Wall clock time and date at job start Sun Mar 29 2020 22:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.46907 * 240.00235 * 3 2 1 5 5 H 1.48504 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47302 * 120.00188 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47224 * 325.00460 * 11 10 9 13 13 C 1.53002 * 109.47102 * 85.00132 * 11 10 9 14 14 C 1.52999 * 109.47355 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46962 * 300.00335 * 14 13 11 16 16 H 1.09000 * 109.46694 * 299.99984 * 15 14 13 17 17 C 1.52999 * 109.46962 * 179.97438 * 15 14 13 18 18 O 1.42896 * 109.47406 * 64.99761 * 17 15 14 19 19 C 1.53002 * 109.47359 * 59.99667 * 15 14 13 20 20 C 1.52996 * 109.46819 * 205.00022 * 11 10 9 21 21 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 23 23 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 24 24 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 25 25 H 1.08996 * 109.46950 * 299.99914 * 13 11 10 26 26 H 1.09003 * 109.46813 * 60.00077 * 13 11 10 27 27 H 1.08990 * 109.47368 * 180.02562 * 14 13 11 28 28 H 1.09001 * 109.46662 * 59.99921 * 14 13 11 29 29 H 1.09002 * 109.47155 * 185.00031 * 17 15 14 30 30 H 1.09000 * 109.46682 * 304.99505 * 17 15 14 31 31 H 0.96702 * 114.00170 * 180.02562 * 18 17 15 32 32 H 1.08996 * 109.46950 * 180.02562 * 19 15 14 33 33 H 1.09003 * 109.46813 * 59.99965 * 19 15 14 34 34 H 1.08991 * 109.47645 * 299.99749 * 20 11 10 35 35 H 1.08998 * 109.47460 * 60.00760 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 1 0.5916 -4.8253 0.5880 13 6 1.1519 -5.2951 -1.4384 14 6 0.4230 -6.6403 -1.4392 15 6 1.3293 -7.7118 -0.8297 16 1 2.2427 -7.7931 -1.4189 17 6 0.6002 -9.0568 -0.8298 18 8 0.3731 -9.4754 -2.1771 19 6 1.6825 -7.3238 0.6076 20 6 2.4109 -5.9788 0.6085 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5566 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 2.8403 -3.5488 -0.7819 25 1 0.5066 -4.5315 -1.8727 26 1 2.0654 -5.3769 -2.0275 27 1 0.1718 -6.9169 -2.4630 28 1 -0.4904 -6.5588 -0.8499 29 1 1.2094 -9.8005 -0.3161 30 1 -0.3553 -8.9521 -0.3159 31 1 -0.0867 -10.3227 -2.2535 32 1 2.3285 -8.0869 1.0416 33 1 0.7690 -7.2424 1.1968 34 1 3.3242 -6.0607 0.0194 35 1 2.6624 -5.7025 1.6324 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592430976.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:42 Heat of formation + Delta-G solvation = -81.490966 kcal Electronic energy + Delta-G solvation = -14412.799254 eV Core-core repulsion = 12023.233953 eV Total energy + Delta-G solvation = -2389.565301 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.94703 -36.69457 -34.40030 -32.39860 -30.47017 -29.73327 -26.40439 -24.19371 -22.42699 -21.58674 -20.43869 -19.62973 -17.38093 -16.42790 -15.35388 -14.95695 -14.63495 -14.20871 -13.84403 -13.66147 -13.17081 -12.78485 -12.43965 -12.03468 -11.77400 -11.66217 -11.31687 -10.87590 -10.79591 -10.74976 -10.66348 -10.35860 -10.17107 -10.06794 -9.82581 -9.64847 -9.11481 -8.44353 -7.18096 -5.99668 -4.01432 3.35930 3.39426 3.42819 4.12139 4.45830 4.76373 4.91861 5.05913 5.22014 5.34272 5.36163 5.44125 5.58144 5.64241 5.72133 5.77827 5.83809 5.95427 6.13752 6.27460 6.32371 6.38959 6.44816 6.53549 6.75862 6.79159 7.32945 7.49945 7.50264 7.83200 8.18346 8.46987 8.68715 9.08141 9.63282 11.11395 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.070557 B = 0.005427 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.749413 B = 5157.684586 C = 5335.160002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.687 5.687 11 C 0.087 3.913 12 H 0.068 0.932 13 C -0.148 4.148 14 C -0.104 4.104 15 C -0.086 4.086 16 H 0.074 0.926 17 C 0.079 3.921 18 O -0.573 6.573 19 C -0.111 4.111 20 C -0.103 4.103 21 H 0.261 0.739 22 H -0.013 1.013 23 H 0.026 0.974 24 H 0.328 0.672 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.375 0.625 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.863 -16.973 -1.199 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.315 5.315 11 C -0.025 4.025 12 H 0.087 0.913 13 C -0.187 4.187 14 C -0.142 4.142 15 C -0.105 4.105 16 H 0.093 0.907 17 C 0.002 3.998 18 O -0.378 6.378 19 C -0.149 4.149 20 C -0.142 4.142 21 H 0.071 0.929 22 H 0.005 0.995 23 H 0.044 0.956 24 H 0.144 0.856 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.221 0.779 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.097 -16.233 -0.617 16.282 hybrid contribution -0.301 0.376 -0.779 0.916 sum 0.796 -15.857 -1.396 15.938 Atomic orbital electron populations 1.69960 1.06082 1.26819 1.50976 1.24990 0.94867 0.99328 0.95389 0.86548 0.79421 0.82710 0.78631 1.20292 1.21363 1.20170 1.21182 0.93476 0.90379 1.50273 0.92081 1.19559 0.90649 0.87377 0.95636 1.60764 1.20851 1.01183 1.48724 1.21537 0.96463 0.90585 0.93865 0.91344 1.22299 1.00439 0.96798 0.99157 1.21450 0.97866 0.94154 1.00761 1.21177 0.99104 0.92882 0.97338 0.90708 1.22296 0.98620 0.96028 0.82893 1.86511 1.81446 1.42490 1.27312 1.21516 1.00579 0.97742 0.95073 1.21472 0.98247 0.92863 1.01579 0.92911 0.99542 0.95622 0.85559 0.91807 0.92377 0.91890 0.92419 0.93970 0.93751 0.77931 0.92232 0.91957 0.92392 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.88 9.32 -34.44 -0.32 -15.21 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.19 5.21 5.24 -4.98 -0.03 5.18 16 10 N -0.69 -15.07 6.24 -107.99 -0.67 -15.75 16 11 C 0.09 1.56 2.47 -67.71 -0.17 1.39 16 12 H 0.07 1.33 7.80 -51.93 -0.40 0.92 16 13 C -0.15 -2.45 5.17 -26.73 -0.14 -2.59 16 14 C -0.10 -1.48 5.10 -26.73 -0.14 -1.61 16 15 C -0.09 -1.07 2.43 -90.62 -0.22 -1.29 16 16 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 17 C 0.08 0.82 6.43 37.16 0.24 1.06 16 18 O -0.57 -6.17 13.19 -35.23 -0.46 -6.63 16 19 C -0.11 -1.35 5.20 -26.75 -0.14 -1.49 16 20 C -0.10 -1.54 5.53 -26.76 -0.15 -1.69 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H -0.01 -0.37 7.44 -51.93 -0.39 -0.76 16 23 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 24 H 0.33 6.95 8.46 -39.29 -0.33 6.62 16 25 H 0.06 1.19 7.45 -51.93 -0.39 0.80 16 26 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 27 H 0.06 0.91 7.82 -51.93 -0.41 0.50 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.37 2.20 9.12 45.56 0.42 2.62 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 281.45 15.07 4.24 4.24 Total: -1.00 -31.40 281.45 -7.60 -39.00 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.27 Total: 3.43 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -1.15 Total: -14.73 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.06 Total: -42.31 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.46 Total: -6.63 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.40 -7.60 -39.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592430976.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.489 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds