Wall clock time and date at job start Sun Mar 29 2020 21:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47034 * 2 1 4 4 O 1.42900 * 109.47095 * 239.99599 * 2 1 3 5 5 C 1.53003 * 109.47214 * 119.99805 * 2 1 3 6 6 N 1.46501 * 109.47042 * 185.00175 * 5 2 1 7 7 C 1.34772 * 120.00173 * 90.00043 * 6 5 2 8 8 O 1.21688 * 119.99965 * 177.02634 * 7 6 5 9 9 C 1.46374 * 119.99863 * 357.02279 * 7 6 5 10 10 H 1.07999 * 120.00152 * 327.94076 * 9 7 6 11 11 C 1.40056 * 119.99647 * 147.93982 * 9 7 6 12 12 N 1.30671 * 120.00400 * 350.20264 * 11 9 7 13 13 Si 1.86806 * 119.99829 * 169.93119 * 11 9 7 14 14 H 1.48499 * 109.46946 * 270.27509 * 13 11 9 15 15 H 1.48498 * 109.47282 * 30.27372 * 13 11 9 16 16 H 1.48501 * 109.47288 * 150.27556 * 13 11 9 17 17 C 1.46503 * 119.99804 * 269.99700 * 6 5 2 18 18 C 1.53001 * 117.49881 * 197.13821 * 17 6 5 19 19 C 1.52998 * 60.00235 * 252.51384 * 18 17 6 20 20 H 1.08996 * 109.46754 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47129 * 300.00157 * 1 2 3 22 22 H 1.08992 * 109.46985 * 60.00328 * 1 2 3 23 23 H 0.96700 * 113.99391 * 60.00381 * 4 2 1 24 24 H 1.08998 * 109.46719 * 64.99897 * 5 2 1 25 25 H 1.08997 * 109.46814 * 304.99779 * 5 2 1 26 26 H 0.97003 * 119.99578 * 352.95323 * 12 11 9 27 27 H 1.09003 * 115.55163 * 342.85727 * 17 6 5 28 28 H 1.09000 * 117.49661 * 0.02562 * 18 17 6 29 29 H 1.09004 * 117.49373 * 145.01785 * 18 17 6 30 30 H 1.08996 * 117.50132 * 252.50923 * 19 18 17 31 31 H 1.08998 * 117.51813 * 107.47929 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0401 -0.7212 1.2493 6 7 3.5001 -0.6178 1.3110 7 6 4.0758 0.4198 1.9500 8 8 5.2873 0.4775 2.0481 9 6 3.2437 1.4773 2.5261 10 1 2.3083 1.7443 2.0569 11 6 3.6606 2.1428 3.6858 12 7 4.6872 1.6983 4.3610 13 14 2.7536 3.6705 4.2631 14 1 3.3663 4.8733 3.6443 15 1 1.3266 3.5801 3.8622 16 1 2.8469 3.7724 5.7417 17 6 4.3344 -1.6423 0.6780 18 6 5.8033 -1.7169 1.0997 19 6 5.4302 -1.1688 -0.2791 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 1.7210 -0.2702 -1.9979 24 1 1.7517 -1.7714 1.2056 25 1 1.6055 -0.2616 2.1369 26 1 5.0972 0.8529 4.1196 27 1 3.8300 -2.5792 0.4415 28 1 6.1487 -1.0040 1.8484 29 1 6.2654 -2.7033 1.1411 30 1 5.6470 -1.7944 -1.1450 31 1 5.5301 -0.0951 -0.4381 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594414427.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:28 Heat of formation + Delta-G solvation = -88.161532 kcal Electronic energy + Delta-G solvation = -14974.820552 eV Core-core repulsion = 12449.132898 eV Total energy + Delta-G solvation = -2525.687653 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.72995 -38.34479 -37.03215 -34.90738 -34.43363 -31.70166 -28.04085 -26.85816 -23.87956 -23.20840 -22.35630 -21.15078 -18.94580 -18.29299 -17.50795 -16.65466 -15.98964 -15.61135 -15.28568 -15.13487 -14.83209 -14.55902 -13.73688 -13.34682 -13.26870 -12.95395 -12.81751 -12.68268 -12.35003 -12.13994 -11.90506 -11.78762 -11.61096 -11.15437 -10.87345 -10.85226 -9.64578 -9.06737 -8.83070 -6.87392 1.53011 1.56356 1.81057 2.30080 2.37981 2.63451 3.09394 3.33940 3.52289 4.04227 4.06613 4.11704 4.23082 4.25472 4.34390 4.60406 4.76384 4.77915 4.88893 5.01839 5.08536 5.14302 5.30139 5.50042 5.56555 5.79451 6.09729 6.32098 6.81843 6.95016 7.34179 8.19999 8.36135 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.025174 B = 0.013370 C = 0.009339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.980385 B = 2093.802471 C = 2997.518473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.088 3.912 3 H 0.031 0.969 4 O -0.573 6.573 5 C 0.132 3.868 6 N -0.605 5.605 7 C 0.549 3.451 8 O -0.639 6.639 9 C -0.632 4.632 10 H 0.085 0.915 11 C 0.002 3.998 12 N -0.856 5.856 13 Si 1.131 2.869 14 H -0.273 1.273 15 H -0.247 1.247 16 H -0.276 1.276 17 C 0.093 3.907 18 C -0.220 4.220 19 C -0.178 4.178 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.385 0.615 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.276 0.724 27 H 0.138 0.862 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.449 -3.729 -7.678 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.028 3.972 3 H 0.049 0.951 4 O -0.380 6.380 5 C 0.009 3.991 6 N -0.335 5.335 7 C 0.356 3.644 8 O -0.530 6.530 9 C -0.668 4.668 10 H 0.103 0.897 11 C -0.211 4.211 12 N -0.486 5.486 13 Si 0.947 3.053 14 H -0.199 1.199 15 H -0.170 1.170 16 H -0.201 1.201 17 C -0.012 4.012 18 C -0.257 4.257 19 C -0.217 4.217 20 H 0.091 0.909 21 H 0.088 0.912 22 H 0.094 0.906 23 H 0.234 0.766 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.155 0.845 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.133 0.867 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.551 -2.964 -6.075 11.701 hybrid contribution 0.266 -0.897 -1.599 1.853 sum -9.285 -3.861 -7.674 12.649 Atomic orbital electron populations 1.22340 0.93506 1.03432 1.03497 1.22202 0.94289 0.94548 0.86137 0.95131 1.86519 1.77886 1.57296 1.16297 1.21493 0.79564 1.01052 0.96981 1.47322 1.06194 1.23679 1.56281 1.18831 0.87176 0.81898 0.76488 1.90287 1.17201 1.80466 1.65000 1.22220 1.09740 1.20242 1.14635 0.89654 1.28398 0.94975 1.04720 0.92980 1.70291 1.18319 1.20180 1.39804 0.82882 0.75751 0.70292 0.76356 1.19883 1.17004 1.20117 1.21530 0.86968 0.92961 0.99765 1.23972 0.98774 1.02832 1.00154 1.22937 1.05540 0.99462 0.93778 0.90919 0.91208 0.90640 0.76626 0.89860 0.89428 0.91132 0.84502 0.87755 0.88008 0.86669 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.77 9.54 71.98 0.69 -3.09 16 2 C 0.09 2.78 3.68 30.60 0.11 2.89 16 3 H 0.03 1.14 7.52 -2.39 -0.02 1.13 16 4 O -0.57 -17.01 12.88 -148.98 -1.92 -18.93 16 5 C 0.13 4.90 4.77 86.38 0.41 5.31 16 6 N -0.60 -28.10 2.80 -802.87 -2.25 -30.35 16 7 C 0.55 31.37 6.79 86.36 0.59 31.96 16 8 O -0.64 -40.78 10.85 -4.31 -0.05 -40.82 16 9 C -0.63 -35.16 8.01 24.83 0.20 -34.96 16 10 H 0.09 4.32 6.45 -2.91 -0.02 4.30 16 11 C 0.00 0.09 5.43 85.31 0.46 0.55 16 12 N -0.86 -53.20 13.32 21.84 0.29 -52.91 16 13 Si 1.13 46.21 29.95 68.60 2.05 48.26 16 14 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 15 H -0.25 -8.63 7.11 99.48 0.71 -7.92 16 16 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 17 C 0.09 3.87 6.22 44.99 0.28 4.15 16 18 C -0.22 -9.64 9.64 30.59 0.29 -9.34 16 19 C -0.18 -7.36 9.90 30.60 0.30 -7.06 16 20 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 23 H 0.39 7.91 9.08 -74.06 -0.67 7.24 16 24 H 0.08 2.66 8.03 -2.39 -0.02 2.64 16 25 H 0.09 3.38 6.77 -2.39 -0.02 3.37 16 26 H 0.28 18.39 6.46 -92.71 -0.60 17.79 16 27 H 0.14 4.76 8.09 -2.39 -0.02 4.74 16 28 H 0.10 5.72 4.97 -24.36 -0.12 5.60 16 29 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 30 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 31 H 0.05 2.45 7.80 -2.39 -0.02 2.43 16 Total: -1.00 -73.73 260.98 1.99 -71.74 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 0.52 Total: 32.60 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 3.34 Total: -9.58 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -1.96 Total: -83.26 kcal Atomic # 8 Polarization: -57.79 SS G_CDS: -1.97 Total: -59.76 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.05 Total: 48.26 kcal Total: -73.73 1.99 -71.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594414427.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.418 kcal (2) G-P(sol) polarization free energy of solvation -73.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds