Wall clock time and date at job start Sun Mar 29 2020 22:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00137 * 2 1 4 4 O 1.20833 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00432 * 179.71953 * 3 2 1 6 6 H 1.09009 * 112.84398 * 49.07982 * 5 3 2 7 7 C 1.53780 * 113.61720 * 180.27478 * 5 3 2 8 8 C 1.53785 * 87.07938 * 139.98539 * 7 5 3 9 9 H 1.08997 * 113.61417 * 219.93424 * 8 7 5 10 10 N 1.46898 * 113.61426 * 89.11563 * 8 7 5 11 11 C 1.46900 * 110.99764 * 154.99726 * 10 8 7 12 12 C 1.50704 * 109.47028 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00004 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00197 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99915 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00136 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47345 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47012 * 120.00604 * 16 14 12 19 19 H 1.48504 * 109.47084 * 240.00465 * 16 14 12 20 20 C 1.53779 * 113.61675 * 277.77760 * 5 3 2 21 21 H 1.08997 * 109.47380 * 299.99656 * 1 2 3 22 22 H 1.08997 * 109.47403 * 60.00337 * 1 2 3 23 23 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 24 24 H 1.09000 * 113.61488 * 254.52849 * 7 5 3 25 25 H 1.09002 * 113.61062 * 25.43907 * 7 5 3 26 26 H 1.00910 * 110.99880 * 31.05059 * 10 8 7 27 27 H 1.09003 * 109.47724 * 300.00110 * 11 10 8 28 28 H 1.08998 * 109.46866 * 60.00557 * 11 10 8 29 29 H 0.96993 * 120.00020 * 179.97438 * 15 14 12 30 30 H 1.08997 * 113.61504 * 334.56326 * 20 5 3 31 31 H 1.09004 * 113.61475 * 105.46661 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0064 6 1 4.0267 0.6382 -0.7493 7 6 4.1077 2.7142 0.0123 8 6 5.1770 2.2242 1.0030 9 1 5.3899 2.9342 1.8021 10 7 6.3922 1.7156 0.3531 11 6 7.5517 1.8210 1.2489 12 6 8.7767 1.2903 0.5496 13 1 8.7015 0.9130 -0.4595 14 6 9.9937 1.2876 1.1978 15 7 10.0854 1.7476 2.4264 16 14 11.5121 0.6305 0.3307 17 1 11.1449 0.1758 -1.0344 18 1 12.5323 1.7055 0.2362 19 1 12.0666 -0.5117 1.1009 20 6 4.1854 1.1198 1.4055 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 4.5147 3.0316 -0.9478 25 1 3.4154 3.4393 0.4404 26 1 6.5639 2.1946 -0.5183 27 1 7.7099 2.8656 1.5172 28 1 7.3678 1.2379 2.1513 29 1 10.9414 1.7453 2.8825 30 1 3.5144 1.4090 2.2143 31 1 4.6551 0.1501 1.5701 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596066950.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:51 Heat of formation + Delta-G solvation = -90.906542 kcal Electronic energy + Delta-G solvation = -13890.907885 eV Core-core repulsion = 11365.101199 eV Total energy + Delta-G solvation = -2525.806686 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.80851 -39.69993 -37.42784 -35.74548 -33.70685 -29.52881 -28.34100 -26.72785 -26.25445 -23.73671 -22.20169 -20.08269 -18.87062 -18.39317 -17.85848 -17.34895 -16.65627 -16.28483 -15.63202 -15.36242 -14.63267 -14.35822 -14.12219 -13.52734 -13.39587 -13.24901 -12.95249 -12.80793 -12.66980 -12.36571 -11.95092 -11.80649 -11.72765 -11.48307 -11.33857 -11.05875 -10.64464 -9.12322 -8.20490 -6.31268 1.11762 1.43966 1.44640 1.58362 1.79307 2.42280 3.13642 3.34065 3.46967 3.59641 3.83808 4.01100 4.25331 4.31936 4.34263 4.60885 4.70346 4.72181 4.83695 5.03766 5.08449 5.09140 5.26534 5.33622 5.36290 5.66250 6.05462 6.45265 6.71596 6.74869 6.92088 7.39944 8.91458 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.070288 B = 0.005201 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.263836 B = 5382.660828 C = 5499.889308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.477 3.523 4 O -0.536 6.536 5 C -0.092 4.092 6 H 0.136 0.864 7 C -0.111 4.111 8 C 0.052 3.948 9 H 0.046 0.954 10 N -0.666 5.666 11 C 0.209 3.791 12 C -0.534 4.534 13 H 0.067 0.933 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.973 3.027 17 H -0.261 1.261 18 H -0.279 1.279 19 H -0.280 1.280 20 C -0.107 4.107 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.130 0.870 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.340 0.660 27 H -0.038 1.038 28 H 0.001 0.999 29 H 0.264 0.736 30 H 0.091 0.909 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.519 -2.491 -5.170 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.321 3.679 4 O -0.426 6.426 5 C -0.111 4.111 6 H 0.154 0.846 7 C -0.149 4.149 8 C -0.059 4.059 9 H 0.064 0.936 10 N -0.297 5.297 11 C 0.081 3.919 12 C -0.572 4.572 13 H 0.086 0.914 14 C -0.197 4.197 15 N -0.576 5.576 16 Si 0.797 3.203 17 H -0.185 1.185 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.145 4.145 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.148 0.852 24 H 0.107 0.893 25 H 0.116 0.884 26 H 0.159 0.841 27 H -0.020 1.020 28 H 0.019 0.981 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.767 -2.839 -4.873 16.745 hybrid contribution 0.811 0.841 0.057 1.170 sum -14.955 -1.998 -4.816 15.838 Atomic orbital electron populations 1.23561 0.74967 1.05674 1.02528 1.86550 1.24966 1.32996 1.83465 1.23970 0.92143 0.81059 0.70685 1.90616 1.67695 1.37275 1.47060 1.22460 0.85588 1.01047 1.02023 0.84611 1.23159 0.96689 0.94486 1.00525 1.22576 0.90367 0.95796 0.97128 0.93555 1.60422 1.02465 1.59823 1.07007 1.19258 0.87813 0.92764 0.92089 1.21595 0.93291 1.41047 1.01253 0.91442 1.25944 1.02608 0.95568 0.95603 1.70098 1.26362 1.47794 1.13316 0.85281 0.78260 0.77864 0.78854 1.18490 1.20497 1.20550 1.22912 0.96740 1.00750 0.94127 0.92004 0.91803 0.85159 0.89285 0.88420 0.84074 1.01998 0.98054 0.92678 0.89074 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.36 -8.74 10.56 -51.34 -0.54 -9.28 16 3 C 0.48 12.91 7.48 71.23 0.53 13.44 16 4 O -0.54 -16.66 15.65 21.94 0.34 -16.32 16 5 C -0.09 -2.47 4.17 -11.02 -0.05 -2.51 16 6 H 0.14 3.48 8.14 -2.38 -0.02 3.46 16 7 C -0.11 -3.04 7.08 31.12 0.22 -2.82 16 8 C 0.05 1.77 4.22 45.44 0.19 1.97 16 9 H 0.05 1.71 7.87 -2.39 -0.02 1.69 16 10 N -0.67 -27.24 6.44 -492.84 -3.17 -30.41 16 11 C 0.21 10.96 5.28 85.56 0.45 11.42 16 12 C -0.53 -29.88 9.32 25.60 0.24 -29.65 16 13 H 0.07 3.64 7.81 -2.91 -0.02 3.62 16 14 C 0.00 0.05 5.46 84.66 0.46 0.51 16 15 N -0.94 -56.21 13.29 21.45 0.28 -55.92 16 16 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 17 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 20 C -0.11 -3.17 7.43 31.12 0.23 -2.94 16 21 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 22 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 23 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.09 2.24 7.91 -2.39 -0.02 2.22 16 25 H 0.10 2.65 7.43 -2.39 -0.02 2.63 16 26 H 0.34 13.02 8.38 -89.69 -0.75 12.26 16 27 H -0.04 -2.14 8.13 -2.39 -0.02 -2.16 16 28 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.09 2.45 8.09 -2.39 -0.02 2.43 16 31 H 0.08 2.50 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -65.42 270.57 2.78 -62.63 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.37 Total: 12.48 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 3.48 Total: -8.97 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -2.89 Total: -86.34 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.20 Total: -25.60 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -65.42 2.78 -62.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596066950.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.274 kcal (2) G-P(sol) polarization free energy of solvation -65.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds