Wall clock time and date at job start Sun Mar 29 2020 21:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47034 * 2 1 4 4 O 1.42900 * 109.47095 * 239.99599 * 2 1 3 5 5 C 1.53003 * 109.47214 * 119.99805 * 2 1 3 6 6 N 1.46501 * 109.47042 * 185.00175 * 5 2 1 7 7 C 1.34772 * 120.00173 * 90.00043 * 6 5 2 8 8 O 1.21688 * 119.99965 * 177.02634 * 7 6 5 9 9 C 1.46374 * 119.99863 * 357.02279 * 7 6 5 10 10 H 1.07999 * 120.00152 * 327.94076 * 9 7 6 11 11 C 1.40056 * 119.99647 * 147.93982 * 9 7 6 12 12 N 1.30671 * 120.00400 * 350.20264 * 11 9 7 13 13 Si 1.86806 * 119.99829 * 169.93119 * 11 9 7 14 14 H 1.48499 * 109.46946 * 270.27509 * 13 11 9 15 15 H 1.48498 * 109.47282 * 30.27372 * 13 11 9 16 16 H 1.48501 * 109.47288 * 150.27556 * 13 11 9 17 17 C 1.46503 * 119.99804 * 269.99700 * 6 5 2 18 18 C 1.53001 * 117.49881 * 197.13821 * 17 6 5 19 19 C 1.52998 * 60.00235 * 252.51384 * 18 17 6 20 20 H 1.08996 * 109.46754 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47129 * 300.00157 * 1 2 3 22 22 H 1.08992 * 109.46985 * 60.00328 * 1 2 3 23 23 H 0.96700 * 113.99391 * 60.00381 * 4 2 1 24 24 H 1.08998 * 109.46719 * 64.99897 * 5 2 1 25 25 H 1.08997 * 109.46814 * 304.99779 * 5 2 1 26 26 H 0.97003 * 119.99578 * 352.95323 * 12 11 9 27 27 H 1.09003 * 115.55163 * 342.85727 * 17 6 5 28 28 H 1.09000 * 117.49661 * 0.02562 * 18 17 6 29 29 H 1.09004 * 117.49373 * 145.01785 * 18 17 6 30 30 H 1.08996 * 117.50132 * 252.50923 * 19 18 17 31 31 H 1.08998 * 117.51813 * 107.47929 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0401 -0.7212 1.2493 6 7 3.5001 -0.6178 1.3110 7 6 4.0758 0.4198 1.9500 8 8 5.2873 0.4775 2.0481 9 6 3.2437 1.4773 2.5261 10 1 2.3083 1.7443 2.0569 11 6 3.6606 2.1428 3.6858 12 7 4.6872 1.6983 4.3610 13 14 2.7536 3.6705 4.2631 14 1 3.3663 4.8733 3.6443 15 1 1.3266 3.5801 3.8622 16 1 2.8469 3.7724 5.7417 17 6 4.3344 -1.6423 0.6780 18 6 5.8033 -1.7169 1.0997 19 6 5.4302 -1.1688 -0.2791 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 1.7210 -0.2702 -1.9979 24 1 1.7517 -1.7714 1.2056 25 1 1.6055 -0.2616 2.1369 26 1 5.0972 0.8529 4.1196 27 1 3.8300 -2.5792 0.4415 28 1 6.1487 -1.0040 1.8484 29 1 6.2654 -2.7033 1.1411 30 1 5.6470 -1.7944 -1.1450 31 1 5.5301 -0.0951 -0.4381 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594414427.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:28 Heat of formation + Delta-G solvation = -63.780540 kcal Electronic energy + Delta-G solvation = -14973.763312 eV Core-core repulsion = 12449.132898 eV Total energy + Delta-G solvation = -2524.630414 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.86351 -36.93742 -35.11497 -33.19318 -32.34651 -30.36784 -25.96630 -25.37438 -21.98701 -21.46839 -20.99641 -19.18975 -17.02639 -16.95118 -15.71574 -14.86555 -14.36008 -13.86375 -13.73817 -13.57035 -12.98186 -12.72704 -12.31952 -11.94760 -11.55197 -11.48713 -11.18868 -10.95721 -10.73966 -10.41935 -10.26996 -10.01119 -9.86281 -9.58454 -9.44249 -8.80908 -7.53339 -7.16307 -6.69786 -4.68034 3.26815 3.28743 3.45906 4.11654 4.32900 4.41130 4.63420 4.89547 5.27688 5.42806 5.52552 5.58629 5.74241 5.80956 5.89981 5.98678 6.12834 6.21531 6.31185 6.43359 6.46017 6.54761 6.90045 7.35754 7.48152 7.91274 8.00009 8.14044 8.38344 8.88272 9.37849 10.29840 10.59102 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.025174 B = 0.013370 C = 0.009339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.980385 B = 2093.802471 C = 2997.518473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.080 3.920 3 H 0.061 0.939 4 O -0.560 6.560 5 C 0.142 3.858 6 N -0.603 5.603 7 C 0.566 3.434 8 O -0.601 6.601 9 C -0.617 4.617 10 H 0.069 0.931 11 C 0.050 3.950 12 N -0.822 5.822 13 Si 1.077 2.923 14 H -0.280 1.280 15 H -0.282 1.282 16 H -0.279 1.279 17 C 0.098 3.902 18 C -0.210 4.210 19 C -0.190 4.190 20 H 0.058 0.942 21 H 0.067 0.933 22 H 0.052 0.948 23 H 0.365 0.635 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.300 0.700 27 H 0.103 0.897 28 H 0.151 0.849 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.123 -3.290 -6.431 10.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.020 3.980 3 H 0.079 0.921 4 O -0.364 6.364 5 C 0.017 3.983 6 N -0.334 5.334 7 C 0.374 3.626 8 O -0.489 6.489 9 C -0.654 4.654 10 H 0.087 0.913 11 C -0.170 4.170 12 N -0.452 5.452 13 Si 0.902 3.098 14 H -0.206 1.206 15 H -0.207 1.207 16 H -0.205 1.205 17 C -0.008 4.008 18 C -0.247 4.247 19 C -0.230 4.230 20 H 0.078 0.922 21 H 0.086 0.914 22 H 0.072 0.928 23 H 0.210 0.790 24 H 0.077 0.923 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.121 0.879 28 H 0.168 0.832 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.182 -2.491 -4.778 8.978 hybrid contribution -0.488 -0.943 -1.885 2.164 sum -7.670 -3.435 -6.663 10.724 Atomic orbital electron populations 1.22454 0.97041 1.02169 1.02281 1.22478 0.91777 0.96894 0.86899 0.92078 1.86591 1.77293 1.57104 1.15444 1.21218 0.82101 0.99215 0.95769 1.47368 1.04189 1.24555 1.57279 1.18504 0.87453 0.80650 0.76015 1.90266 1.15652 1.79381 1.63634 1.21851 1.09141 1.19842 1.14548 0.91313 1.26573 0.95400 1.02032 0.93004 1.70133 1.16175 1.20532 1.38388 0.83487 0.75201 0.74431 0.76642 1.20560 1.20711 1.20462 1.21173 0.87168 0.92313 1.00156 1.24197 0.97678 1.02177 1.00679 1.23007 1.05999 1.01056 0.92901 0.92248 0.91361 0.92848 0.79001 0.92272 0.88442 0.88532 0.87933 0.83202 0.91475 0.90558 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 9.54 37.16 0.35 -1.97 16 2 C 0.08 1.33 3.68 -26.73 -0.10 1.24 16 3 H 0.06 1.17 7.52 -51.93 -0.39 0.77 16 4 O -0.56 -9.10 12.88 -35.23 -0.45 -9.55 16 5 C 0.14 2.73 4.77 -4.04 -0.02 2.71 16 6 N -0.60 -14.03 2.80 -167.75 -0.47 -14.50 16 7 C 0.57 15.70 6.79 -12.99 -0.09 15.61 16 8 O -0.60 -18.26 10.85 5.20 0.06 -18.20 16 9 C -0.62 -16.92 8.01 -35.63 -0.29 -17.21 16 10 H 0.07 1.75 6.45 -52.49 -0.34 1.41 16 11 C 0.05 1.39 5.43 -17.36 -0.09 1.29 16 12 N -0.82 -24.65 13.32 55.55 0.74 -23.91 16 13 Si 1.08 23.25 29.95 -169.99 -5.09 18.16 16 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 15 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 16 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 17 C 0.10 2.10 6.22 -67.93 -0.42 1.68 16 18 C -0.21 -4.61 9.64 -26.73 -0.26 -4.87 16 19 C -0.19 -4.02 9.90 -26.73 -0.26 -4.28 16 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.36 4.30 9.08 45.56 0.41 4.71 16 24 H 0.06 1.03 8.03 -51.93 -0.42 0.61 16 25 H 0.10 1.92 6.77 -51.93 -0.35 1.57 16 26 H 0.30 9.45 6.46 -40.82 -0.26 9.19 16 27 H 0.10 1.96 8.09 -51.93 -0.42 1.54 16 28 H 0.15 3.92 4.97 -53.32 -0.27 3.66 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.09 2.09 7.80 -51.93 -0.40 1.68 16 LS Contribution 260.98 15.07 3.93 3.93 Total: -1.00 -32.44 260.98 -5.81 -38.25 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -3.35 Total: 11.62 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.18 Total: -5.80 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.27 Total: -38.41 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.40 Total: -27.75 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.09 Total: 18.16 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.44 -5.81 -38.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594414427.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.529 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds