Wall clock time and date at job start Sun Mar 29 2020 22:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.50702 * 109.47034 * 90.00162 * 3 2 1 5 5 H 1.08002 * 119.99777 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00392 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99817 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00435 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46989 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47120 * 119.99499 * 8 6 4 11 11 H 1.48497 * 109.47257 * 239.99831 * 8 6 4 12 12 C 1.34777 * 119.99873 * 180.28195 * 2 1 3 13 13 O 1.21283 * 120.00222 * 179.97438 * 12 2 1 14 14 C 1.50699 * 119.99772 * 359.97438 * 12 2 1 15 15 H 1.08997 * 109.47441 * 55.00080 * 14 12 2 16 16 O 1.42904 * 109.46773 * 175.00264 * 14 12 2 17 17 C 1.53002 * 109.47371 * 294.99944 * 14 12 2 18 18 C 1.52998 * 117.50233 * 248.75224 * 17 14 12 19 19 C 1.53000 * 117.50015 * 180.08776 * 17 14 12 20 20 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 21 21 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 22 22 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 23 23 H 1.08993 * 109.47575 * 210.00600 * 3 2 1 24 24 H 1.09001 * 109.46870 * 330.00556 * 3 2 1 25 25 H 0.96996 * 120.00179 * 180.02562 * 7 6 4 26 26 H 0.96699 * 114.00243 * 60.00506 * 16 14 12 27 27 H 1.09003 * 115.54677 * 34.41988 * 17 14 12 28 28 H 1.09003 * 117.49675 * 359.97438 * 18 17 14 29 29 H 1.08993 * 117.50328 * 145.02271 * 18 17 14 30 30 H 1.08999 * 117.49686 * 214.98062 * 19 17 14 31 31 H 1.09003 * 117.49645 * 359.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 1 2.0982 1.0956 2.2417 6 6 3.1262 2.8778 1.6729 7 7 3.5535 3.6180 0.6733 8 14 3.4382 3.4166 3.4340 9 1 2.8611 2.4161 4.3674 10 1 4.9008 3.5253 3.6667 11 1 2.8002 4.7370 3.6681 12 6 2.1389 -1.1672 -0.0057 13 8 3.3517 -1.1673 -0.0062 14 6 1.3853 -2.4722 -0.0116 15 1 0.6929 -2.4882 -0.8532 16 8 2.3095 -3.5553 -0.1344 17 6 0.6029 -2.6153 1.2954 18 6 1.0625 -3.6925 2.2798 19 6 -0.2312 -3.8839 1.4843 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3633 0.8925 -0.5094 22 1 -0.3633 -0.8875 -0.5181 23 1 3.1499 1.1384 -0.5139 24 1 1.6085 2.0284 -0.5138 25 1 4.0304 4.4438 0.8505 26 1 2.9571 -3.6030 0.5822 27 1 0.2096 -1.6878 1.7118 28 1 1.9222 -4.2997 1.9961 29 1 0.9714 -3.4741 3.3437 30 1 -1.1729 -3.7912 2.0253 31 1 -0.2228 -4.6165 0.6772 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596910953.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:14 Heat of formation + Delta-G solvation = -59.350956 kcal Electronic energy + Delta-G solvation = -14619.969453 eV Core-core repulsion = 12095.531120 eV Total energy + Delta-G solvation = -2524.438333 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.75550 -37.39086 -35.30349 -34.38959 -32.64423 -28.96872 -27.02821 -25.66968 -22.82949 -22.39745 -20.84656 -18.98896 -17.00975 -16.53190 -16.47725 -16.04248 -14.83523 -14.71296 -13.92945 -13.59295 -13.22895 -12.71615 -12.45946 -12.09384 -12.03220 -11.51689 -11.37159 -11.23964 -10.89340 -10.63522 -10.49319 -10.44506 -10.20281 -10.14770 -9.63317 -8.70411 -8.45835 -7.69106 -6.06417 -4.11167 3.25064 3.27947 3.35738 3.39824 3.73224 3.95501 4.42069 4.45102 4.73460 4.87990 4.94226 5.23697 5.30166 5.38303 5.57817 5.63150 5.71525 5.85668 5.92139 6.06116 6.12557 6.26288 6.99977 7.40585 7.49836 7.67235 7.89831 8.20854 8.35382 8.86369 9.02269 9.53801 11.01866 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036988 B = 0.008576 C = 0.008124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.826311 B = 3263.987700 C = 3445.884716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.598 5.598 3 C 0.243 3.757 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.480 3.520 13 O -0.535 6.535 14 C 0.121 3.879 15 H 0.120 0.880 16 O -0.543 6.543 17 C -0.191 4.191 18 C -0.174 4.174 19 C -0.167 4.167 20 H 0.052 0.948 21 H 0.069 0.931 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.033 0.967 25 H 0.263 0.737 26 H 0.381 0.619 27 H 0.121 0.879 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.967 -11.097 0.953 14.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.331 5.331 3 C 0.124 3.876 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.209 1.209 12 C 0.266 3.734 13 O -0.413 6.413 14 C 0.058 3.942 15 H 0.137 0.863 16 O -0.349 6.349 17 C -0.209 4.209 18 C -0.211 4.211 19 C -0.204 4.204 20 H 0.070 0.930 21 H 0.087 0.913 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.231 0.769 27 H 0.139 0.861 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.559 -11.030 0.369 13.966 hybrid contribution 0.382 0.709 1.524 1.723 sum -8.178 -10.321 1.893 13.303 Atomic orbital electron populations 1.21745 0.81408 1.01809 1.01129 1.48174 1.06191 1.07857 1.70889 1.19341 0.92642 0.78020 0.97610 1.21444 1.36460 1.06219 0.92247 0.92454 1.24948 0.95371 0.96412 0.97475 1.69942 1.38407 1.14349 1.30676 0.86435 0.78105 0.78306 0.84528 1.19834 1.20844 1.20938 1.21071 0.88615 0.85842 0.77889 1.90679 1.13739 1.86936 1.49935 1.21336 0.90000 0.85683 0.97142 0.86258 1.86500 1.46919 1.48213 1.53274 1.23114 1.04388 0.95401 0.98020 1.22946 0.98786 1.02101 0.97280 1.22928 0.95010 0.99325 1.03147 0.92995 0.91258 0.92415 0.93842 0.94902 0.92736 0.76882 0.86143 0.88238 0.88654 0.88813 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 9.12 59.85 0.55 1.84 16 2 N -0.60 -12.68 2.86 -182.95 -0.52 -13.20 16 3 C 0.24 6.41 5.21 -5.19 -0.03 6.38 16 4 C -0.52 -14.94 9.39 -34.44 -0.32 -15.26 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.48 10.14 7.07 -10.99 -0.08 10.07 16 13 O -0.54 -13.79 15.90 -14.31 -0.23 -14.02 16 14 C 0.12 1.90 2.93 -27.88 -0.08 1.82 16 15 H 0.12 1.64 7.13 -51.93 -0.37 1.27 16 16 O -0.54 -8.65 12.15 -55.09 -0.67 -9.32 16 17 C -0.19 -2.55 4.99 -90.62 -0.45 -3.01 16 18 C -0.17 -2.08 9.74 -26.69 -0.26 -2.34 16 19 C -0.17 -1.78 10.19 -26.69 -0.27 -2.06 16 20 H 0.05 0.77 6.97 -51.93 -0.36 0.40 16 21 H 0.07 1.03 7.89 -51.93 -0.41 0.62 16 22 H 0.06 0.70 6.15 -51.93 -0.32 0.38 16 23 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 24 H 0.03 0.87 7.89 -51.93 -0.41 0.46 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.38 5.57 7.31 45.56 0.33 5.90 16 27 H 0.12 1.70 5.89 -51.93 -0.31 1.40 16 28 H 0.10 1.14 6.37 -51.93 -0.33 0.81 16 29 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 262.72 15.07 3.96 3.96 Total: -1.00 -33.34 262.72 -6.16 -39.51 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -3.37 Total: 3.13 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.05 Total: -0.94 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.21 Total: -39.20 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.90 Total: -23.34 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.34 -6.16 -39.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596910953.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.844 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds