Wall clock time and date at job start Sun Mar 29 2020 22:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00137 * 2 1 4 4 O 1.20833 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00432 * 179.71953 * 3 2 1 6 6 H 1.09009 * 112.84398 * 49.07982 * 5 3 2 7 7 C 1.53780 * 113.61720 * 180.27478 * 5 3 2 8 8 C 1.53785 * 87.07938 * 139.98539 * 7 5 3 9 9 H 1.08997 * 113.61417 * 219.93424 * 8 7 5 10 10 N 1.46898 * 113.61426 * 89.11563 * 8 7 5 11 11 C 1.46900 * 110.99764 * 154.99726 * 10 8 7 12 12 C 1.50704 * 109.47028 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00004 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00197 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99915 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00136 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47345 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47012 * 120.00604 * 16 14 12 19 19 H 1.48504 * 109.47084 * 240.00465 * 16 14 12 20 20 C 1.53779 * 113.61675 * 277.77760 * 5 3 2 21 21 H 1.08997 * 109.47380 * 299.99656 * 1 2 3 22 22 H 1.08997 * 109.47403 * 60.00337 * 1 2 3 23 23 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 24 24 H 1.09000 * 113.61488 * 254.52849 * 7 5 3 25 25 H 1.09002 * 113.61062 * 25.43907 * 7 5 3 26 26 H 1.00910 * 110.99880 * 31.05059 * 10 8 7 27 27 H 1.09003 * 109.47724 * 300.00110 * 11 10 8 28 28 H 1.08998 * 109.46866 * 60.00557 * 11 10 8 29 29 H 0.96993 * 120.00020 * 179.97438 * 15 14 12 30 30 H 1.08997 * 113.61504 * 334.56326 * 20 5 3 31 31 H 1.09004 * 113.61475 * 105.46661 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0064 6 1 4.0267 0.6382 -0.7493 7 6 4.1077 2.7142 0.0123 8 6 5.1770 2.2242 1.0030 9 1 5.3899 2.9342 1.8021 10 7 6.3922 1.7156 0.3531 11 6 7.5517 1.8210 1.2489 12 6 8.7767 1.2903 0.5496 13 1 8.7015 0.9130 -0.4595 14 6 9.9937 1.2876 1.1978 15 7 10.0854 1.7476 2.4264 16 14 11.5121 0.6305 0.3307 17 1 11.1449 0.1758 -1.0344 18 1 12.5323 1.7055 0.2362 19 1 12.0666 -0.5117 1.1009 20 6 4.1854 1.1198 1.4055 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 4.5147 3.0316 -0.9478 25 1 3.4154 3.4393 0.4404 26 1 6.5639 2.1946 -0.5183 27 1 7.7099 2.8656 1.5172 28 1 7.3678 1.2379 2.1513 29 1 10.9414 1.7453 2.8825 30 1 3.5144 1.4090 2.2143 31 1 4.6551 0.1501 1.5701 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596066950.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:51 Heat of formation + Delta-G solvation = -70.244385 kcal Electronic energy + Delta-G solvation = -13890.011906 eV Core-core repulsion = 11365.101199 eV Total energy + Delta-G solvation = -2524.910707 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.67059 -38.43851 -36.30386 -33.83775 -31.77926 -28.42172 -26.66685 -25.49525 -24.87500 -21.77077 -20.99456 -18.73442 -17.72812 -16.78149 -16.35662 -16.26770 -14.89405 -14.69962 -14.27320 -13.92782 -13.40071 -12.96741 -12.41908 -12.25544 -12.14169 -11.58920 -11.55923 -11.37547 -10.87400 -10.84427 -10.63554 -10.39848 -10.21728 -10.09822 -9.81233 -9.14910 -8.50682 -7.37736 -6.04935 -4.07069 2.24649 2.77670 3.30495 3.37899 3.42732 4.41128 4.61614 4.74653 4.85378 4.99377 5.05629 5.08629 5.20562 5.31599 5.41658 5.55418 5.86843 5.93909 6.12102 6.30635 6.39196 6.41297 6.47980 7.24256 7.39057 7.76882 7.79937 8.10603 8.33785 8.56689 9.02401 9.58132 11.06251 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.070288 B = 0.005201 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.263836 B = 5382.660828 C = 5499.889308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.471 3.529 4 O -0.515 6.515 5 C -0.100 4.100 6 H 0.129 0.871 7 C -0.125 4.125 8 C 0.066 3.934 9 H 0.059 0.941 10 N -0.672 5.672 11 C 0.194 3.806 12 C -0.515 4.515 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.112 4.112 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.098 0.902 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.333 0.667 27 H -0.011 1.011 28 H 0.029 0.971 29 H 0.261 0.739 30 H 0.077 0.923 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.996 -1.734 -3.938 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.314 3.686 4 O -0.403 6.403 5 C -0.119 4.119 6 H 0.147 0.853 7 C -0.163 4.163 8 C -0.045 4.045 9 H 0.077 0.923 10 N -0.304 5.304 11 C 0.067 3.933 12 C -0.554 4.554 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.151 4.151 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.117 0.883 24 H 0.095 0.905 25 H 0.111 0.889 26 H 0.151 0.849 27 H 0.006 0.994 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.214 -2.071 -3.628 15.777 hybrid contribution 0.752 0.616 -0.357 1.035 sum -14.462 -1.455 -3.985 15.071 Atomic orbital electron populations 1.23225 0.77101 1.03429 1.02280 1.86573 1.22870 1.33945 1.83996 1.24118 0.92279 0.80942 0.71212 1.90621 1.67259 1.36533 1.45924 1.22560 0.85239 1.01328 1.02798 0.85271 1.23274 0.98101 0.94067 1.00900 1.22494 0.90879 0.94714 0.96432 0.92275 1.60562 1.03128 1.59172 1.07491 1.19631 0.86199 0.95127 0.92342 1.21220 0.92249 1.40969 1.00924 0.91854 1.24990 0.99138 0.95491 0.94943 1.69971 1.25328 1.46706 1.11688 0.86426 0.82617 0.78531 0.79737 1.19640 1.21111 1.20991 1.22965 0.97216 1.02143 0.92763 0.92107 0.92145 0.88310 0.90510 0.88903 0.84859 0.99361 0.95244 0.92939 0.90431 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.67 10.56 -39.24 -0.41 -5.08 16 3 C 0.47 6.80 7.48 36.00 0.27 7.07 16 4 O -0.52 -8.44 15.65 -18.76 -0.29 -8.73 16 5 C -0.10 -1.42 4.17 -90.96 -0.38 -1.80 16 6 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 7 C -0.13 -1.81 7.08 -25.92 -0.18 -2.00 16 8 C 0.07 1.13 4.22 -66.90 -0.28 0.85 16 9 H 0.06 1.07 7.87 -51.93 -0.41 0.66 16 10 N -0.67 -13.74 6.44 -107.13 -0.69 -14.43 16 11 C 0.19 4.96 5.28 -4.97 -0.03 4.93 16 12 C -0.51 -14.35 9.32 -34.44 -0.32 -14.67 16 13 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 16 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C -0.11 -1.71 7.43 -25.92 -0.19 -1.90 16 21 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 22 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 23 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 1.04 7.91 -51.93 -0.41 0.63 16 25 H 0.09 1.33 7.43 -51.93 -0.39 0.95 16 26 H 0.33 6.46 8.38 -39.29 -0.33 6.14 16 27 H -0.01 -0.31 8.13 -51.93 -0.42 -0.73 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 270.57 15.07 4.08 4.08 Total: -1.00 -30.83 270.57 -6.21 -37.04 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.46 Total: 1.22 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -0.15 Total: -4.66 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.05 Total: -40.30 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.71 Total: -13.81 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.83 -6.21 -37.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596066950.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.207 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds