Wall clock time and date at job start Sun Mar 29 2020 21:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47163 * 2 1 4 4 C 1.50694 * 109.47377 * 240.00194 * 2 1 3 5 5 H 1.08001 * 120.00269 * 239.99999 * 4 2 1 6 6 C 1.37878 * 120.00156 * 59.99984 * 4 2 1 7 7 N 1.31516 * 120.00022 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00111 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47093 * 60.00576 * 8 6 4 10 10 H 1.48508 * 109.47170 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47418 * 300.00002 * 8 6 4 12 12 C 1.50699 * 109.47005 * 120.00020 * 2 1 3 13 13 O 1.21284 * 119.99989 * 26.28434 * 12 2 1 14 14 N 1.34775 * 119.99992 * 206.00915 * 12 2 1 15 15 C 1.47016 * 125.64934 * 5.48212 * 14 12 2 16 16 C 1.54329 * 107.27363 * 181.02417 * 15 14 12 17 17 C 1.55165 * 102.93818 * 22.19660 * 16 15 14 18 18 H 1.08996 * 111.00530 * 82.60897 * 17 16 15 19 19 O 1.42904 * 111.00012 * 206.42345 * 17 16 15 20 20 C 1.47428 * 125.64826 * 185.17923 * 14 12 2 21 21 H 1.09005 * 109.46593 * 63.61710 * 1 2 3 22 22 H 1.08997 * 109.47127 * 183.61379 * 1 2 3 23 23 H 1.08993 * 109.47093 * 303.61870 * 1 2 3 24 24 H 0.96995 * 119.99995 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.88742 * 300.44074 * 15 14 12 26 26 H 1.09001 * 109.88272 * 61.60775 * 15 14 12 27 27 H 1.08997 * 110.71842 * 140.55610 * 16 15 14 28 28 H 1.08995 * 110.71931 * 263.65655 * 16 15 14 29 29 H 0.96700 * 114.00221 * 298.54703 * 19 17 16 30 30 H 1.08993 * 110.36604 * 274.74477 * 20 14 12 31 31 H 1.09003 * 110.36470 * 37.06828 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6994 -0.2393 -2.4827 7 7 0.9437 0.8303 -2.6034 8 14 2.3227 -1.1194 -4.0079 9 1 1.8282 -2.5196 -4.0083 10 1 1.8271 -0.4197 -5.2205 11 1 3.8076 -1.1188 -4.0077 12 6 2.0323 -0.7104 1.2305 13 8 1.3466 -1.5560 1.7649 14 7 3.2459 -0.4100 1.7338 15 6 4.1309 0.6618 1.2548 16 6 5.4145 0.6128 2.1100 17 6 5.4186 -0.8428 2.6474 18 1 5.8349 -1.5300 1.9109 19 8 6.1289 -0.9301 3.8844 20 6 3.9033 -1.0978 2.8600 21 1 -0.3633 0.4567 -0.9207 22 1 -0.3633 -1.0256 0.0648 23 1 -0.3633 0.5689 0.8557 24 1 0.7097 1.1619 -3.4844 25 1 4.3778 0.4977 0.2059 26 1 3.6416 1.6283 1.3757 27 1 6.2949 0.7993 1.4951 28 1 5.3594 1.3292 2.9296 29 1 7.0611 -0.6810 3.8211 30 1 3.5741 -0.6728 3.8082 31 1 3.6907 -2.1664 2.8281 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597333344.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:51 Heat of formation + Delta-G solvation = -91.044673 kcal Electronic energy + Delta-G solvation = -14638.923926 eV Core-core repulsion = 12113.111251 eV Total energy + Delta-G solvation = -2525.812675 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.46387 -37.53526 -35.24261 -33.78848 -30.66699 -30.01967 -28.28034 -25.20988 -23.62751 -21.70143 -20.81925 -18.50385 -17.42949 -16.65689 -16.19100 -15.05245 -14.83607 -14.34915 -13.84434 -13.75119 -13.47159 -12.70440 -12.33947 -11.93391 -11.69307 -11.53606 -11.27604 -11.00210 -10.86617 -10.66335 -10.47663 -10.26833 -10.15007 -9.96583 -9.06846 -8.68201 -8.39453 -8.01294 -6.12338 -4.20760 3.25751 3.30871 3.32831 3.51851 3.72601 4.23876 4.37930 4.70852 4.78737 5.07706 5.18822 5.43833 5.59285 5.76510 5.87764 6.07587 6.15017 6.21424 6.31637 6.79827 6.91714 7.02614 7.14248 7.53225 7.56040 7.74617 7.94464 8.17744 8.31415 8.78976 9.17682 9.44438 10.93511 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034946 B = 0.009180 C = 0.008173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.047359 B = 3049.221617 C = 3425.193909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.036 3.964 3 H 0.045 0.955 4 C -0.509 4.509 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.544 3.456 13 O -0.561 6.561 14 N -0.625 5.625 15 C 0.110 3.890 16 C -0.165 4.165 17 C 0.089 3.911 18 H 0.075 0.925 19 O -0.561 6.561 20 C 0.115 3.885 21 H 0.089 0.911 22 H 0.038 0.962 23 H 0.010 0.990 24 H 0.264 0.736 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.379 0.621 30 H 0.067 0.933 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.033 1.499 6.262 11.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.015 3.985 3 H 0.063 0.937 4 C -0.547 4.547 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.337 3.663 13 O -0.439 6.439 14 N -0.362 5.362 15 C -0.014 4.014 16 C -0.204 4.204 17 C 0.029 3.971 18 H 0.093 0.907 19 O -0.366 6.366 20 C -0.009 4.009 21 H 0.108 0.892 22 H 0.058 0.942 23 H 0.029 0.971 24 H 0.074 0.926 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.226 0.774 30 H 0.085 0.915 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.891 0.957 6.575 11.100 hybrid contribution 0.974 -0.171 -1.080 1.464 sum 9.865 0.786 5.496 11.320 Atomic orbital electron populations 1.21640 0.96087 0.99999 1.00747 1.18868 0.94656 0.96250 0.88679 0.93698 1.20697 1.32138 1.12641 0.89255 0.92512 1.24908 0.94806 0.94922 0.98947 1.69871 1.35973 1.22577 1.23892 0.86533 0.79113 0.79893 0.81773 1.20088 1.21078 1.20164 1.21808 0.77720 0.82183 0.84609 1.90544 1.56111 1.35116 1.62142 1.48548 1.18573 1.34999 1.34100 1.21859 0.89063 0.91295 0.99151 1.23378 0.98612 0.97819 1.00548 1.23023 0.92910 0.95600 0.85574 0.90727 1.86460 1.26617 1.91196 1.32306 1.21856 0.89293 0.98718 0.91027 0.89217 0.94239 0.97108 0.92586 0.89971 0.91493 0.90076 0.90094 0.77368 0.91480 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.64 37.16 0.32 -2.94 16 2 C 0.04 0.93 2.21 -92.93 -0.20 0.73 16 3 H 0.05 1.15 7.28 -51.93 -0.38 0.77 16 4 C -0.51 -13.84 8.55 -34.44 -0.29 -14.14 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.38 11.30 55.43 0.63 -23.76 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 C 0.54 13.23 6.87 -10.99 -0.08 13.16 16 13 O -0.56 -15.13 16.33 5.55 0.09 -15.04 16 14 N -0.62 -12.42 3.32 -170.39 -0.57 -12.99 16 15 C 0.11 1.78 6.08 -3.06 -0.02 1.76 16 16 C -0.17 -1.98 6.68 -24.89 -0.17 -2.15 16 17 C 0.09 1.16 4.45 -24.46 -0.11 1.05 16 18 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 19 O -0.56 -6.56 13.47 -35.23 -0.47 -7.04 16 20 C 0.11 1.96 6.63 -2.41 -0.02 1.94 16 21 H 0.09 2.42 5.98 -51.93 -0.31 2.11 16 22 H 0.04 1.04 7.73 -51.93 -0.40 0.64 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 24 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 26 H 0.07 1.06 8.01 -51.93 -0.42 0.64 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.38 2.54 9.11 45.56 0.42 2.96 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.08 1.39 8.09 -51.93 -0.42 0.97 16 LS Contribution 261.78 15.07 3.94 3.94 Total: -1.00 -31.57 261.78 -5.65 -37.21 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -3.59 Total: 0.79 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -0.66 Total: 1.11 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.06 Total: -36.74 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.38 Total: -22.08 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.57 -5.65 -37.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597333344.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.833 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds