Wall clock time and date at job start Sun Mar 29 2020 22:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.46907 * 240.00235 * 3 2 1 5 5 H 1.48504 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47302 * 120.00188 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47224 * 325.00460 * 11 10 9 13 13 C 1.53002 * 109.47102 * 85.00132 * 11 10 9 14 14 C 1.52999 * 109.47355 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46962 * 300.00335 * 14 13 11 16 16 H 1.09000 * 109.46694 * 299.99984 * 15 14 13 17 17 C 1.52999 * 109.46962 * 179.97438 * 15 14 13 18 18 O 1.42896 * 109.47406 * 64.99761 * 17 15 14 19 19 C 1.53002 * 109.47359 * 59.99667 * 15 14 13 20 20 C 1.52996 * 109.46819 * 205.00022 * 11 10 9 21 21 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 23 23 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 24 24 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 25 25 H 1.08996 * 109.46950 * 299.99914 * 13 11 10 26 26 H 1.09003 * 109.46813 * 60.00077 * 13 11 10 27 27 H 1.08990 * 109.47368 * 180.02562 * 14 13 11 28 28 H 1.09001 * 109.46662 * 59.99921 * 14 13 11 29 29 H 1.09002 * 109.47155 * 185.00031 * 17 15 14 30 30 H 1.09000 * 109.46682 * 304.99505 * 17 15 14 31 31 H 0.96702 * 114.00170 * 180.02562 * 18 17 15 32 32 H 1.08996 * 109.46950 * 180.02562 * 19 15 14 33 33 H 1.09003 * 109.46813 * 59.99965 * 19 15 14 34 34 H 1.08991 * 109.47645 * 299.99749 * 20 11 10 35 35 H 1.08998 * 109.47460 * 60.00760 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 1 0.5916 -4.8253 0.5880 13 6 1.1519 -5.2951 -1.4384 14 6 0.4230 -6.6403 -1.4392 15 6 1.3293 -7.7118 -0.8297 16 1 2.2427 -7.7931 -1.4189 17 6 0.6002 -9.0568 -0.8298 18 8 0.3731 -9.4754 -2.1771 19 6 1.6825 -7.3238 0.6076 20 6 2.4109 -5.9788 0.6085 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5566 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 2.8403 -3.5488 -0.7819 25 1 0.5066 -4.5315 -1.8727 26 1 2.0654 -5.3769 -2.0275 27 1 0.1718 -6.9169 -2.4630 28 1 -0.4904 -6.5588 -0.8499 29 1 1.2094 -9.8005 -0.3161 30 1 -0.3553 -8.9521 -0.3159 31 1 -0.0867 -10.3227 -2.2535 32 1 2.3285 -8.0869 1.0416 33 1 0.7690 -7.2424 1.1968 34 1 3.3242 -6.0607 0.0194 35 1 2.6624 -5.7025 1.6324 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592430976.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:42 Heat of formation + Delta-G solvation = -105.178780 kcal Electronic energy + Delta-G solvation = -14413.826435 eV Core-core repulsion = 12023.233953 eV Total energy + Delta-G solvation = -2390.592482 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15320 -37.73327 -36.01786 -34.37694 -31.67095 -31.24916 -28.23701 -25.54845 -23.81197 -23.35951 -21.78762 -20.81373 -18.60053 -18.11914 -16.83851 -16.53210 -15.97059 -15.48875 -15.32400 -15.02549 -14.60852 -14.28318 -13.91541 -13.52401 -13.28918 -13.09559 -13.00928 -12.64074 -12.44315 -12.06528 -12.03016 -11.97486 -11.46962 -11.42614 -11.21613 -10.98314 -10.75006 -10.65361 -9.03812 -8.22977 -6.34787 1.40420 1.44488 1.52537 2.39763 3.09917 3.35537 3.54056 3.75598 3.91641 4.06152 4.22157 4.40002 4.47708 4.50661 4.58940 4.61901 4.69825 4.84386 4.90387 4.99185 5.11431 5.15351 5.18900 5.23987 5.27560 5.35559 5.52053 5.53657 5.63631 6.02788 6.47387 6.73881 6.90060 6.97574 7.36392 8.88482 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.070557 B = 0.005427 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.749413 B = 5157.684586 C = 5335.160002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.211 3.789 10 N -0.685 5.685 11 C 0.084 3.916 12 H 0.049 0.951 13 C -0.141 4.141 14 C -0.098 4.098 15 C -0.085 4.085 16 H 0.070 0.930 17 C 0.082 3.918 18 O -0.594 6.594 19 C -0.103 4.103 20 C -0.096 4.096 21 H 0.265 0.735 22 H -0.040 1.040 23 H -0.005 1.005 24 H 0.333 0.667 25 H 0.032 0.968 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.395 0.605 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.030 -18.058 -1.018 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.577 4.577 8 H 0.083 0.917 9 C 0.083 3.917 10 N -0.314 5.314 11 C -0.026 4.026 12 H 0.067 0.933 13 C -0.180 4.180 14 C -0.136 4.136 15 C -0.103 4.103 16 H 0.089 0.911 17 C 0.005 3.995 18 O -0.403 6.403 19 C -0.141 4.141 20 C -0.134 4.134 21 H 0.074 0.926 22 H -0.023 1.023 23 H 0.013 0.987 24 H 0.150 0.850 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.245 0.755 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.267 -17.363 -0.440 17.516 hybrid contribution -0.703 0.665 -0.855 1.292 sum 1.563 -16.698 -1.296 16.821 Atomic orbital electron populations 1.70098 1.07895 1.28078 1.51474 1.25989 0.95799 1.03489 0.94478 0.85353 0.78086 0.77454 0.79199 1.19088 1.20702 1.19210 1.21554 0.93828 0.91539 1.50770 0.91745 1.19176 0.90652 0.89011 0.92835 1.60693 1.20158 1.01585 1.48994 1.21661 0.96350 0.89779 0.94859 0.93296 1.22181 1.00402 0.97573 0.97841 1.21387 0.97993 0.93259 1.00960 1.21146 0.98655 0.93496 0.97031 0.91106 1.22235 0.99122 0.95110 0.83060 1.86451 1.81996 1.44224 1.27614 1.21465 1.00922 0.96496 0.95234 1.21400 0.97983 0.93180 1.00870 0.92608 1.02274 0.98693 0.85001 0.94865 0.91744 0.92078 0.92616 0.91687 0.93019 0.75510 0.89352 0.91675 0.91735 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.96 13.29 21.45 0.28 -57.68 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.98 45.15 29.54 68.60 2.03 47.17 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.54 -31.75 9.32 25.60 0.24 -31.51 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 9 C 0.21 11.82 5.24 85.56 0.45 12.26 16 10 N -0.69 -30.86 6.24 -495.57 -3.09 -33.95 16 11 C 0.08 3.08 2.47 44.91 0.11 3.19 16 12 H 0.05 1.98 7.80 -2.39 -0.02 1.96 16 13 C -0.14 -4.77 5.17 30.59 0.16 -4.61 16 14 C -0.10 -2.72 5.10 30.60 0.16 -2.56 16 15 C -0.08 -1.91 2.43 -10.79 -0.03 -1.93 16 16 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 17 C 0.08 1.44 6.43 71.98 0.46 1.90 16 18 O -0.59 -11.29 13.19 -148.98 -1.97 -13.25 16 19 C -0.10 -2.24 5.20 30.58 0.16 -2.08 16 20 C -0.10 -2.75 5.53 30.58 0.17 -2.58 16 21 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 22 H -0.04 -2.43 7.44 -2.39 -0.02 -2.45 16 23 H -0.01 -0.31 8.05 -2.39 -0.02 -0.33 16 24 H 0.33 14.34 8.46 -89.69 -0.76 13.58 16 25 H 0.03 1.30 7.45 -2.39 -0.02 1.28 16 26 H 0.06 2.08 8.13 -2.39 -0.02 2.06 16 27 H 0.06 1.73 7.82 -2.39 -0.02 1.71 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.40 3.59 9.12 -74.06 -0.68 2.91 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -68.29 281.45 -0.78 -69.07 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -0.37 Total: 16.06 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 2.34 Total: -27.43 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -2.81 Total: -91.63 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -1.97 Total: -13.25 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -68.29 -0.78 -69.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592430976.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.112 kcal (2) G-P(sol) polarization free energy of solvation -68.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds