Wall clock time and date at job start Sun Mar 29 2020 22:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47583 * 2 1 4 4 C 1.52999 * 109.47231 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.46697 * 180.02562 * 4 3 2 6 6 C 1.48720 * 111.01831 * 74.48907 * 5 4 3 7 7 C 1.54381 * 104.51692 * 158.96284 * 6 5 4 8 8 C 1.54257 * 105.14978 * 336.27274 * 7 6 5 9 9 O 1.42906 * 110.32239 * 240.94794 * 8 7 6 10 10 C 1.50697 * 110.32628 * 118.84329 * 8 7 6 11 11 H 1.07995 * 120.00073 * 241.44522 * 10 8 7 12 12 C 1.37883 * 119.99811 * 61.45328 * 10 8 7 13 13 N 1.31514 * 119.99933 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 119.99722 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47538 * 0.02562 * 14 12 10 16 16 H 1.48510 * 109.46864 * 119.99931 * 14 12 10 17 17 H 1.48499 * 109.47368 * 239.99818 * 14 12 10 18 18 C 1.48567 * 110.99718 * 189.99889 * 5 4 3 19 19 H 1.08997 * 109.47225 * 300.00479 * 1 2 3 20 20 H 1.09004 * 109.46572 * 59.99787 * 1 2 3 21 21 H 1.09002 * 109.47497 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47611 * 239.99797 * 2 1 3 23 23 H 1.09002 * 109.47084 * 120.00168 * 2 1 3 24 24 H 1.09001 * 109.46812 * 59.99308 * 3 2 1 25 25 H 1.08997 * 109.46710 * 299.99867 * 3 2 1 26 26 H 1.08997 * 109.47422 * 59.99616 * 4 3 2 27 27 H 1.08999 * 109.46632 * 299.99620 * 4 3 2 28 28 H 1.09004 * 110.38960 * 40.24251 * 6 5 4 29 29 H 1.08996 * 110.50963 * 277.74694 * 6 5 4 30 30 H 1.09002 * 110.32526 * 217.32092 * 7 6 5 31 31 H 1.08998 * 110.32190 * 95.21733 * 7 6 5 32 32 H 0.96695 * 113.99929 * 298.55053 * 9 8 7 33 33 H 0.97002 * 119.99478 * 180.02562 * 13 12 10 34 34 H 1.08999 * 110.41133 * 82.17552 * 18 5 4 35 35 H 1.09001 * 110.41003 * 319.73948 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0597 2.8274 0.0000 6 6 3.8881 3.4532 1.3381 7 6 4.8908 4.6270 1.3479 8 6 5.9662 4.2472 0.3092 9 8 7.2467 4.1448 0.9353 10 6 6.0066 5.2672 -0.7994 11 1 5.7911 4.9699 -1.8149 12 6 6.3190 6.5802 -0.5170 13 7 6.5822 6.9422 0.7197 14 14 6.3699 7.8444 -1.8912 15 1 6.0385 7.1872 -3.1810 16 1 5.3806 8.9168 -1.6141 17 1 7.7302 8.4345 -1.9709 18 6 5.5249 2.8741 -0.2414 19 1 -0.3633 0.5139 0.8899 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 1.6767 1.9563 0.8899 25 1 1.6768 1.9563 -0.8900 26 1 3.9330 0.9286 -0.8908 27 1 3.9337 0.9285 0.8892 28 1 4.1309 2.7393 2.1252 29 1 2.8697 3.8223 1.4593 30 1 5.3393 4.7336 2.3356 31 1 4.3934 5.5522 1.0568 32 1 7.5545 4.9683 1.3380 33 1 6.8015 7.8659 0.9183 34 1 5.7367 2.8065 -1.3085 35 1 6.0249 2.0696 0.2979 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148370.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:51 Heat of formation + Delta-G solvation = -65.026809 kcal Electronic energy + Delta-G solvation = -14798.143493 eV Core-core repulsion = 12409.292131 eV Total energy + Delta-G solvation = -2388.851362 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.39799 -35.72243 -34.01494 -32.04996 -30.34292 -28.07082 -27.19611 -24.48978 -22.65915 -21.05371 -20.02198 -19.27683 -16.96820 -15.49455 -15.20786 -14.79838 -14.47305 -13.86578 -13.69393 -13.32049 -12.58326 -12.51105 -12.24546 -12.00941 -11.51869 -11.29916 -11.13146 -10.95834 -10.79725 -10.66621 -10.49138 -10.38699 -10.23190 -10.17363 -9.84477 -8.97595 -8.52351 -8.07033 -7.74934 -6.11856 -4.17034 3.27954 3.36123 3.41793 4.39398 4.54002 5.02939 5.13576 5.17260 5.23362 5.47558 5.70473 5.77871 5.82373 5.90042 5.92250 6.01794 6.09546 6.12226 6.21379 6.25615 6.41536 6.45111 6.57347 6.58495 6.92703 7.12746 7.28678 7.62409 7.73188 7.79850 7.91859 8.27780 8.85842 9.47580 9.56439 10.95786 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043635 B = 0.007250 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.528504 B = 3861.309410 C = 4116.871421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.112 4.112 4 C 0.044 3.956 5 N -0.502 5.502 6 C 0.033 3.967 7 C -0.121 4.121 8 C 0.248 3.752 9 O -0.595 6.595 10 C -0.516 4.516 11 H 0.062 0.938 12 C 0.064 3.936 13 N -0.901 5.901 14 Si 0.899 3.101 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.053 3.947 19 H 0.052 0.948 20 H 0.054 0.946 21 H 0.050 0.950 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.382 0.618 33 H 0.264 0.736 34 H 0.075 0.925 35 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.632 -8.707 0.477 11.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.085 4.085 5 N -0.227 5.227 6 C -0.095 4.095 7 C -0.160 4.160 8 C 0.208 3.792 9 O -0.404 6.404 10 C -0.554 4.554 11 H 0.081 0.919 12 C -0.136 4.136 13 N -0.542 5.542 14 Si 0.727 3.273 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.075 4.075 19 H 0.071 0.929 20 H 0.073 0.927 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.232 0.768 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.929 -8.894 -0.052 11.915 hybrid contribution 0.451 0.904 0.200 1.030 sum -7.479 -7.989 0.148 10.945 Atomic orbital electron populations 1.21756 0.96066 1.01117 1.01847 1.21508 0.95652 0.97343 1.01676 1.21542 0.95059 0.95785 1.02643 1.22269 0.95347 0.90773 1.00091 1.65313 1.15087 1.14719 1.27551 1.23184 1.00073 0.97068 0.89154 1.22850 0.97036 0.96844 0.99243 1.19276 0.80481 0.89997 0.89472 1.86083 1.37605 1.40112 1.76622 1.21695 1.46237 0.92971 0.94544 0.91947 1.25013 0.94443 0.98427 0.95756 1.69712 1.48193 1.18278 1.18033 0.86420 0.77512 0.81044 0.82301 1.19688 1.21007 1.21025 1.22974 0.86251 0.97743 1.00514 0.92861 0.92720 0.93138 0.92160 0.92420 0.92213 0.91235 0.91501 0.95457 0.95504 0.91689 0.93191 0.90671 0.76789 0.92580 0.90622 0.95283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.39 5.93 -26.73 -0.16 -1.54 16 3 C -0.11 -1.56 5.33 -26.73 -0.14 -1.70 16 4 C 0.04 0.72 4.83 -3.82 -0.02 0.70 16 5 N -0.50 -10.23 5.34 -229.83 -1.23 -11.45 16 6 C 0.03 0.67 5.93 -2.09 -0.01 0.66 16 7 C -0.12 -2.90 5.55 -25.35 -0.14 -3.04 16 8 C 0.25 6.36 1.05 -90.39 -0.10 6.27 16 9 O -0.60 -15.93 12.94 -35.23 -0.46 -16.39 16 10 C -0.52 -14.28 8.10 -34.44 -0.28 -14.56 16 11 H 0.06 1.75 7.53 -52.49 -0.40 1.35 16 12 C 0.06 1.75 5.02 -17.82 -0.09 1.66 16 13 N -0.90 -24.63 10.81 55.43 0.60 -24.03 16 14 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.05 1.20 5.74 -2.18 -0.01 1.19 16 19 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.85 7.47 -51.93 -0.39 0.46 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 27 H 0.03 0.44 7.77 -51.93 -0.40 0.04 16 28 H 0.03 0.52 7.75 -51.93 -0.40 0.11 16 29 H 0.06 1.22 7.86 -51.93 -0.41 0.81 16 30 H 0.05 1.20 7.98 -51.93 -0.41 0.79 16 31 H 0.07 1.96 7.23 -51.93 -0.38 1.58 16 32 H 0.38 10.28 7.32 45.56 0.33 10.62 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.08 1.72 7.67 -51.93 -0.40 1.32 16 35 H 0.03 0.64 7.94 -51.93 -0.41 0.23 16 LS Contribution 279.11 15.07 4.21 4.21 Total: -1.00 -27.92 279.11 -7.83 -35.76 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.36 Total: 7.15 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -0.58 Total: -11.48 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.63 Total: -35.48 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.46 Total: -16.39 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.92 -7.83 -35.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148370.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.268 kcal (2) G-P(sol) polarization free energy of solvation -27.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds