Wall clock time and date at job start Sun Mar 29 2020 21:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46494 * 109.47453 * 2 1 4 4 C 1.37094 * 120.00099 * 269.03708 * 3 2 1 5 5 H 1.08008 * 119.99799 * 191.10839 * 4 3 2 6 6 C 1.38943 * 120.00266 * 11.10923 * 4 3 2 7 7 N 1.31416 * 119.99804 * 8.79384 * 6 4 3 8 8 Si 1.86796 * 120.00342 * 188.79704 * 6 4 3 9 9 H 1.48498 * 109.47452 * 59.99999 * 8 6 4 10 10 H 1.48497 * 109.47417 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47217 * 299.99793 * 8 6 4 12 12 C 1.34777 * 120.00057 * 89.03732 * 3 2 1 13 13 O 1.21285 * 120.00272 * 185.13158 * 12 3 2 14 14 C 1.50704 * 119.99678 * 5.13221 * 12 3 2 15 15 H 1.09000 * 109.47195 * 311.23499 * 14 12 3 16 16 O 1.42900 * 109.46856 * 191.24441 * 14 12 3 17 17 C 1.52992 * 109.47385 * 71.24046 * 14 12 3 18 18 C 1.53003 * 117.49921 * 173.88936 * 17 14 12 19 19 C 1.52994 * 60.03007 * 107.47970 * 18 17 14 20 20 H 1.08998 * 109.47494 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47008 * 299.99693 * 1 2 3 22 22 H 1.09003 * 109.47327 * 59.99402 * 1 2 3 23 23 H 1.09006 * 109.46757 * 239.99834 * 2 1 3 24 24 H 1.09003 * 109.47327 * 120.00598 * 2 1 3 25 25 H 0.96997 * 119.99828 * 179.97438 * 7 6 4 26 26 H 0.96701 * 114.00250 * 299.99633 * 16 14 12 27 27 H 1.08998 * 115.54967 * 28.22323 * 17 14 12 28 28 H 1.09001 * 117.49957 * 214.98089 * 18 17 14 29 29 H 1.09004 * 117.49730 * 359.97438 * 18 17 14 30 30 H 1.09000 * 117.50029 * 107.50095 * 19 18 17 31 31 H 1.08996 * 117.50206 * 252.51924 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2657 2.0208 -1.1871 5 1 2.7907 2.9646 -1.1928 6 6 1.8409 1.4549 -2.3829 7 7 1.0557 0.4012 -2.3688 8 14 2.3861 2.1917 -4.0105 9 1 3.8678 2.1510 -4.1008 10 1 1.7999 1.4100 -5.1288 11 1 1.9234 3.6002 -4.0960 12 6 2.2245 2.0230 1.1670 13 8 2.5391 3.1944 1.1676 14 6 2.0642 1.2852 2.4713 15 1 1.1182 0.7437 2.4685 16 8 2.0745 2.2203 3.5518 17 6 3.2181 0.2953 2.6424 18 6 3.3162 -0.4520 3.9740 19 6 2.8677 -1.1931 2.7129 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.8932 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 0.7589 0.0064 -3.2035 26 1 2.8882 2.7388 3.6156 27 1 4.1507 0.5706 2.1500 28 1 4.3133 -0.6686 4.3573 29 1 2.5589 -0.2380 4.7282 30 1 3.5698 -1.8973 2.2664 31 1 1.8153 -1.4665 2.6371 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596918530.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:52 Heat of formation + Delta-G solvation = -45.128676 kcal Electronic energy + Delta-G solvation = -15069.247389 eV Core-core repulsion = 12545.425781 eV Total energy + Delta-G solvation = -2523.821608 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.30376 -36.93493 -35.54877 -34.38301 -31.71172 -29.41500 -27.59245 -24.46587 -22.47483 -21.89733 -20.83316 -19.32682 -17.06317 -16.48041 -16.18637 -15.04929 -14.69341 -14.29696 -13.51064 -13.27914 -13.07963 -12.74968 -12.47154 -11.71625 -11.38372 -11.28889 -11.11017 -11.03413 -10.64960 -10.40014 -10.32373 -10.17314 -10.08975 -9.96656 -9.61090 -8.86447 -8.21122 -7.70971 -6.23093 -3.83659 3.16301 3.23121 3.27215 3.77947 3.96550 4.10092 4.73018 4.89627 5.05264 5.15352 5.25820 5.29254 5.66106 5.81430 5.83066 6.04790 6.10175 6.31022 6.33591 6.44812 6.65914 6.76136 6.84735 7.38646 7.54338 7.80915 8.00826 8.14795 8.53018 9.17148 9.44286 9.96384 10.67559 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039436 B = 0.010445 C = 0.009420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.834050 B = 2679.957431 C = 2971.603822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.108 3.892 3 N -0.434 5.434 4 C -0.296 4.296 5 H 0.100 0.900 6 C 0.023 3.977 7 N -0.878 5.878 8 Si 0.930 3.070 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.415 3.585 13 O -0.593 6.593 14 C 0.129 3.871 15 H 0.107 0.893 16 O -0.546 6.546 17 C -0.180 4.180 18 C -0.169 4.169 19 C -0.170 4.170 20 H 0.036 0.964 21 H 0.015 0.985 22 H 0.093 0.907 23 H 0.111 0.889 24 H 0.044 0.956 25 H 0.265 0.735 26 H 0.378 0.622 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.038 -5.603 5.900 8.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 N -0.153 5.153 4 C -0.424 4.424 5 H 0.118 0.882 6 C -0.178 4.178 7 N -0.519 5.519 8 Si 0.757 3.243 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.200 1.200 12 C 0.202 3.798 13 O -0.479 6.479 14 C 0.067 3.933 15 H 0.125 0.875 16 O -0.350 6.350 17 C -0.199 4.199 18 C -0.206 4.206 19 C -0.207 4.207 20 H 0.055 0.945 21 H 0.034 0.966 22 H 0.111 0.889 23 H 0.129 0.871 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.226 0.774 27 H 0.124 0.876 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.503 -5.410 5.828 8.093 hybrid contribution 0.656 0.358 -1.064 1.300 sum 2.159 -5.052 4.764 7.272 Atomic orbital electron populations 1.22188 0.96989 0.99586 1.01548 1.21845 0.94443 0.83438 1.01781 1.43825 1.55147 1.11766 1.04530 1.19773 1.33761 1.06388 0.82443 0.88187 1.25280 0.95985 0.96857 0.99667 1.70098 1.32542 1.22237 1.27056 0.85925 0.78863 0.78922 0.80548 1.20037 1.20916 1.19964 1.20646 0.85726 0.87840 0.85571 1.90504 1.54252 1.16339 1.86815 1.21264 0.97559 0.88175 0.86326 0.87514 1.86460 1.44423 1.54797 1.49339 1.22939 1.01160 0.93891 1.01896 1.22894 1.02547 1.03865 0.91282 1.22982 1.02369 0.93848 1.01457 0.94524 0.96569 0.88875 0.87141 0.93788 0.92376 0.77434 0.87593 0.89086 0.88446 0.88626 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.52 37.15 0.35 -2.77 16 2 C 0.11 2.41 4.95 -4.05 -0.02 2.39 16 3 N -0.43 -11.10 2.62 -114.82 -0.30 -11.40 16 4 C -0.30 -8.19 9.49 -14.94 -0.14 -8.33 16 5 H 0.10 2.92 7.27 -52.48 -0.38 2.54 16 6 C 0.02 0.60 5.26 -17.47 -0.09 0.50 16 7 N -0.88 -22.18 7.59 55.50 0.42 -21.76 16 8 Si 0.93 20.57 29.56 -169.99 -5.03 15.55 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 C 0.41 10.35 6.89 -10.98 -0.08 10.28 16 13 O -0.59 -16.87 15.93 -14.10 -0.22 -17.09 16 14 C 0.13 2.56 2.82 -27.88 -0.08 2.48 16 15 H 0.11 2.07 6.40 -51.93 -0.33 1.74 16 16 O -0.55 -10.55 12.84 -54.89 -0.70 -11.25 16 17 C -0.18 -2.96 4.70 -90.59 -0.43 -3.39 16 18 C -0.17 -2.23 10.04 -26.73 -0.27 -2.50 16 19 C -0.17 -2.34 8.27 -26.70 -0.22 -2.56 16 20 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.02 0.32 7.36 -51.93 -0.38 -0.06 16 22 H 0.09 2.29 6.12 -51.93 -0.32 1.97 16 23 H 0.11 2.67 5.84 -51.93 -0.30 2.37 16 24 H 0.04 0.84 3.24 -51.93 -0.17 0.68 16 25 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 26 H 0.38 6.52 8.72 45.56 0.40 6.92 16 27 H 0.11 1.85 8.06 -51.93 -0.42 1.43 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.10 1.33 7.58 -51.93 -0.39 0.93 16 LS Contribution 253.28 15.07 3.82 3.82 Total: -1.00 -29.93 253.28 -6.11 -36.05 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -3.13 Total: 9.99 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -0.97 Total: -3.91 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.12 Total: -33.16 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.93 Total: -28.35 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.93 -6.11 -36.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596918530.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.081 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds