Wall clock time and date at job start Sun Mar 29 2020 21:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47385 * 2 1 4 4 C 1.50702 * 109.46686 * 120.00192 * 2 1 3 5 5 H 1.08007 * 119.99981 * 114.47702 * 4 2 1 6 6 C 1.37872 * 120.00181 * 294.48189 * 4 2 1 7 7 N 1.31507 * 120.00188 * 164.58940 * 6 4 2 8 8 Si 1.86797 * 119.99894 * 344.86064 * 6 4 2 9 9 H 1.48501 * 109.47054 * 269.72685 * 8 6 4 10 10 H 1.48506 * 109.47355 * 29.72399 * 8 6 4 11 11 H 1.48500 * 109.47516 * 149.72369 * 8 6 4 12 12 N 1.46503 * 109.46991 * 239.99842 * 2 1 3 13 13 C 1.34774 * 120.00000 * 85.00701 * 12 2 1 14 14 O 1.21281 * 119.99791 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00282 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.47308 * 304.99976 * 15 13 12 17 17 O 1.42896 * 109.47408 * 184.99709 * 15 13 12 18 18 C 1.53003 * 109.47063 * 64.99694 * 15 13 12 19 19 C 1.53004 * 117.50018 * 248.74992 * 18 15 13 20 20 C 1.53002 * 117.49869 * 180.08727 * 18 15 13 21 21 H 1.08992 * 109.47288 * 173.53991 * 1 2 3 22 22 H 1.08997 * 109.47143 * 293.55201 * 1 2 3 23 23 H 1.09005 * 109.46269 * 53.54439 * 1 2 3 24 24 H 0.97004 * 120.00365 * 355.18112 * 7 6 4 25 25 H 0.97002 * 119.99993 * 265.00302 * 12 2 1 26 26 H 0.96696 * 114.00222 * 300.00577 * 17 15 13 27 27 H 1.09001 * 115.54910 * 34.42171 * 18 15 13 28 28 H 1.09000 * 117.49719 * 359.97438 * 19 18 15 29 29 H 1.09000 * 117.49596 * 145.01936 * 19 18 15 30 30 H 1.08999 * 117.49580 * 214.97701 * 20 18 15 31 31 H 1.08998 * 117.49747 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5776 -1.6377 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9543 -0.9200 3.5529 8 14 1.2419 1.5993 2.6468 9 1 2.4316 2.4785 2.7762 10 1 0.4655 1.9913 1.4430 11 1 0.3884 1.7403 3.8538 12 7 2.0183 -0.6907 -1.1962 13 6 2.1472 -0.0183 -2.3571 14 8 1.8593 1.1586 -2.4114 15 6 2.6500 -0.7285 -3.5874 16 1 3.6103 -1.1962 -3.3701 17 8 2.8087 0.2137 -4.6500 18 6 1.6426 -1.8021 -4.0041 19 6 2.0624 -3.2648 -3.8446 20 6 1.9747 -2.6410 -5.2398 21 1 -0.3633 -1.0211 -0.1156 22 1 -0.3633 0.4106 0.9420 23 1 -0.3632 0.6107 -0.8266 24 1 2.1697 -1.8615 3.4635 25 1 2.2490 -1.6319 -1.1526 26 1 1.9923 0.6691 -4.8970 27 1 0.5951 -1.5572 -3.8287 28 1 3.0565 -3.4622 -3.4433 29 1 1.2910 -3.9821 -3.5647 30 1 1.1455 -2.9483 -5.8771 31 1 2.9106 -2.4277 -5.7562 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596994836.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:42 Heat of formation + Delta-G solvation = -96.799953 kcal Electronic energy + Delta-G solvation = -14461.023500 eV Core-core repulsion = 11934.961257 eV Total energy + Delta-G solvation = -2526.062243 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.12098 -38.65114 -37.03797 -36.15356 -34.47785 -31.88562 -28.62662 -26.86570 -23.36848 -23.10561 -22.14292 -21.31051 -20.03191 -18.60806 -17.82704 -17.12728 -16.34164 -16.00036 -15.37472 -15.11923 -14.82543 -14.51576 -14.34846 -14.03966 -13.48828 -13.35815 -12.86754 -12.50043 -12.35413 -12.09707 -11.82265 -11.56221 -11.48164 -11.19135 -11.13096 -10.58718 -10.46572 -9.95036 -8.80983 -6.47076 1.47226 1.47433 1.59442 1.69071 2.34882 2.41850 2.70548 2.99225 3.40355 3.60983 3.80371 3.97295 4.09279 4.26453 4.47688 4.57660 4.68484 4.75805 4.80769 5.00143 5.05474 5.14485 5.27471 5.40258 5.58264 5.62287 5.99220 6.48184 6.51472 6.79806 7.24010 7.35106 8.57708 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044777 B = 0.008206 C = 0.007457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.173852 B = 3411.305613 C = 3754.046239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.241 3.759 3 H 0.021 0.979 4 C -0.613 4.613 5 H 0.042 0.958 6 C -0.004 4.004 7 N -0.928 5.928 8 Si 1.072 2.928 9 H -0.278 1.278 10 H -0.250 1.250 11 H -0.277 1.277 12 N -0.694 5.694 13 C 0.475 3.525 14 O -0.591 6.591 15 C 0.135 3.865 16 H 0.132 0.868 17 O -0.546 6.546 18 C -0.205 4.205 19 C -0.166 4.166 20 C -0.145 4.145 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.037 0.963 24 H 0.260 0.740 25 H 0.405 0.595 26 H 0.390 0.610 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.568 -3.875 -15.546 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.136 3.864 3 H 0.039 0.961 4 C -0.651 4.651 5 H 0.061 0.939 6 C -0.205 4.205 7 N -0.563 5.563 8 Si 0.894 3.106 9 H -0.204 1.204 10 H -0.174 1.174 11 H -0.203 1.203 12 N -0.343 5.343 13 C 0.261 3.739 14 O -0.473 6.473 15 C 0.073 3.927 16 H 0.149 0.851 17 O -0.352 6.352 18 C -0.224 4.224 19 C -0.203 4.203 20 C -0.182 4.182 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.240 0.760 26 H 0.240 0.760 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.514 -2.090 -14.440 14.669 hybrid contribution 0.032 -1.581 -0.516 1.664 sum -1.482 -3.672 -14.957 15.472 Atomic orbital electron populations 1.22315 0.97458 1.00693 1.00079 1.18812 0.91578 0.93066 0.82955 0.96070 1.22261 1.40125 1.10365 0.92352 0.93932 1.26806 0.93787 1.08188 0.91682 1.70922 1.45732 1.08033 1.31601 0.83749 0.77879 0.71789 0.77223 1.20410 1.17382 1.20291 1.46123 1.64659 1.14216 1.09316 1.22166 0.77730 0.87536 0.86453 1.90634 1.52960 1.17807 1.85866 1.21339 0.99967 0.87959 0.83456 0.85069 1.86508 1.39364 1.57549 1.51750 1.22711 0.99299 0.93006 1.07424 1.23156 1.03834 0.92971 1.00297 1.22965 1.04172 1.00764 0.90323 0.92712 0.92870 0.94424 0.93107 0.75980 0.76025 0.87969 0.87587 0.87422 0.87137 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.41 8.76 71.98 0.63 -5.77 16 2 C 0.24 11.44 2.11 44.25 0.09 11.54 16 3 H 0.02 1.11 6.21 -2.39 -0.01 1.10 16 4 C -0.61 -33.19 9.02 25.60 0.23 -32.95 16 5 H 0.04 2.42 7.96 -2.91 -0.02 2.40 16 6 C 0.00 -0.21 5.33 84.65 0.45 0.24 16 7 N -0.93 -55.80 13.69 21.44 0.29 -55.51 16 8 Si 1.07 50.19 26.17 68.60 1.80 51.98 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.25 -10.89 5.53 99.48 0.55 -10.34 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 N -0.69 -27.24 5.03 -446.10 -2.24 -29.49 16 13 C 0.47 17.66 7.11 87.66 0.62 18.28 16 14 O -0.59 -26.67 15.99 15.96 0.26 -26.42 16 15 C 0.14 3.65 3.57 29.85 0.11 3.76 16 16 H 0.13 3.18 7.90 -2.39 -0.02 3.16 16 17 O -0.55 -15.13 12.90 -129.99 -1.68 -16.80 16 18 C -0.21 -4.39 5.32 -10.79 -0.06 -4.44 16 19 C -0.17 -2.84 10.18 30.62 0.31 -2.53 16 20 C -0.15 -2.36 10.16 30.62 0.31 -2.05 16 21 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 22 H 0.05 2.34 5.06 -2.39 -0.01 2.33 16 23 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 24 H 0.26 15.59 8.73 -92.71 -0.81 14.78 16 25 H 0.41 14.02 8.53 -92.71 -0.79 13.23 16 26 H 0.39 9.30 8.79 -74.06 -0.65 8.65 16 27 H 0.10 2.36 8.11 -2.39 -0.02 2.34 16 28 H 0.11 1.69 8.05 -2.39 -0.02 1.67 16 29 H 0.11 1.68 8.14 -2.39 -0.02 1.67 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -66.98 265.14 0.63 -66.35 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.49 Total: 23.82 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 2.70 Total: -13.94 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -1.95 Total: -84.99 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -1.42 Total: -43.22 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 1.80 Total: 51.98 kcal Total: -66.98 0.63 -66.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596994836.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.449 kcal (2) G-P(sol) polarization free energy of solvation -66.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds