Wall clock time and date at job start Sun Mar 29 2020 21:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46708 * 2 1 4 4 C 1.50697 * 109.47048 * 240.00512 * 2 1 3 5 5 H 1.07999 * 120.00029 * 245.45586 * 4 2 1 6 6 C 1.37878 * 120.00058 * 65.45801 * 4 2 1 7 7 N 1.31511 * 120.00150 * 9.56174 * 6 4 2 8 8 Si 1.86806 * 119.99876 * 189.55795 * 6 4 2 9 9 H 1.48497 * 109.46870 * 84.99621 * 8 6 4 10 10 H 1.48500 * 109.47168 * 204.99279 * 8 6 4 11 11 H 1.48492 * 109.47253 * 324.99220 * 8 6 4 12 12 N 1.46497 * 109.47635 * 120.00424 * 2 1 3 13 13 C 1.34782 * 119.99879 * 275.00680 * 12 2 1 14 14 O 1.21280 * 119.99959 * 359.97438 * 13 12 2 15 15 C 1.50694 * 120.00059 * 179.97438 * 13 12 2 16 16 H 1.09007 * 109.47404 * 54.99333 * 15 13 12 17 17 O 1.42897 * 109.47200 * 174.99517 * 15 13 12 18 18 C 1.53001 * 109.47291 * 294.99586 * 15 13 12 19 19 C 1.52998 * 117.49981 * 248.74902 * 18 15 13 20 20 C 1.52991 * 117.50113 * 180.08418 * 18 15 13 21 21 H 1.09005 * 109.46546 * 183.67469 * 1 2 3 22 22 H 1.08994 * 109.47006 * 303.67362 * 1 2 3 23 23 H 1.09002 * 109.47132 * 63.67588 * 1 2 3 24 24 H 0.97006 * 120.00430 * 179.97438 * 7 6 4 25 25 H 0.96993 * 119.99948 * 94.99519 * 12 2 1 26 26 H 0.96696 * 114.00153 * 60.00187 * 17 15 13 27 27 H 1.09004 * 115.54570 * 34.41294 * 18 15 13 28 28 H 1.09002 * 117.49912 * 359.97438 * 19 18 15 29 29 H 1.09000 * 117.49542 * 145.01705 * 19 18 15 30 30 H 1.09004 * 117.50336 * 214.97699 * 20 18 15 31 31 H 1.09003 * 117.49884 * 0.02562 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5786 -1.6369 -1.1340 6 6 1.7945 -0.1772 -2.4796 7 7 1.2992 1.0358 -2.5935 8 14 2.1759 -1.1778 -4.0103 9 1 1.0239 -2.0607 -4.3242 10 1 2.4226 -0.2611 -5.1522 11 1 3.3844 -2.0069 -3.7712 12 7 2.0185 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8589 1.1584 2.4116 15 6 2.6490 -0.7289 3.5876 16 1 3.6091 -1.1972 3.3706 17 8 2.8079 0.2132 4.6502 18 6 1.6408 -1.8019 4.0039 19 6 0.8676 -1.5780 5.3049 20 6 1.9699 -2.6382 5.2420 21 1 -0.3632 -1.0256 0.0659 22 1 -0.3633 0.5698 0.8552 23 1 -0.3633 0.4557 -0.9211 24 1 1.1323 1.4111 -3.4723 25 1 2.2491 -1.6318 1.1524 26 1 1.9916 0.6691 4.8970 27 1 1.1174 -2.2976 3.1862 28 1 1.0774 -0.6664 5.8646 29 1 -0.1644 -1.9267 5.3434 30 1 1.6627 -3.6840 5.2393 31 1 2.9045 -2.4237 5.7603 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596994837.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:45 Heat of formation + Delta-G solvation = -73.557633 kcal Electronic energy + Delta-G solvation = -14391.986703 eV Core-core repulsion = 11866.932322 eV Total energy + Delta-G solvation = -2525.054381 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.65194 -37.48508 -35.18613 -34.44295 -32.40310 -29.67043 -27.23311 -25.23324 -22.51676 -21.73668 -20.74431 -19.43760 -17.84478 -16.76699 -15.92442 -15.85964 -14.91971 -14.51643 -13.99085 -13.54985 -13.32473 -12.73001 -12.37882 -11.84064 -11.64110 -11.56639 -11.06095 -11.05813 -10.80737 -10.58802 -10.58110 -10.38751 -10.26822 -10.23997 -9.14681 -8.77947 -8.52607 -7.97285 -6.16351 -4.22241 3.23247 3.24685 3.30635 3.32048 3.66877 4.04805 4.35947 4.41588 4.72830 4.86258 4.93388 5.17348 5.28970 5.54704 5.58091 5.70372 5.80390 6.06067 6.08517 6.72158 6.85211 7.04932 7.38707 7.48787 7.62238 7.67417 7.82530 8.04111 8.62245 8.76608 9.06650 9.43838 10.92180 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.050109 B = 0.007138 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.645611 B = 3921.779606 C = 4106.174961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.261 3.739 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.881 5.881 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.704 5.704 13 C 0.477 3.523 14 O -0.549 6.549 15 C 0.119 3.881 16 H 0.122 0.878 17 O -0.541 6.541 18 C -0.188 4.188 19 C -0.175 4.175 20 C -0.167 4.167 21 H 0.028 0.972 22 H 0.019 0.981 23 H 0.073 0.927 24 H 0.265 0.735 25 H 0.389 0.611 26 H 0.380 0.620 27 H 0.116 0.884 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 -7.353 11.222 13.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.159 3.841 3 H 0.073 0.927 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.518 5.518 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.353 5.353 13 C 0.261 3.739 14 O -0.428 6.428 15 C 0.056 3.944 16 H 0.140 0.860 17 O -0.347 6.347 18 C -0.207 4.207 19 C -0.212 4.212 20 C -0.204 4.204 21 H 0.047 0.953 22 H 0.038 0.962 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.221 0.779 26 H 0.230 0.770 27 H 0.134 0.866 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.265 -6.540 11.067 12.857 hybrid contribution -0.364 -0.840 -1.038 1.384 sum -0.099 -7.379 10.029 12.452 Atomic orbital electron populations 1.22004 0.98827 0.98548 1.00516 1.18768 0.90572 0.94618 0.80127 0.92698 1.21173 1.37299 1.08717 0.90450 0.92024 1.24898 0.94934 0.94622 0.99081 1.69984 1.43773 1.13739 1.24284 0.86511 0.78731 0.79938 0.82227 1.20406 1.21131 1.19874 1.46532 1.64674 1.13509 1.10569 1.21175 0.79106 0.88001 0.85601 1.90667 1.51057 1.15943 1.85100 1.21369 0.99154 0.87782 0.86078 0.86015 1.86519 1.38748 1.57208 1.52223 1.23025 1.02578 1.01808 0.93272 1.22956 0.97002 1.01341 0.99879 1.22939 1.00347 0.96399 1.00713 0.95264 0.96226 0.90859 0.92507 0.77865 0.77019 0.86554 0.88183 0.88668 0.88760 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.36 37.16 0.35 -3.07 16 2 C 0.26 6.64 2.42 -69.08 -0.17 6.47 16 3 H 0.06 1.64 7.52 -51.93 -0.39 1.25 16 4 C -0.54 -14.26 8.66 -34.44 -0.30 -14.56 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.85 5.17 -17.82 -0.09 1.76 16 7 N -0.88 -25.16 12.16 55.43 0.67 -24.49 16 8 Si 0.90 20.60 29.55 -169.99 -5.02 15.57 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.70 -14.48 4.96 -54.94 -0.27 -14.75 16 13 C 0.48 9.53 7.12 -10.99 -0.08 9.45 16 14 O -0.55 -13.33 15.99 -14.30 -0.23 -13.56 16 15 C 0.12 1.78 3.74 -27.89 -0.10 1.68 16 16 H 0.12 1.65 8.14 -51.92 -0.42 1.23 16 17 O -0.54 -8.28 12.15 -55.09 -0.67 -8.95 16 18 C -0.19 -2.32 5.67 -90.62 -0.51 -2.83 16 19 C -0.17 -1.88 9.74 -26.69 -0.26 -2.14 16 20 C -0.17 -1.69 10.19 -26.70 -0.27 -1.96 16 21 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.07 1.93 6.83 -51.93 -0.35 1.57 16 24 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.39 6.82 8.53 -40.82 -0.35 6.47 16 26 H 0.38 5.17 7.31 45.56 0.33 5.50 16 27 H 0.12 1.45 8.03 -51.93 -0.42 1.04 16 28 H 0.10 1.04 6.37 -51.93 -0.33 0.70 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 267.69 15.07 4.03 4.03 Total: -1.00 -31.16 267.69 -6.51 -37.66 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -3.59 Total: 9.68 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -1.44 Total: -5.21 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.40 Total: -39.24 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.90 Total: -22.51 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.16 -6.51 -37.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596994837.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.893 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds