Wall clock time and date at job start Sun Mar 29 2020 22:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99837 * 2 1 4 4 C 1.50700 * 109.46760 * 270.00052 * 3 2 1 5 5 H 1.07994 * 120.00699 * 0.02562 * 4 3 2 6 6 C 1.37886 * 119.99737 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99690 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00006 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46838 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46944 * 119.99904 * 8 6 4 11 11 H 1.48500 * 109.46821 * 239.99437 * 8 6 4 12 12 C 1.34772 * 119.99871 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99878 * 185.43116 * 12 2 1 14 14 C 1.50699 * 120.00033 * 5.41990 * 12 2 1 15 15 H 1.08994 * 109.47143 * 310.19638 * 14 12 2 16 16 O 1.42900 * 109.46912 * 190.20101 * 14 12 2 17 17 C 1.52994 * 109.47166 * 70.20086 * 14 12 2 18 18 C 1.53007 * 117.51718 * 111.47253 * 17 14 12 19 19 C 1.52994 * 117.50124 * 180.10192 * 17 14 12 20 20 H 1.09001 * 109.47465 * 264.96489 * 1 2 3 21 21 H 1.09003 * 109.47390 * 24.96712 * 1 2 3 22 22 H 1.08999 * 109.47078 * 144.96099 * 1 2 3 23 23 H 1.08999 * 109.47410 * 29.99823 * 3 2 1 24 24 H 1.08994 * 109.47061 * 150.00555 * 3 2 1 25 25 H 0.97004 * 119.99662 * 179.97438 * 7 6 4 26 26 H 0.96705 * 114.00491 * 299.99717 * 16 14 12 27 27 H 1.09002 * 115.55112 * 325.77749 * 17 14 12 28 28 H 1.09002 * 117.49754 * 214.96681 * 18 17 14 29 29 H 1.08998 * 117.49804 * 359.97438 * 18 17 14 30 30 H 1.09003 * 117.49939 * 359.97438 * 19 17 14 31 31 H 1.09009 * 117.50029 * 144.99288 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5541 3.6176 -0.6732 8 14 3.4375 3.4171 -3.4340 9 1 2.8596 2.4171 -4.3673 10 1 2.8004 4.7382 -3.6666 11 1 4.9000 3.5248 -3.6680 12 6 2.1388 -1.1672 -0.0005 13 8 3.3476 -1.1696 0.0989 14 6 1.3904 -2.4693 -0.1244 15 1 0.5726 -2.4882 0.5960 16 8 2.2801 -3.5567 0.1363 17 6 0.8259 -2.6004 -1.5403 18 6 1.4299 -3.6762 -2.4453 19 6 0.0254 -3.8624 -1.8677 20 1 -0.3634 -0.0902 1.0237 21 1 -0.3634 0.9316 -0.4338 22 1 -0.3633 -0.8414 -0.5900 23 1 1.6084 2.0284 0.5138 24 1 3.1499 1.1384 0.5137 25 1 4.0316 4.4432 -0.8504 26 1 3.0336 -3.6022 -0.4681 27 1 0.5098 -1.6682 -2.0086 28 1 1.5109 -3.4518 -3.5089 29 1 2.2298 -4.2905 -2.0321 30 1 -0.0988 -4.5996 -1.0744 31 1 -0.8176 -3.7605 -2.5513 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596910952.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:11 Heat of formation + Delta-G solvation = -60.100011 kcal Electronic energy + Delta-G solvation = -14619.033198 eV Core-core repulsion = 12094.562384 eV Total energy + Delta-G solvation = -2524.470814 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.74534 -37.39958 -35.27639 -34.40842 -32.64650 -28.94820 -27.04917 -25.65017 -22.83065 -22.39377 -20.84850 -18.98672 -17.00638 -16.52019 -16.45195 -16.03504 -14.88612 -14.61577 -13.90489 -13.67017 -13.29331 -12.62834 -12.47772 -12.14883 -11.98946 -11.51218 -11.34259 -11.23332 -10.91201 -10.63770 -10.50182 -10.45075 -10.22274 -10.13566 -9.63930 -8.71202 -8.46933 -7.67696 -6.07392 -4.12621 3.24130 3.26983 3.34893 3.38706 3.72346 3.96284 4.40847 4.48773 4.75029 4.89987 4.93560 5.23170 5.28925 5.39856 5.63084 5.66366 5.69620 5.87151 5.90496 6.13062 6.13369 6.22138 7.00975 7.42175 7.50069 7.67721 7.89144 8.19894 8.36372 8.85260 9.01746 9.52536 11.00727 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.035329 B = 0.008800 C = 0.008194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.370320 B = 3181.042808 C = 3416.237034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.598 5.598 3 C 0.242 3.758 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.483 3.517 13 O -0.538 6.538 14 C 0.121 3.879 15 H 0.119 0.881 16 O -0.544 6.544 17 C -0.188 4.188 18 C -0.173 4.173 19 C -0.167 4.167 20 H 0.045 0.955 21 H 0.077 0.923 22 H 0.062 0.938 23 H 0.033 0.967 24 H 0.045 0.955 25 H 0.263 0.737 26 H 0.382 0.618 27 H 0.120 0.880 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.485 -11.068 -1.709 14.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.331 5.331 3 C 0.123 3.877 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.268 3.732 13 O -0.416 6.416 14 C 0.058 3.942 15 H 0.136 0.864 16 O -0.350 6.350 17 C -0.207 4.207 18 C -0.210 4.210 19 C -0.204 4.204 20 H 0.064 0.936 21 H 0.095 0.905 22 H 0.081 0.919 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.232 0.768 27 H 0.138 0.862 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.164 -11.000 -1.132 13.746 hybrid contribution 0.466 0.720 -1.457 1.691 sum -7.698 -10.281 -2.589 13.102 Atomic orbital electron populations 1.21809 0.81399 1.03233 1.00501 1.48151 1.06213 1.07799 1.70952 1.19333 0.92739 0.78061 0.97551 1.21458 1.36562 1.06350 0.92218 0.92433 1.24955 0.95354 0.96394 0.97471 1.69947 1.38276 1.14339 1.30680 0.86437 0.78112 0.78334 0.84501 1.19821 1.20917 1.20846 1.21056 0.88505 0.85844 0.77775 1.90665 1.14097 1.86923 1.49878 1.21334 0.91874 0.85623 0.95330 0.86397 1.86494 1.39904 1.47821 1.60793 1.23028 1.05817 0.95330 0.96503 1.22939 0.97034 1.01990 0.99045 1.22928 0.94708 0.99332 1.03447 0.93609 0.90461 0.91942 0.94922 0.93735 0.92717 0.76818 0.86232 0.88625 0.88195 0.88399 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 9.79 59.85 0.59 1.76 16 2 N -0.60 -12.74 2.86 -182.96 -0.52 -13.26 16 3 C 0.24 6.40 5.18 -5.19 -0.03 6.37 16 4 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 12 C 0.48 10.23 6.98 -10.99 -0.08 10.15 16 13 O -0.54 -13.81 15.86 -14.15 -0.22 -14.04 16 14 C 0.12 1.92 2.92 -27.89 -0.08 1.84 16 15 H 0.12 1.63 7.62 -51.93 -0.40 1.24 16 16 O -0.54 -8.68 12.19 -54.93 -0.67 -9.35 16 17 C -0.19 -2.57 4.59 -90.62 -0.42 -2.99 16 18 C -0.17 -2.10 9.74 -26.73 -0.26 -2.36 16 19 C -0.17 -1.81 10.19 -26.73 -0.27 -2.09 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.08 1.23 8.03 -51.93 -0.42 0.82 16 22 H 0.06 0.81 4.91 -51.93 -0.26 0.56 16 23 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 24 H 0.04 1.33 7.35 -51.93 -0.38 0.95 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.38 5.60 7.26 45.56 0.33 5.93 16 27 H 0.12 1.76 6.83 -51.93 -0.35 1.40 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.15 6.38 -51.93 -0.33 0.82 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 LS Contribution 264.42 15.07 3.98 3.98 Total: -1.00 -33.10 264.42 -6.14 -39.24 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -3.46 Total: 3.50 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -0.97 Total: -0.92 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.21 Total: -39.16 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.89 Total: -23.39 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.10 -6.14 -39.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596910952.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.860 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds