Wall clock time and date at job start Sun Mar 29 2020 21:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47346 * 2 1 4 4 C 1.37096 * 120.00489 * 95.11138 * 3 2 1 5 5 H 1.07993 * 120.00175 * 170.84748 * 4 3 2 6 6 C 1.38955 * 119.99591 * 350.84306 * 4 3 2 7 7 N 1.31403 * 120.00333 * 333.45362 * 6 4 3 8 8 Si 1.86802 * 119.99487 * 153.45398 * 6 4 3 9 9 H 1.48500 * 109.46936 * 95.00075 * 8 6 4 10 10 H 1.48504 * 109.46840 * 214.99451 * 8 6 4 11 11 H 1.48498 * 109.47453 * 334.99664 * 8 6 4 12 12 C 1.34783 * 119.99576 * 275.11206 * 3 2 1 13 13 O 1.21294 * 119.99613 * 184.29815 * 12 3 2 14 14 C 1.50698 * 120.00002 * 4.30259 * 12 3 2 15 15 H 1.09001 * 109.47261 * 45.46293 * 14 12 3 16 16 O 1.42897 * 109.47134 * 165.46543 * 14 12 3 17 17 C 1.53002 * 109.47033 * 285.46634 * 14 12 3 18 18 C 1.52991 * 117.51981 * 116.48056 * 17 14 12 19 19 C 1.52998 * 117.49979 * 185.11412 * 17 14 12 20 20 H 1.09000 * 109.47101 * 305.52649 * 1 2 3 21 21 H 1.08993 * 109.47095 * 65.52452 * 1 2 3 22 22 H 1.08999 * 109.47050 * 185.52817 * 1 2 3 23 23 H 1.08994 * 109.47184 * 239.99422 * 2 1 3 24 24 H 1.09005 * 109.47146 * 119.99428 * 2 1 3 25 25 H 0.97003 * 120.00110 * 180.02562 * 7 6 4 26 26 H 0.96704 * 114.00090 * 59.99388 * 16 14 12 27 27 H 1.09005 * 115.54445 * 330.77491 * 17 14 12 28 28 H 1.09006 * 117.50120 * 214.96948 * 18 17 14 29 29 H 1.09003 * 117.50363 * 359.97438 * 18 17 14 30 30 H 1.09007 * 117.49550 * 359.96769 * 19 17 14 31 31 H 1.08990 * 117.50280 * 144.99855 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3467 1.9923 1.1825 5 1 2.8434 2.9512 1.1751 6 6 2.0401 1.3779 2.3905 7 7 1.0325 0.5376 2.4632 8 14 3.0604 1.7466 3.9112 9 1 2.4052 2.8221 4.6981 10 1 3.1698 0.5212 4.7430 11 1 4.4173 2.1895 3.5015 12 6 2.1450 2.0511 -1.1627 13 8 2.6223 3.1662 -1.1712 14 6 1.6934 1.4149 -2.4519 15 1 0.7139 0.9587 -2.3084 16 8 1.6095 2.4125 -3.4716 17 6 2.6997 0.3411 -2.8706 18 6 2.2070 -1.1063 -2.9259 19 6 2.4826 -0.3420 -4.2223 20 1 -0.3633 0.5972 0.8364 21 1 -0.3633 0.4257 -0.9353 22 1 -0.3633 -1.0229 0.0990 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8901 25 1 0.8183 0.1089 3.3067 26 1 2.4467 2.8612 -3.6527 27 1 3.7282 0.5109 -2.5519 28 1 2.9113 -1.8889 -2.6435 29 1 1.1658 -1.2940 -2.6636 30 1 1.6225 -0.0266 -4.8131 31 1 3.3681 -0.6217 -4.7928 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596918531.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:55 Heat of formation + Delta-G solvation = -68.227211 kcal Electronic energy + Delta-G solvation = -15081.439574 eV Core-core repulsion = 12556.616338 eV Total energy + Delta-G solvation = -2524.823236 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.04151 -38.44537 -37.30992 -36.00008 -33.80979 -31.25963 -29.23631 -26.39499 -24.08786 -23.25607 -22.16719 -21.11629 -18.94988 -18.28674 -17.68310 -16.81603 -16.34836 -15.94605 -15.29786 -15.04828 -14.68840 -14.42142 -14.03118 -13.74532 -13.15838 -12.93145 -12.80733 -12.50517 -12.29504 -12.13787 -12.03984 -11.91246 -11.55165 -11.33821 -10.98119 -10.83367 -10.09351 -9.70749 -8.36966 -5.86081 1.32244 1.41363 1.53690 1.91625 2.26644 2.78181 2.95656 3.04443 3.53286 3.72457 3.90134 4.03747 4.14963 4.32424 4.58695 4.65574 4.81589 4.87489 4.90463 5.02641 5.11388 5.22125 5.31438 5.40650 5.45442 5.92248 6.03409 6.49912 6.63841 7.15778 7.47711 8.01915 8.60518 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039624 B = 0.010490 C = 0.009454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.466439 B = 2668.542499 C = 2960.895949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.110 3.890 3 N -0.439 5.439 4 C -0.360 4.360 5 H 0.068 0.932 6 C 0.010 3.990 7 N -0.860 5.860 8 Si 0.977 3.023 9 H -0.277 1.277 10 H -0.263 1.263 11 H -0.278 1.278 12 C 0.397 3.603 13 O -0.643 6.643 14 C 0.141 3.859 15 H 0.117 0.883 16 O -0.551 6.551 17 C -0.209 4.209 18 C -0.163 4.163 19 C -0.141 4.141 20 H 0.059 0.941 21 H 0.032 0.968 22 H 0.069 0.931 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.275 0.725 26 H 0.385 0.615 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 -8.131 -7.103 10.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.012 4.012 3 N -0.157 5.157 4 C -0.488 4.488 5 H 0.086 0.914 6 C -0.194 4.194 7 N -0.497 5.497 8 Si 0.800 3.200 9 H -0.203 1.203 10 H -0.187 1.187 11 H -0.203 1.203 12 C 0.186 3.814 13 O -0.533 6.533 14 C 0.079 3.921 15 H 0.134 0.866 16 O -0.357 6.357 17 C -0.228 4.228 18 C -0.199 4.199 19 C -0.178 4.178 20 H 0.078 0.922 21 H 0.051 0.949 22 H 0.088 0.912 23 H 0.103 0.897 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.234 0.766 27 H 0.110 0.890 28 H 0.132 0.868 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.181 -7.952 -6.948 10.561 hybrid contribution 0.948 0.763 1.146 1.672 sum 1.129 -7.189 -5.802 9.307 Atomic orbital electron populations 1.22024 0.95779 1.01912 1.00259 1.21791 0.95322 0.81912 1.02180 1.44043 1.54488 1.12378 1.04794 1.19558 1.38876 1.06286 0.84060 0.91380 1.25836 0.96023 0.96721 1.00819 1.70224 1.22377 1.29239 1.27871 0.85207 0.78755 0.78334 0.77677 1.20275 1.18680 1.20340 1.21648 0.85589 0.86773 0.87378 1.90447 1.52368 1.22891 1.87588 1.21239 0.99529 0.87281 0.84075 0.86600 1.86423 1.39113 1.54593 1.55584 1.22715 0.99389 0.95081 1.05622 1.23159 1.03233 0.92208 1.01338 1.22987 1.04292 1.01036 0.89485 0.92220 0.94898 0.91213 0.89668 0.90746 0.91445 0.76563 0.88986 0.86839 0.87584 0.87971 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.69 9.47 71.98 0.68 -5.01 16 2 C 0.11 4.74 4.99 86.38 0.43 5.17 16 3 N -0.44 -22.89 2.64 -635.53 -1.67 -24.56 16 4 C -0.36 -20.77 9.42 84.04 0.79 -19.98 16 5 H 0.07 4.30 7.32 -2.91 -0.02 4.28 16 6 C 0.01 0.53 4.84 84.93 0.41 0.95 16 7 N -0.86 -43.19 8.66 21.66 0.19 -43.01 16 8 Si 0.98 41.81 29.63 68.60 2.03 43.84 16 9 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 10 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 12 C 0.40 20.31 6.87 87.66 0.60 20.91 16 13 O -0.64 -38.30 15.90 15.55 0.25 -38.06 16 14 C 0.14 5.47 2.85 29.85 0.09 5.56 16 15 H 0.12 4.32 5.47 -2.39 -0.01 4.31 16 16 O -0.55 -21.08 12.89 -130.36 -1.68 -22.76 16 17 C -0.21 -6.43 4.51 -10.80 -0.05 -6.48 16 18 C -0.16 -3.83 8.03 30.59 0.25 -3.58 16 19 C -0.14 -3.17 10.06 30.59 0.31 -2.87 16 20 H 0.06 2.85 6.32 -2.39 -0.02 2.83 16 21 H 0.03 1.22 6.20 -2.39 -0.01 1.20 16 22 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 23 H 0.09 3.05 3.52 -2.39 -0.01 3.04 16 24 H 0.07 3.47 6.03 -2.38 -0.01 3.45 16 25 H 0.28 12.84 8.31 -92.71 -0.77 12.07 16 26 H 0.39 13.40 8.69 -74.05 -0.64 12.75 16 27 H 0.09 3.10 8.07 -2.38 -0.02 3.08 16 28 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.11 2.39 7.83 -2.39 -0.02 2.37 16 30 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -66.97 252.39 3.12 -63.85 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.50 Total: 26.02 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 3.51 Total: -5.32 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -1.49 Total: -67.57 kcal Atomic # 8 Polarization: -59.38 SS G_CDS: -1.43 Total: -60.82 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -66.97 3.12 -63.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596918531.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.382 kcal (2) G-P(sol) polarization free energy of solvation -66.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds