Wall clock time and date at job start Sun Mar 29 2020 22:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.50702 * 109.47034 * 90.00162 * 3 2 1 5 5 H 1.08002 * 119.99777 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00392 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99817 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00435 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46989 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47120 * 119.99499 * 8 6 4 11 11 H 1.48497 * 109.47257 * 239.99831 * 8 6 4 12 12 C 1.34777 * 119.99873 * 180.28195 * 2 1 3 13 13 O 1.21283 * 120.00222 * 179.97438 * 12 2 1 14 14 C 1.50699 * 119.99772 * 359.97438 * 12 2 1 15 15 H 1.08997 * 109.47441 * 55.00080 * 14 12 2 16 16 O 1.42904 * 109.46773 * 175.00264 * 14 12 2 17 17 C 1.53002 * 109.47371 * 294.99944 * 14 12 2 18 18 C 1.52998 * 117.50233 * 248.75224 * 17 14 12 19 19 C 1.53000 * 117.50015 * 180.08776 * 17 14 12 20 20 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 21 21 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 22 22 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 23 23 H 1.08993 * 109.47575 * 210.00600 * 3 2 1 24 24 H 1.09001 * 109.46870 * 330.00556 * 3 2 1 25 25 H 0.96996 * 120.00179 * 180.02562 * 7 6 4 26 26 H 0.96699 * 114.00243 * 60.00506 * 16 14 12 27 27 H 1.09003 * 115.54677 * 34.41988 * 17 14 12 28 28 H 1.09003 * 117.49675 * 359.97438 * 18 17 14 29 29 H 1.08993 * 117.50328 * 145.02271 * 18 17 14 30 30 H 1.08999 * 117.49686 * 214.98062 * 19 17 14 31 31 H 1.09003 * 117.49645 * 359.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 1 2.0982 1.0956 2.2417 6 6 3.1262 2.8778 1.6729 7 7 3.5535 3.6180 0.6733 8 14 3.4382 3.4166 3.4340 9 1 2.8611 2.4161 4.3674 10 1 4.9008 3.5253 3.6667 11 1 2.8002 4.7370 3.6681 12 6 2.1389 -1.1672 -0.0057 13 8 3.3517 -1.1673 -0.0062 14 6 1.3853 -2.4722 -0.0116 15 1 0.6929 -2.4882 -0.8532 16 8 2.3095 -3.5553 -0.1344 17 6 0.6029 -2.6153 1.2954 18 6 1.0625 -3.6925 2.2798 19 6 -0.2312 -3.8839 1.4843 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3633 0.8925 -0.5094 22 1 -0.3633 -0.8875 -0.5181 23 1 3.1499 1.1384 -0.5139 24 1 1.6085 2.0284 -0.5138 25 1 4.0304 4.4438 0.8505 26 1 2.9571 -3.6030 0.5822 27 1 0.2096 -1.6878 1.7118 28 1 1.9222 -4.2997 1.9961 29 1 0.9714 -3.4741 3.3437 30 1 -1.1729 -3.7912 2.0253 31 1 -0.2228 -4.6165 0.6772 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596910953.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:14 Heat of formation + Delta-G solvation = -83.300759 kcal Electronic energy + Delta-G solvation = -14621.007995 eV Core-core repulsion = 12095.531120 eV Total energy + Delta-G solvation = -2525.476874 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.22872 -38.72348 -36.86900 -35.74839 -34.75548 -30.70562 -28.57155 -27.30130 -24.77829 -23.27585 -21.99099 -20.55378 -18.71217 -18.42227 -17.80485 -17.43973 -16.66467 -16.15613 -15.57667 -15.00809 -14.64650 -14.25733 -14.03210 -13.64412 -13.49834 -13.16039 -12.92776 -12.69963 -12.56150 -12.33728 -12.24486 -11.72599 -11.71779 -11.43176 -11.16457 -10.67362 -10.28224 -9.48422 -8.25066 -6.39976 1.34743 1.37158 1.48796 1.67614 2.24803 2.39662 2.86453 3.04600 3.22697 3.56557 3.77995 3.95563 4.17360 4.34383 4.40684 4.53241 4.70133 4.81629 4.89307 4.97376 5.03243 5.17889 5.22316 5.31404 5.52621 5.79118 6.02607 6.41686 6.67006 6.73582 7.23444 7.38896 8.82600 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036988 B = 0.008576 C = 0.008124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.826311 B = 3263.987700 C = 3445.884716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.602 5.602 3 C 0.255 3.745 4 C -0.540 4.540 5 H 0.054 0.946 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.469 3.531 13 O -0.596 6.596 14 C 0.138 3.862 15 H 0.147 0.853 16 O -0.548 6.548 17 C -0.209 4.209 18 C -0.184 4.184 19 C -0.135 4.135 20 H 0.063 0.937 21 H 0.073 0.927 22 H 0.099 0.901 23 H -0.005 1.005 24 H 0.026 0.974 25 H 0.267 0.733 26 H 0.385 0.615 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.926 -12.262 2.165 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.334 5.334 3 C 0.134 3.866 4 C -0.579 4.579 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.193 1.193 12 C 0.257 3.743 13 O -0.477 6.477 14 C 0.075 3.925 15 H 0.164 0.836 16 O -0.354 6.354 17 C -0.227 4.227 18 C -0.221 4.221 19 C -0.172 4.172 20 H 0.082 0.918 21 H 0.091 0.909 22 H 0.117 0.883 23 H 0.013 0.987 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.236 0.764 27 H 0.132 0.868 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.134 0.866 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.576 -12.214 1.579 16.233 hybrid contribution 0.990 1.049 1.101 1.815 sum -9.587 -11.164 2.680 14.957 Atomic orbital electron populations 1.22067 0.77687 1.04085 1.02633 1.48185 1.08498 1.06273 1.70470 1.18830 0.91148 0.80388 0.96233 1.21701 1.36803 1.06488 0.92912 0.92773 1.25896 0.94902 0.96452 1.02108 1.70060 1.38956 1.14856 1.33060 0.85338 0.77868 0.78461 0.78968 1.18986 1.20802 1.19326 1.22247 0.88332 0.87534 0.76190 1.90638 1.16576 1.87980 1.52534 1.21339 0.89469 0.82001 0.99663 0.83629 1.86484 1.47276 1.47789 1.53861 1.22964 1.06076 0.96448 0.97253 1.23084 1.00044 1.01446 0.97503 1.23023 0.95064 0.96633 1.02467 0.91810 0.90860 0.88298 0.98665 0.95563 0.92360 0.76404 0.86791 0.88116 0.88150 0.86635 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.25 9.12 127.77 1.17 3.41 16 2 N -0.60 -25.68 2.86 -851.12 -2.43 -28.11 16 3 C 0.26 13.98 5.21 85.63 0.45 14.43 16 4 C -0.54 -31.37 9.39 25.60 0.24 -31.13 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.30 5.46 84.65 0.46 0.77 16 7 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 8 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 C 0.47 19.93 7.07 87.66 0.62 20.55 16 13 O -0.60 -31.90 15.90 15.95 0.25 -31.65 16 14 C 0.14 4.06 2.93 29.85 0.09 4.15 16 15 H 0.15 3.50 7.13 -2.39 -0.02 3.48 16 16 O -0.55 -16.68 12.15 -129.99 -1.58 -18.26 16 17 C -0.21 -5.02 4.99 -10.79 -0.05 -5.08 16 18 C -0.18 -3.91 9.74 30.62 0.30 -3.61 16 19 C -0.14 -2.33 10.19 30.62 0.31 -2.01 16 20 H 0.06 1.74 6.97 -2.39 -0.02 1.72 16 21 H 0.07 2.08 7.89 -2.39 -0.02 2.06 16 22 H 0.10 2.06 6.15 -2.39 -0.01 2.05 16 23 H 0.00 -0.30 7.42 -2.39 -0.02 -0.32 16 24 H 0.03 1.45 7.89 -2.39 -0.02 1.43 16 25 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 26 H 0.39 11.06 7.31 -74.06 -0.54 10.52 16 27 H 0.11 2.93 5.89 -2.39 -0.01 2.92 16 28 H 0.10 2.10 6.37 -2.39 -0.02 2.09 16 29 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -74.52 262.72 2.73 -71.79 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.60 Total: 14.13 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 3.58 Total: 1.47 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -2.15 Total: -84.55 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -1.33 Total: -49.91 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -74.52 2.73 -71.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596910953.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.506 kcal (2) G-P(sol) polarization free energy of solvation -74.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds