Wall clock time and date at job start Sun Mar 29 2020 21:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46494 * 109.47453 * 2 1 4 4 C 1.37094 * 120.00099 * 269.03708 * 3 2 1 5 5 H 1.08008 * 119.99799 * 191.10839 * 4 3 2 6 6 C 1.38943 * 120.00266 * 11.10923 * 4 3 2 7 7 N 1.31416 * 119.99804 * 8.79384 * 6 4 3 8 8 Si 1.86796 * 120.00342 * 188.79704 * 6 4 3 9 9 H 1.48498 * 109.47452 * 59.99999 * 8 6 4 10 10 H 1.48497 * 109.47417 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47217 * 299.99793 * 8 6 4 12 12 C 1.34777 * 120.00057 * 89.03732 * 3 2 1 13 13 O 1.21285 * 120.00272 * 185.13158 * 12 3 2 14 14 C 1.50704 * 119.99678 * 5.13221 * 12 3 2 15 15 H 1.09000 * 109.47195 * 311.23499 * 14 12 3 16 16 O 1.42900 * 109.46856 * 191.24441 * 14 12 3 17 17 C 1.52992 * 109.47385 * 71.24046 * 14 12 3 18 18 C 1.53003 * 117.49921 * 173.88936 * 17 14 12 19 19 C 1.52994 * 60.03007 * 107.47970 * 18 17 14 20 20 H 1.08998 * 109.47494 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47008 * 299.99693 * 1 2 3 22 22 H 1.09003 * 109.47327 * 59.99402 * 1 2 3 23 23 H 1.09006 * 109.46757 * 239.99834 * 2 1 3 24 24 H 1.09003 * 109.47327 * 120.00598 * 2 1 3 25 25 H 0.96997 * 119.99828 * 179.97438 * 7 6 4 26 26 H 0.96701 * 114.00250 * 299.99633 * 16 14 12 27 27 H 1.08998 * 115.54967 * 28.22323 * 17 14 12 28 28 H 1.09001 * 117.49957 * 214.98089 * 18 17 14 29 29 H 1.09004 * 117.49730 * 359.97438 * 18 17 14 30 30 H 1.09000 * 117.50029 * 107.50095 * 19 18 17 31 31 H 1.08996 * 117.50206 * 252.51924 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2657 2.0208 -1.1871 5 1 2.7907 2.9646 -1.1928 6 6 1.8409 1.4549 -2.3829 7 7 1.0557 0.4012 -2.3688 8 14 2.3861 2.1917 -4.0105 9 1 3.8678 2.1510 -4.1008 10 1 1.7999 1.4100 -5.1288 11 1 1.9234 3.6002 -4.0960 12 6 2.2245 2.0230 1.1670 13 8 2.5391 3.1944 1.1676 14 6 2.0642 1.2852 2.4713 15 1 1.1182 0.7437 2.4685 16 8 2.0745 2.2203 3.5518 17 6 3.2181 0.2953 2.6424 18 6 3.3162 -0.4520 3.9740 19 6 2.8677 -1.1931 2.7129 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.8932 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 0.7589 0.0064 -3.2035 26 1 2.8882 2.7388 3.6156 27 1 4.1507 0.5706 2.1500 28 1 4.3133 -0.6686 4.3573 29 1 2.5589 -0.2380 4.7282 30 1 3.5698 -1.8973 2.2664 31 1 1.8153 -1.4665 2.6371 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596918530.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:52 Heat of formation + Delta-G solvation = -65.146882 kcal Electronic energy + Delta-G solvation = -15070.115444 eV Core-core repulsion = 12545.425781 eV Total energy + Delta-G solvation = -2524.689663 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.02863 -38.47018 -37.31873 -36.00267 -33.70102 -31.26230 -29.24433 -26.37214 -24.02758 -23.22373 -22.21965 -21.09125 -18.98008 -18.31970 -17.66558 -16.80829 -16.29476 -15.95453 -15.23622 -15.04792 -14.68117 -14.50416 -13.97362 -13.57951 -13.14049 -12.88565 -12.81173 -12.51611 -12.30142 -12.14078 -11.99689 -11.87733 -11.61561 -11.36338 -11.03749 -10.77082 -10.10617 -9.67200 -8.21181 -5.90846 1.36807 1.41186 1.50683 1.92901 2.25964 2.78466 2.99948 3.07812 3.52877 3.74827 3.89981 4.04512 4.15040 4.35657 4.62722 4.67639 4.81574 4.93208 4.97075 5.02289 5.14208 5.20686 5.31340 5.39063 5.59317 5.96017 6.06591 6.52366 6.64271 7.16312 7.49042 8.00614 8.66078 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039436 B = 0.010445 C = 0.009420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.834050 B = 2679.957431 C = 2971.603822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.110 3.890 3 N -0.442 5.442 4 C -0.343 4.343 5 H 0.069 0.931 6 C -0.002 4.002 7 N -0.875 5.875 8 Si 0.989 3.011 9 H -0.272 1.272 10 H -0.266 1.266 11 H -0.282 1.282 12 C 0.397 3.603 13 O -0.643 6.643 14 C 0.144 3.856 15 H 0.114 0.886 16 O -0.551 6.551 17 C -0.207 4.207 18 C -0.141 4.141 19 C -0.162 4.162 20 H 0.067 0.933 21 H 0.019 0.981 22 H 0.060 0.940 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.272 0.728 26 H 0.385 0.615 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 -7.581 6.305 10.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.012 4.012 3 N -0.160 5.160 4 C -0.471 4.471 5 H 0.087 0.913 6 C -0.203 4.203 7 N -0.514 5.514 8 Si 0.813 3.187 9 H -0.197 1.197 10 H -0.190 1.190 11 H -0.207 1.207 12 C 0.187 3.813 13 O -0.532 6.532 14 C 0.081 3.919 15 H 0.132 0.868 16 O -0.356 6.356 17 C -0.227 4.227 18 C -0.178 4.178 19 C -0.199 4.199 20 H 0.086 0.914 21 H 0.038 0.962 22 H 0.079 0.921 23 H 0.110 0.890 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.234 0.766 27 H 0.108 0.892 28 H 0.132 0.868 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.395 -7.438 6.238 9.807 hybrid contribution 0.656 0.958 -1.198 1.668 sum 2.051 -6.480 5.040 8.462 Atomic orbital electron populations 1.22057 0.96282 1.01100 1.00109 1.21922 0.94940 0.81879 1.02497 1.44053 1.54814 1.12836 1.04251 1.19676 1.36346 1.06672 0.84428 0.91281 1.25944 0.95395 0.97118 1.01859 1.70200 1.31235 1.21838 1.28127 0.85062 0.78586 0.77902 0.77120 1.19712 1.19021 1.20737 1.21688 0.84706 0.87717 0.87237 1.90451 1.56326 1.18613 1.87836 1.21121 0.99248 0.88196 0.83295 0.86820 1.86420 1.45272 1.55167 1.48781 1.22693 0.99362 0.94913 1.05684 1.22987 1.03953 1.00755 0.90076 1.23154 1.03358 0.91777 1.01571 0.91434 0.96164 0.92074 0.88952 0.90445 0.91721 0.76564 0.89171 0.86844 0.87871 0.87048 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 9.52 71.98 0.68 -5.04 16 2 C 0.11 4.80 4.95 86.38 0.43 5.23 16 3 N -0.44 -23.03 2.62 -635.56 -1.67 -24.70 16 4 C -0.34 -19.65 9.49 84.04 0.80 -18.85 16 5 H 0.07 4.28 7.27 -2.91 -0.02 4.26 16 6 C 0.00 -0.09 5.26 84.92 0.45 0.36 16 7 N -0.87 -43.67 7.59 21.66 0.16 -43.51 16 8 Si 0.99 42.18 29.56 68.60 2.03 44.20 16 9 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 10 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 12 C 0.40 20.32 6.89 87.66 0.60 20.93 16 13 O -0.64 -38.18 15.93 15.75 0.25 -37.93 16 14 C 0.14 5.59 2.82 29.85 0.08 5.67 16 15 H 0.11 4.23 6.40 -2.39 -0.02 4.21 16 16 O -0.55 -20.96 12.84 -130.19 -1.67 -22.63 16 17 C -0.21 -6.48 4.70 -10.77 -0.05 -6.53 16 18 C -0.14 -3.22 10.04 30.59 0.31 -2.91 16 19 C -0.16 -3.91 8.27 30.62 0.25 -3.65 16 20 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 21 H 0.02 0.79 7.36 -2.39 -0.02 0.77 16 22 H 0.06 2.96 6.12 -2.39 -0.01 2.95 16 23 H 0.09 4.39 5.84 -2.38 -0.01 4.38 16 24 H 0.08 2.82 3.24 -2.39 -0.01 2.82 16 25 H 0.27 12.76 8.31 -92.71 -0.77 11.98 16 26 H 0.39 13.33 8.72 -74.06 -0.65 12.68 16 27 H 0.09 3.12 8.06 -2.39 -0.02 3.10 16 28 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.11 2.43 7.58 -2.39 -0.02 2.42 16 Total: -1.00 -66.04 253.28 3.16 -62.88 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.50 Total: 26.50 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 3.55 Total: -4.81 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -1.50 Total: -68.21 kcal Atomic # 8 Polarization: -59.14 SS G_CDS: -1.42 Total: -60.56 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -66.04 3.16 -62.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596918530.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.268 kcal (2) G-P(sol) polarization free energy of solvation -66.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds