Wall clock time and date at job start Sun Mar 29 2020 21:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46708 * 2 1 4 4 C 1.50697 * 109.47048 * 240.00512 * 2 1 3 5 5 H 1.07999 * 120.00029 * 245.45586 * 4 2 1 6 6 C 1.37878 * 120.00058 * 65.45801 * 4 2 1 7 7 N 1.31511 * 120.00150 * 9.56174 * 6 4 2 8 8 Si 1.86806 * 119.99876 * 189.55795 * 6 4 2 9 9 H 1.48497 * 109.46870 * 84.99621 * 8 6 4 10 10 H 1.48500 * 109.47168 * 204.99279 * 8 6 4 11 11 H 1.48492 * 109.47253 * 324.99220 * 8 6 4 12 12 N 1.46497 * 109.47635 * 120.00424 * 2 1 3 13 13 C 1.34782 * 119.99879 * 275.00680 * 12 2 1 14 14 O 1.21280 * 119.99959 * 359.97438 * 13 12 2 15 15 C 1.50694 * 120.00059 * 179.97438 * 13 12 2 16 16 H 1.09007 * 109.47404 * 54.99333 * 15 13 12 17 17 O 1.42897 * 109.47200 * 174.99517 * 15 13 12 18 18 C 1.53001 * 109.47291 * 294.99586 * 15 13 12 19 19 C 1.52998 * 117.49981 * 248.74902 * 18 15 13 20 20 C 1.52991 * 117.50113 * 180.08418 * 18 15 13 21 21 H 1.09005 * 109.46546 * 183.67469 * 1 2 3 22 22 H 1.08994 * 109.47006 * 303.67362 * 1 2 3 23 23 H 1.09002 * 109.47132 * 63.67588 * 1 2 3 24 24 H 0.97006 * 120.00430 * 179.97438 * 7 6 4 25 25 H 0.96993 * 119.99948 * 94.99519 * 12 2 1 26 26 H 0.96696 * 114.00153 * 60.00187 * 17 15 13 27 27 H 1.09004 * 115.54570 * 34.41294 * 18 15 13 28 28 H 1.09002 * 117.49912 * 359.97438 * 19 18 15 29 29 H 1.09000 * 117.49542 * 145.01705 * 19 18 15 30 30 H 1.09004 * 117.50336 * 214.97699 * 20 18 15 31 31 H 1.09003 * 117.49884 * 0.02562 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5786 -1.6369 -1.1340 6 6 1.7945 -0.1772 -2.4796 7 7 1.2992 1.0358 -2.5935 8 14 2.1759 -1.1778 -4.0103 9 1 1.0239 -2.0607 -4.3242 10 1 2.4226 -0.2611 -5.1522 11 1 3.3844 -2.0069 -3.7712 12 7 2.0185 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8589 1.1584 2.4116 15 6 2.6490 -0.7289 3.5876 16 1 3.6091 -1.1972 3.3706 17 8 2.8079 0.2132 4.6502 18 6 1.6408 -1.8019 4.0039 19 6 0.8676 -1.5780 5.3049 20 6 1.9699 -2.6382 5.2420 21 1 -0.3632 -1.0256 0.0659 22 1 -0.3633 0.5698 0.8552 23 1 -0.3633 0.4557 -0.9211 24 1 1.1323 1.4111 -3.4723 25 1 2.2491 -1.6318 1.1524 26 1 1.9916 0.6691 4.8970 27 1 1.1174 -2.2976 3.1862 28 1 1.0774 -0.6664 5.8646 29 1 -0.1644 -1.9267 5.3434 30 1 1.6627 -3.6840 5.2393 31 1 2.9045 -2.4237 5.7603 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596994837.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:45 Heat of formation + Delta-G solvation = -96.159237 kcal Electronic energy + Delta-G solvation = -14392.966782 eV Core-core repulsion = 11866.932322 eV Total energy + Delta-G solvation = -2526.034460 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.10375 -38.79629 -36.80452 -35.81845 -34.34199 -31.48072 -28.65009 -27.30806 -23.52339 -23.18742 -22.09408 -21.05286 -19.46386 -17.98780 -17.64072 -17.42278 -16.61150 -15.86881 -15.57115 -15.11135 -14.74224 -14.37697 -13.86046 -13.78130 -13.06722 -12.96746 -12.80961 -12.70226 -12.38532 -12.34890 -12.16884 -11.77420 -11.47315 -11.20196 -11.15596 -10.59737 -10.31515 -9.80799 -8.22245 -6.36343 1.44447 1.45533 1.55377 1.68801 2.31007 2.51468 2.90149 3.10100 3.25332 3.68396 3.87679 4.00651 4.22874 4.36208 4.57168 4.70332 4.81804 4.85572 5.00567 5.02230 5.19382 5.30651 5.38859 5.57450 5.60172 5.85650 6.00815 6.47702 6.72303 6.91774 7.29860 7.49163 8.87120 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.050109 B = 0.007138 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.645611 B = 3921.779606 C = 4106.174961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.266 3.734 3 H -0.001 1.001 4 C -0.550 4.550 5 H 0.076 0.924 6 C 0.015 3.985 7 N -0.921 5.921 8 Si 0.971 3.029 9 H -0.269 1.269 10 H -0.288 1.288 11 H -0.262 1.262 12 N -0.697 5.697 13 C 0.472 3.528 14 O -0.599 6.599 15 C 0.134 3.866 16 H 0.141 0.859 17 O -0.548 6.548 18 C -0.204 4.204 19 C -0.178 4.178 20 C -0.145 4.145 21 H 0.050 0.950 22 H 0.015 0.985 23 H 0.048 0.952 24 H 0.266 0.734 25 H 0.407 0.593 26 H 0.386 0.614 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 -9.826 11.853 15.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.162 3.838 3 H 0.017 0.983 4 C -0.588 4.588 5 H 0.094 0.906 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.795 3.205 9 H -0.194 1.194 10 H -0.214 1.214 11 H -0.186 1.186 12 N -0.347 5.347 13 C 0.259 3.741 14 O -0.481 6.481 15 C 0.072 3.928 16 H 0.158 0.842 17 O -0.354 6.354 18 C -0.223 4.223 19 C -0.214 4.214 20 C -0.181 4.181 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.242 0.758 26 H 0.237 0.763 27 H 0.134 0.866 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.132 0.868 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.666 -9.058 11.729 14.834 hybrid contribution -0.478 -0.019 -1.171 1.265 sum 0.188 -9.078 10.558 13.925 Atomic orbital electron populations 1.21816 0.98178 0.99465 0.99038 1.18374 0.91062 0.92229 0.82092 0.98290 1.21537 1.37278 1.09110 0.90896 0.90590 1.25835 0.94700 0.95463 1.02517 1.70138 1.45090 1.15590 1.25025 0.85375 0.79072 0.78265 0.77754 1.19391 1.21430 1.18634 1.46270 1.64608 1.14231 1.09605 1.22203 0.77720 0.87520 0.86657 1.90641 1.53088 1.18366 1.85963 1.21332 1.00536 0.87697 0.83277 0.84156 1.86504 1.39515 1.57594 1.51816 1.22889 1.03050 1.02048 0.94299 1.23096 0.97899 1.01970 0.98483 1.23026 1.00121 0.97094 0.97895 0.93068 0.96551 0.93303 0.92527 0.75791 0.76291 0.86601 0.88026 0.87668 0.86802 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.24 9.36 71.98 0.67 -5.57 16 2 C 0.27 13.81 2.42 44.25 0.11 13.91 16 3 H 0.00 -0.05 7.52 -2.39 -0.02 -0.07 16 4 C -0.55 -29.05 8.66 25.60 0.22 -28.83 16 5 H 0.08 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.02 0.82 5.17 84.66 0.44 1.26 16 7 N -0.92 -53.78 12.16 21.45 0.26 -53.52 16 8 Si 0.97 41.80 29.55 68.60 2.03 43.83 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 10 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 12 N -0.70 -28.49 4.96 -446.10 -2.21 -30.70 16 13 C 0.47 18.85 7.12 87.65 0.62 19.48 16 14 O -0.60 -29.90 15.99 15.96 0.26 -29.65 16 15 C 0.13 3.79 3.74 29.85 0.11 3.90 16 16 H 0.14 3.45 8.14 -2.38 -0.02 3.43 16 17 O -0.55 -16.01 12.15 -129.99 -1.58 -17.59 16 18 C -0.20 -4.52 5.67 -10.80 -0.06 -4.58 16 19 C -0.18 -3.36 9.74 30.62 0.30 -3.06 16 20 C -0.14 -2.41 10.19 30.62 0.31 -2.10 16 21 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 22 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.05 2.63 6.83 -2.39 -0.02 2.61 16 24 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 25 H 0.41 13.65 8.53 -92.71 -0.79 12.86 16 26 H 0.39 10.20 7.31 -74.06 -0.54 9.66 16 27 H 0.12 2.61 8.03 -2.39 -0.02 2.59 16 28 H 0.10 1.89 6.37 -2.39 -0.02 1.87 16 29 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -68.26 267.69 1.29 -66.97 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -0.19 Total: 26.25 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 2.72 Total: -5.60 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.95 Total: -84.22 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -1.32 Total: -47.24 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -68.26 1.29 -66.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596994837.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.188 kcal (2) G-P(sol) polarization free energy of solvation -68.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds