Wall clock time and date at job start Sun Mar 29 2020 22:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46801 * 2 1 4 4 C 1.52998 * 109.47284 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47221 * 179.97438 * 4 3 2 6 6 C 1.48532 * 111.00191 * 287.39183 * 5 4 3 7 7 C 1.55099 * 103.28763 * 200.33289 * 6 5 4 8 8 C 1.54595 * 102.84477 * 37.30551 * 7 6 5 9 9 O 1.42903 * 110.30748 * 97.11626 * 8 7 6 10 10 C 1.50697 * 110.31397 * 219.18829 * 8 7 6 11 11 H 1.07991 * 120.00449 * 116.93346 * 10 8 7 12 12 C 1.37885 * 119.99686 * 297.21177 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 8 15 15 H 1.48498 * 109.47416 * 59.99812 * 14 12 10 16 16 H 1.48508 * 109.46609 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46903 * 299.99397 * 14 12 10 18 18 C 1.47904 * 110.99813 * 169.99791 * 5 4 3 19 19 H 1.09002 * 109.46614 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47309 * 300.00370 * 1 2 3 21 21 H 1.09000 * 109.47159 * 60.00330 * 1 2 3 22 22 H 1.08995 * 109.47129 * 240.00337 * 2 1 3 23 23 H 1.09000 * 109.47159 * 119.99670 * 2 1 3 24 24 H 1.09001 * 109.47491 * 59.99742 * 3 2 1 25 25 H 1.09000 * 109.46995 * 299.99770 * 3 2 1 26 26 H 1.09001 * 109.47166 * 59.99423 * 4 3 2 27 27 H 1.09000 * 109.46819 * 299.99758 * 4 3 2 28 28 H 1.08995 * 110.66548 * 318.71782 * 6 5 4 29 29 H 1.09006 * 110.66473 * 81.68054 * 6 5 4 30 30 H 1.09000 * 110.70984 * 278.99981 * 7 6 5 31 31 H 1.08998 * 110.81387 * 155.66151 * 7 6 5 32 32 H 0.96702 * 113.99834 * 62.79041 * 9 8 7 33 33 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.91695 * 26.49159 * 18 5 4 35 35 H 1.09006 * 109.91704 * 265.19556 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 7 4.0595 2.8277 -0.0013 6 6 3.8456 3.4673 -1.3246 7 6 4.8496 4.6494 -1.3157 8 6 6.0725 4.0561 -0.5792 9 8 7.0434 3.5956 -1.5213 10 6 6.6815 5.0857 0.3373 11 1 6.6968 4.9176 1.4040 12 6 7.2141 6.2451 -0.1856 13 7 7.1955 6.4498 -1.4846 14 14 7.9621 7.5248 0.9511 15 1 9.0899 6.9196 1.7040 16 1 8.4605 8.6698 0.1474 17 1 6.9297 8.0029 1.9056 18 6 5.5183 2.8742 0.2379 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6766 1.9564 0.8899 25 1 1.6766 1.9563 -0.8900 26 1 3.9329 0.9289 -0.8908 27 1 3.9336 0.9288 0.8891 28 1 4.0795 2.7716 -2.1304 29 1 2.8214 3.8294 -1.4158 30 1 4.4419 5.4973 -0.7652 31 1 5.1151 4.9398 -2.3322 32 1 7.4120 4.2940 -2.0793 33 1 7.5705 7.2653 -1.8524 34 1 5.9790 1.9442 -0.0949 35 1 5.7159 3.0310 1.2984 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:48 Heat of formation + Delta-G solvation = -85.513252 kcal Electronic energy + Delta-G solvation = -14774.972930 eV Core-core repulsion = 12385.233210 eV Total energy + Delta-G solvation = -2389.739721 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.16678 -37.25990 -35.39952 -34.14896 -31.85233 -29.91179 -28.79905 -26.29767 -23.99320 -22.27219 -21.51442 -21.17406 -19.10604 -16.99548 -16.87385 -16.48069 -16.09652 -15.77827 -14.96761 -14.67800 -14.17700 -13.91225 -13.73001 -13.53284 -13.21818 -13.00928 -12.77032 -12.50595 -12.39611 -12.24481 -12.00776 -11.94210 -11.80707 -11.58631 -11.37494 -11.03999 -10.60036 -10.11363 -9.33984 -8.21161 -6.35211 1.42676 1.43096 1.51275 2.39959 2.98116 3.13840 3.87146 3.98565 4.09851 4.21534 4.32020 4.35633 4.46386 4.51259 4.57664 4.69162 4.78214 4.84440 4.96029 5.02572 5.09326 5.13739 5.22700 5.31922 5.39492 5.44229 5.51830 5.59528 5.76747 5.99042 6.15728 6.26769 6.68919 7.34369 7.43191 8.84890 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.058961 B = 0.006629 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.776038 B = 4222.704429 C = 4320.039490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.105 4.105 4 C 0.045 3.955 5 N -0.521 5.521 6 C 0.043 3.957 7 C -0.111 4.111 8 C 0.225 3.775 9 O -0.603 6.603 10 C -0.557 4.557 11 H 0.054 0.946 12 C 0.028 3.972 13 N -0.915 5.915 14 Si 0.961 3.039 15 H -0.274 1.274 16 H -0.280 1.280 17 H -0.273 1.273 18 C 0.061 3.939 19 H 0.064 0.936 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.035 0.965 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.377 0.623 33 H 0.269 0.731 34 H 0.033 0.967 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.499 -8.137 1.270 12.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.143 4.143 4 C -0.083 4.083 5 N -0.245 5.245 6 C -0.085 4.085 7 C -0.149 4.149 8 C 0.185 3.815 9 O -0.412 6.412 10 C -0.595 4.595 11 H 0.072 0.928 12 C -0.172 4.172 13 N -0.555 5.555 14 Si 0.786 3.214 15 H -0.199 1.199 16 H -0.205 1.205 17 H -0.198 1.198 18 C -0.067 4.067 19 H 0.083 0.917 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.227 0.773 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.874 -8.328 1.829 13.046 hybrid contribution 1.257 0.993 -0.505 1.679 sum -8.617 -7.335 1.324 11.394 Atomic orbital electron populations 1.21743 0.94818 1.02126 1.01927 1.21479 0.96681 0.95457 1.02197 1.21503 0.92876 0.97664 1.02256 1.22402 0.97027 0.88419 1.00491 1.64772 1.13352 1.17351 1.29020 1.23243 0.99794 0.95813 0.89616 1.22786 0.96358 0.96448 0.99346 1.19639 0.85646 0.90045 0.86145 1.86084 1.60823 1.40561 1.53693 1.21930 1.39866 1.03873 0.93827 0.92817 1.25710 0.95308 0.99481 0.96732 1.69732 1.46042 1.27835 1.11919 0.85570 0.78711 0.78231 0.78842 1.19938 1.20470 1.19776 1.22684 0.87479 0.96850 0.99685 0.91735 0.92600 0.92827 0.92080 0.91559 0.91648 0.92439 0.95352 0.90784 0.94655 0.89490 0.93422 0.93198 0.77298 0.92139 0.94898 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.91 71.98 0.71 -1.78 16 2 C -0.12 -2.38 5.93 30.60 0.18 -2.20 16 3 C -0.11 -2.65 5.31 30.59 0.16 -2.49 16 4 C 0.04 1.39 4.71 86.30 0.41 1.80 16 5 N -0.52 -20.44 5.25 -882.67 -4.63 -25.08 16 6 C 0.04 1.70 5.91 86.71 0.51 2.21 16 7 C -0.11 -5.33 5.42 31.86 0.17 -5.16 16 8 C 0.22 11.65 0.99 -10.66 -0.01 11.64 16 9 O -0.60 -32.75 12.92 -148.98 -1.93 -34.67 16 10 C -0.56 -31.00 8.11 25.60 0.21 -30.80 16 11 H 0.05 2.98 7.34 -2.92 -0.02 2.96 16 12 C 0.03 1.50 5.26 84.66 0.45 1.94 16 13 N -0.92 -50.02 10.88 21.45 0.23 -49.78 16 14 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 C 0.06 2.77 6.13 86.45 0.53 3.30 16 19 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 20 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 21 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.48 7.36 -2.39 -0.02 1.46 16 26 H 0.03 0.89 7.83 -2.39 -0.02 0.87 16 27 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 28 H 0.04 1.37 7.81 -2.39 -0.02 1.35 16 29 H 0.09 3.04 7.80 -2.38 -0.02 3.02 16 30 H 0.05 2.44 7.86 -2.39 -0.02 2.42 16 31 H 0.05 2.50 8.02 -2.39 -0.02 2.48 16 32 H 0.38 20.82 7.18 -74.06 -0.53 20.29 16 33 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 34 H 0.03 1.47 7.59 -2.39 -0.02 1.46 16 35 H 0.07 3.31 7.39 -2.38 -0.02 3.29 16 Total: -1.00 -57.91 279.00 -0.46 -58.37 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.51 Total: 27.60 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 3.32 Total: -21.53 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -4.40 Total: -74.86 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -1.93 Total: -34.67 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -57.91 -0.46 -58.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.144 kcal (2) G-P(sol) polarization free energy of solvation -57.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds