755 1.29207 1.23336 0.99670 0.97279 0.89320 1.22998 0.95926 0.95774 1.00916 1.19364 0.85424 0.88924 0.86055 1.86093 1.60274 1.40604 1.53504 1.21670 1.38572 1.02601 0.93794 0.92062 1.25014 0.95140 0.97891 0.95305 1.69651 1.46119 1.27442 1.10859 0.86522 0.79570 0.80524 0.80592 1.20150 1.21235 1.20109 1.22840 0.85758 0.98152 1.00569 0.93124 0.92746 0.92863 0.92362 0.92160 0.91347 0.92215 0.95331 0.91591 0.95043 0.91838 0.91446 0.91750 0.76706 0.92359 0.94764 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.12 -1.39 5.93 -26.73 -0.16 -1.55 16 3 C -0.11 -1.55 5.31 -26.73 -0.14 -1.69 16 4 C 0.05 0.76 4.71 -3.83 -0.02 0.75 16 5 N -0.52 -10.44 5.25 -230.34 -1.21 -11.64 16 6 C 0.03 0.64 5.91 -1.81 -0.01 0.63 16 7 C -0.12 -2.81 5.42 -24.78 -0.13 -2.95 16 8 C 0.24 6.22 0.99 -90.41 -0.09 6.13 16 9 O -0.60 -15.96 12.92 -35.23 -0.46 -16.42 16 10 C -0.53 -14.55 8.11 -34.44 -0.28 -14.83 16 11 H 0.06 1.68 7.34 -52.49 -0.39 1.29 16 12 C 0.07 1.83 5.26 -17.82 -0.09 1.74 16 13 N -0.90 -24.48 10.88 55.43 0.60 -23.88 16 14 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 C 0.05 1.24 6.13 -2.75 -0.02 1.22 16 19 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.06 0.84 7.36 -51.93 -0.38 0.46 16 26 H 0.03 0.48 7.83 -51.93 -0.41 0.07 16 27 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 28 H 0.03 0.63 7.81 -51.93 -0.41 0.23 16 29 H 0.06 1.17 7.80 -51.93 -0.40 0.77 16 30 H 0.07 1.71 7.86 -51.93 -0.41 1.30 16 31 H 0.06 1.59 8.02 -51.93 -0.42 1.17 16 32 H 0.38 10.33 7.18 45.56 0.33 10.66 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.03 0.77 7.59 -51.93 -0.39 0.38 16 35 H 0.08 1.77 7.39 -51.93 -0.38 1.39 16 LS Contribution 279.00 15.07 4.20 4.20 Total: -1.00 -27.69 279.00 -7.80 -35.49 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.35 Total: 7.85 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.57 Total: -11.64 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.61 Total: -35.52 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.46 Total: -16.42 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.69 -7.80 -35.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.900 kcal (2) G-P(sol) polarization free energy of solvation -27.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds