Wall clock time and date at job start Sun Mar 29 2020 22:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47583 * 2 1 4 4 C 1.52999 * 109.47231 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.46697 * 180.02562 * 4 3 2 6 6 C 1.48720 * 111.01831 * 74.48907 * 5 4 3 7 7 C 1.54381 * 104.51692 * 158.96284 * 6 5 4 8 8 C 1.54257 * 105.14978 * 336.27274 * 7 6 5 9 9 O 1.42906 * 110.32239 * 240.94794 * 8 7 6 10 10 C 1.50697 * 110.32628 * 118.84329 * 8 7 6 11 11 H 1.07995 * 120.00073 * 241.44522 * 10 8 7 12 12 C 1.37883 * 119.99811 * 61.45328 * 10 8 7 13 13 N 1.31514 * 119.99933 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 119.99722 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47538 * 0.02562 * 14 12 10 16 16 H 1.48510 * 109.46864 * 119.99931 * 14 12 10 17 17 H 1.48499 * 109.47368 * 239.99818 * 14 12 10 18 18 C 1.48567 * 110.99718 * 189.99889 * 5 4 3 19 19 H 1.08997 * 109.47225 * 300.00479 * 1 2 3 20 20 H 1.09004 * 109.46572 * 59.99787 * 1 2 3 21 21 H 1.09002 * 109.47497 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47611 * 239.99797 * 2 1 3 23 23 H 1.09002 * 109.47084 * 120.00168 * 2 1 3 24 24 H 1.09001 * 109.46812 * 59.99308 * 3 2 1 25 25 H 1.08997 * 109.46710 * 299.99867 * 3 2 1 26 26 H 1.08997 * 109.47422 * 59.99616 * 4 3 2 27 27 H 1.08999 * 109.46632 * 299.99620 * 4 3 2 28 28 H 1.09004 * 110.38960 * 40.24251 * 6 5 4 29 29 H 1.08996 * 110.50963 * 277.74694 * 6 5 4 30 30 H 1.09002 * 110.32526 * 217.32092 * 7 6 5 31 31 H 1.08998 * 110.32190 * 95.21733 * 7 6 5 32 32 H 0.96695 * 113.99929 * 298.55053 * 9 8 7 33 33 H 0.97002 * 119.99478 * 180.02562 * 13 12 10 34 34 H 1.08999 * 110.41133 * 82.17552 * 18 5 4 35 35 H 1.09001 * 110.41003 * 319.73948 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0597 2.8274 0.0000 6 6 3.8881 3.4532 1.3381 7 6 4.8908 4.6270 1.3479 8 6 5.9662 4.2472 0.3092 9 8 7.2467 4.1448 0.9353 10 6 6.0066 5.2672 -0.7994 11 1 5.7911 4.9699 -1.8149 12 6 6.3190 6.5802 -0.5170 13 7 6.5822 6.9422 0.7197 14 14 6.3699 7.8444 -1.8912 15 1 6.0385 7.1872 -3.1810 16 1 5.3806 8.9168 -1.6141 17 1 7.7302 8.4345 -1.9709 18 6 5.5249 2.8741 -0.2414 19 1 -0.3633 0.5139 0.8899 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 1.6767 1.9563 0.8899 25 1 1.6768 1.9563 -0.8900 26 1 3.9330 0.9286 -0.8908 27 1 3.9337 0.9285 0.8892 28 1 4.1309 2.7393 2.1252 29 1 2.8697 3.8223 1.4593 30 1 5.3393 4.7336 2.3356 31 1 4.3934 5.5522 1.0568 32 1 7.5545 4.9683 1.3380 33 1 6.8015 7.8659 0.9183 34 1 5.7367 2.8065 -1.3085 35 1 6.0249 2.0696 0.2979 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148370.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:50 Heat of formation + Delta-G solvation = -84.491540 kcal Electronic energy + Delta-G solvation = -14798.987547 eV Core-core repulsion = 12409.292131 eV Total energy + Delta-G solvation = -2389.695416 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.13026 -37.27035 -35.42643 -34.15710 -31.84887 -29.83127 -28.72723 -26.35325 -24.00634 -22.21376 -21.58345 -21.12874 -19.03865 -17.05684 -16.83159 -16.53043 -16.01703 -15.69030 -15.04523 -14.63610 -14.13267 -14.01966 -13.77423 -13.55604 -13.18900 -13.00643 -12.76783 -12.46737 -12.38265 -12.22435 -11.98528 -11.91418 -11.80747 -11.58505 -11.36642 -10.92597 -10.59749 -10.12768 -9.34214 -8.18888 -6.31744 1.40169 1.42990 1.54414 2.41471 2.96451 3.16441 3.89254 4.00247 4.10296 4.21083 4.31521 4.35433 4.45701 4.49762 4.58344 4.69282 4.79641 4.84281 4.95878 5.02668 5.05565 5.13968 5.23555 5.32226 5.36621 5.43524 5.52388 5.65701 5.78088 5.98996 6.18682 6.29808 6.73224 7.36275 7.44190 8.87399 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043635 B = 0.007250 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.528504 B = 3861.309410 C = 4116.871421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.106 4.106 4 C 0.043 3.957 5 N -0.512 5.512 6 C 0.043 3.957 7 C -0.114 4.114 8 C 0.229 3.771 9 O -0.603 6.603 10 C -0.541 4.541 11 H 0.051 0.949 12 C 0.025 3.975 13 N -0.916 5.916 14 Si 0.960 3.040 15 H -0.273 1.273 16 H -0.279 1.279 17 H -0.279 1.279 18 C 0.060 3.940 19 H 0.053 0.947 20 H 0.053 0.947 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.377 0.623 33 H 0.268 0.732 34 H 0.069 0.931 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.694 -9.458 0.227 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.144 4.144 4 C -0.085 4.085 5 N -0.237 5.237 6 C -0.085 4.085 7 C -0.153 4.153 8 C 0.190 3.810 9 O -0.411 6.411 10 C -0.580 4.580 11 H 0.069 0.931 12 C -0.175 4.175 13 N -0.557 5.557 14 Si 0.785 3.215 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.204 1.204 18 C -0.068 4.068 19 H 0.072 0.928 20 H 0.072 0.928 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.226 0.774 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -9.001 -9.661 -0.298 13.207 hybrid contribution 0.795 1.129 0.289 1.411 sum -8.206 -8.532 -0.008 11.837 Atomic orbital electron populations 1.21746 0.94952 1.02114 1.01860 1.21472 0.96579 0.95381 1.02272 1.21496 0.93091 0.97657 1.02134 1.22400 0.96936 0.88424 1.00757 1.65303 1.13281 1.17540 1.27590 1.23095 0.99805 0.95878 0.89711 1.22644 0.97314 0.97243 0.98075 1.19554 0.80337 0.91506 0.89614 1.86075 1.38548 1.39793 1.76690 1.21883 1.47340 0.94156 0.94587 0.93115 1.25684 0.93938 0.99947 0.97890 1.69786 1.47928 1.18745 1.19225 0.85487 0.77670 0.78712 0.79585 1.19748 1.20423 1.20431 1.22811 0.87973 0.96092 0.99909 0.92818 0.92795 0.91678 0.91597 0.91821 0.92440 0.92036 0.90796 0.94751 0.94043 0.89969 0.94045 0.93382 0.77382 0.92297 0.91294 0.94926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.91 71.98 0.71 -1.83 16 2 C -0.12 -2.34 5.93 30.59 0.18 -2.16 16 3 C -0.11 -2.70 5.33 30.60 0.16 -2.53 16 4 C 0.04 1.31 4.83 86.30 0.42 1.73 16 5 N -0.51 -20.24 5.34 -881.04 -4.70 -24.94 16 6 C 0.04 1.68 5.93 86.42 0.51 2.19 16 7 C -0.11 -5.49 5.55 31.49 0.17 -5.32 16 8 C 0.23 11.89 1.05 -10.65 -0.01 11.87 16 9 O -0.60 -32.66 12.94 -148.98 -1.93 -34.59 16 10 C -0.54 -30.29 8.10 25.60 0.21 -30.08 16 11 H 0.05 2.88 7.53 -2.91 -0.02 2.86 16 12 C 0.02 1.35 5.02 84.66 0.43 1.78 16 13 N -0.92 -50.36 10.81 21.45 0.23 -50.13 16 14 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 15 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 18 C 0.06 2.71 5.74 86.45 0.50 3.21 16 19 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 20 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 21 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.06 1.49 7.47 -2.39 -0.02 1.47 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 2.15 8.08 -2.39 -0.02 2.13 16 27 H 0.03 1.02 7.77 -2.39 -0.02 1.00 16 28 H 0.04 1.51 7.75 -2.38 -0.02 1.49 16 29 H 0.08 2.94 7.86 -2.39 -0.02 2.92 16 30 H 0.04 2.01 7.98 -2.39 -0.02 1.99 16 31 H 0.05 2.53 7.23 -2.39 -0.02 2.52 16 32 H 0.38 20.72 7.32 -74.06 -0.54 20.17 16 33 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 34 H 0.07 3.15 7.67 -2.39 -0.02 3.13 16 35 H 0.03 1.42 7.94 -2.39 -0.02 1.40 16 Total: -1.00 -58.50 279.11 -0.59 -59.09 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.50 Total: 26.09 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 3.28 Total: -21.14 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -4.47 Total: -75.06 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -1.93 Total: -34.59 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -58.50 -0.59 -59.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148370.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.404 kcal (2) G-P(sol) polarization free energy of solvation -58.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds