Wall clock time and date at job start Sun Mar 29 2020 21:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47355 * 2 1 4 4 C 1.50704 * 109.47086 * 119.99754 * 2 1 3 5 5 H 1.07992 * 120.00120 * 116.68964 * 4 2 1 6 6 C 1.37875 * 119.99522 * 296.68843 * 4 2 1 7 7 N 1.31513 * 120.00501 * 352.38401 * 6 4 2 8 8 Si 1.86806 * 119.99715 * 172.66612 * 6 4 2 9 9 H 1.48497 * 109.47165 * 264.79730 * 8 6 4 10 10 H 1.48503 * 109.46939 * 24.79275 * 8 6 4 11 11 H 1.48498 * 109.47436 * 144.79640 * 8 6 4 12 12 N 1.46497 * 109.47488 * 239.99998 * 2 1 3 13 13 C 1.34780 * 120.00312 * 84.99823 * 12 2 1 14 14 O 1.21279 * 119.99812 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99852 * 180.02562 * 13 12 2 16 16 H 1.08995 * 109.47021 * 54.99874 * 15 13 12 17 17 O 1.42899 * 109.46610 * 174.99929 * 15 13 12 18 18 C 1.52994 * 109.47040 * 294.99621 * 15 13 12 19 19 C 1.52999 * 117.50281 * 248.74921 * 18 15 13 20 20 C 1.53002 * 117.49823 * 180.08745 * 18 15 13 21 21 H 1.09001 * 109.47267 * 177.81203 * 1 2 3 22 22 H 1.08995 * 109.47232 * 297.82001 * 1 2 3 23 23 H 1.09001 * 109.47019 * 57.81936 * 1 2 3 24 24 H 0.96997 * 120.00137 * 180.27656 * 7 6 4 25 25 H 0.97006 * 119.99727 * 264.99964 * 12 2 1 26 26 H 0.96701 * 114.00460 * 60.00354 * 17 15 13 27 27 H 1.09007 * 115.55004 * 34.42389 * 18 15 13 28 28 H 1.09003 * 117.49511 * 0.02562 * 19 18 15 29 29 H 1.08998 * 117.50068 * 145.02463 * 19 18 15 30 30 H 1.09003 * 117.50245 * 214.98087 * 20 18 15 31 31 H 1.09003 * 117.49591 * 0.02562 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6083 -1.6185 1.1324 6 6 1.7564 -0.2007 2.4815 7 7 1.1871 0.9789 2.6002 8 14 2.1985 -1.1822 4.0082 9 1 1.0150 -1.9586 4.4575 10 1 3.3110 -2.1140 3.6927 11 1 2.6209 -0.2546 5.0881 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6490 -0.7289 -3.5877 16 1 2.0276 -1.6032 -3.7811 17 8 2.5873 0.1566 -4.7075 18 6 4.0969 -1.1711 -3.3664 19 6 5.1828 -0.4698 -4.1848 20 6 4.7914 -1.9136 -4.5097 21 1 -0.3634 -1.0269 -0.0392 22 1 -0.3633 0.4796 0.9088 23 1 -0.3633 0.5473 -0.8698 24 1 0.9967 1.3391 3.4805 25 1 2.2491 -1.6318 -1.1525 26 1 3.1180 0.9584 -4.6047 27 1 4.3473 -1.4681 -2.3479 28 1 4.8657 0.3070 -4.8807 29 1 6.1476 -0.3058 -3.7050 30 1 5.4991 -2.6988 -4.2435 31 1 4.2169 -2.0866 -5.4198 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596994838.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:48 Heat of formation + Delta-G solvation = -73.411711 kcal Electronic energy + Delta-G solvation = -14390.122927 eV Core-core repulsion = 11865.074874 eV Total energy + Delta-G solvation = -2525.048053 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.64320 -37.47547 -35.17541 -34.44351 -32.41091 -29.64519 -27.20464 -25.24366 -22.48719 -21.76379 -20.65717 -19.47249 -17.85088 -16.74325 -15.91823 -15.79309 -14.94885 -14.56516 -14.01870 -13.65049 -13.05239 -12.74545 -12.40376 -11.95549 -11.55518 -11.52572 -11.08582 -11.00784 -10.81091 -10.57942 -10.53027 -10.35990 -10.29438 -10.20885 -9.12450 -8.78348 -8.53810 -7.96919 -6.16328 -4.23106 3.22375 3.23931 3.30143 3.31839 3.69524 4.05348 4.34977 4.42485 4.74822 4.88764 4.95979 5.17311 5.32027 5.55000 5.60308 5.70200 5.83519 6.09064 6.12200 6.75815 6.89632 7.08009 7.40406 7.49727 7.62232 7.67747 7.84774 8.05508 8.62010 8.75675 9.06493 9.43392 10.91838 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041630 B = 0.007670 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.422580 B = 3649.746958 C = 4070.957564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.262 3.738 3 H 0.053 0.947 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.704 5.704 13 C 0.477 3.523 14 O -0.549 6.549 15 C 0.120 3.880 16 H 0.121 0.879 17 O -0.542 6.542 18 C -0.189 4.189 19 C -0.175 4.175 20 C -0.167 4.167 21 H 0.028 0.972 22 H 0.077 0.923 23 H 0.018 0.982 24 H 0.265 0.735 25 H 0.389 0.611 26 H 0.381 0.619 27 H 0.118 0.882 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.501 -5.880 -9.811 12.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.160 3.840 3 H 0.071 0.929 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.353 5.353 13 C 0.261 3.739 14 O -0.428 6.428 15 C 0.057 3.943 16 H 0.139 0.861 17 O -0.348 6.348 18 C -0.207 4.207 19 C -0.211 4.211 20 C -0.204 4.204 21 H 0.048 0.952 22 H 0.096 0.904 23 H 0.037 0.963 24 H 0.075 0.925 25 H 0.221 0.779 26 H 0.231 0.769 27 H 0.136 0.864 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.826 -5.334 -9.917 12.251 hybrid contribution 0.646 -0.577 1.289 1.553 sum 5.472 -5.910 -8.629 11.804 Atomic orbital electron populations 1.22021 0.98735 0.98808 1.00655 1.18761 0.90737 0.94391 0.80092 0.92936 1.21193 1.35490 1.10418 0.90332 0.92031 1.24898 0.94946 0.94706 0.99062 1.69969 1.42011 1.15834 1.24062 0.86474 0.78659 0.79825 0.82383 1.20522 1.19819 1.21094 1.46539 1.64675 1.13592 1.10493 1.21182 0.79157 0.88093 0.85472 1.90666 1.51267 1.16016 1.84839 1.21360 0.94333 0.92854 0.85776 0.86105 1.86509 1.73885 1.35360 1.39029 1.23040 0.93230 1.06375 0.98101 1.22953 0.98901 0.96073 1.03210 1.22938 1.03173 0.94957 0.99372 0.95246 0.90391 0.96265 0.92543 0.77854 0.76947 0.86390 0.88210 0.88620 0.88761 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.32 37.16 0.35 -3.22 16 2 C 0.26 6.67 2.45 -69.08 -0.17 6.50 16 3 H 0.05 1.56 7.57 -51.93 -0.39 1.17 16 4 C -0.54 -14.13 8.69 -34.44 -0.30 -14.43 16 5 H 0.06 1.54 7.73 -52.49 -0.41 1.14 16 6 C 0.07 1.82 5.21 -17.82 -0.09 1.73 16 7 N -0.88 -25.06 11.92 55.43 0.66 -24.40 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.70 -14.48 4.96 -54.93 -0.27 -14.76 16 13 C 0.48 9.53 7.12 -10.98 -0.08 9.45 16 14 O -0.55 -13.33 15.99 -14.30 -0.23 -13.56 16 15 C 0.12 1.79 3.74 -27.88 -0.10 1.69 16 16 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 17 O -0.54 -8.28 12.15 -55.09 -0.67 -8.95 16 18 C -0.19 -2.40 5.67 -90.62 -0.51 -2.91 16 19 C -0.17 -1.95 9.74 -26.69 -0.26 -2.21 16 20 C -0.17 -1.74 10.19 -26.69 -0.27 -2.01 16 21 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.08 2.09 6.60 -51.93 -0.34 1.74 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.39 6.83 8.53 -40.82 -0.35 6.48 16 26 H 0.38 5.22 7.31 45.56 0.33 5.56 16 27 H 0.12 1.56 8.03 -51.93 -0.42 1.14 16 28 H 0.10 1.06 6.37 -51.93 -0.33 0.73 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 267.31 15.07 4.03 4.03 Total: -1.00 -30.99 267.31 -6.52 -37.52 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -3.58 Total: 10.03 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -1.44 Total: -5.43 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.39 Total: -39.15 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.90 Total: -22.50 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.99 -6.52 -37.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596994838.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.894 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds