Wall clock time and date at job start Sun Mar 29 2020 21:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47163 * 2 1 4 4 C 1.50694 * 109.47377 * 240.00194 * 2 1 3 5 5 H 1.08001 * 120.00269 * 239.99999 * 4 2 1 6 6 C 1.37878 * 120.00156 * 59.99984 * 4 2 1 7 7 N 1.31516 * 120.00022 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00111 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47093 * 60.00576 * 8 6 4 10 10 H 1.48508 * 109.47170 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47418 * 300.00002 * 8 6 4 12 12 C 1.50699 * 109.47005 * 120.00020 * 2 1 3 13 13 O 1.21284 * 119.99989 * 26.28434 * 12 2 1 14 14 N 1.34775 * 119.99992 * 206.00915 * 12 2 1 15 15 C 1.47016 * 125.64934 * 5.48212 * 14 12 2 16 16 C 1.54329 * 107.27363 * 181.02417 * 15 14 12 17 17 C 1.55165 * 102.93818 * 22.19660 * 16 15 14 18 18 H 1.08996 * 111.00530 * 82.60897 * 17 16 15 19 19 O 1.42904 * 111.00012 * 206.42345 * 17 16 15 20 20 C 1.47428 * 125.64826 * 185.17923 * 14 12 2 21 21 H 1.09005 * 109.46593 * 63.61710 * 1 2 3 22 22 H 1.08997 * 109.47127 * 183.61379 * 1 2 3 23 23 H 1.08993 * 109.47093 * 303.61870 * 1 2 3 24 24 H 0.96995 * 119.99995 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.88742 * 300.44074 * 15 14 12 26 26 H 1.09001 * 109.88272 * 61.60775 * 15 14 12 27 27 H 1.08997 * 110.71842 * 140.55610 * 16 15 14 28 28 H 1.08995 * 110.71931 * 263.65655 * 16 15 14 29 29 H 0.96700 * 114.00221 * 298.54703 * 19 17 16 30 30 H 1.08993 * 110.36604 * 274.74477 * 20 14 12 31 31 H 1.09003 * 110.36470 * 37.06828 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6994 -0.2393 -2.4827 7 7 0.9437 0.8303 -2.6034 8 14 2.3227 -1.1194 -4.0079 9 1 1.8282 -2.5196 -4.0083 10 1 1.8271 -0.4197 -5.2205 11 1 3.8076 -1.1188 -4.0077 12 6 2.0323 -0.7104 1.2305 13 8 1.3466 -1.5560 1.7649 14 7 3.2459 -0.4100 1.7338 15 6 4.1309 0.6618 1.2548 16 6 5.4145 0.6128 2.1100 17 6 5.4186 -0.8428 2.6474 18 1 5.8349 -1.5300 1.9109 19 8 6.1289 -0.9301 3.8844 20 6 3.9033 -1.0978 2.8600 21 1 -0.3633 0.4567 -0.9207 22 1 -0.3633 -1.0256 0.0648 23 1 -0.3633 0.5689 0.8557 24 1 0.7097 1.1619 -3.4844 25 1 4.3778 0.4977 0.2059 26 1 3.6416 1.6283 1.3757 27 1 6.2949 0.7993 1.4951 28 1 5.3594 1.3292 2.9296 29 1 7.0611 -0.6810 3.8211 30 1 3.5741 -0.6728 3.8082 31 1 3.6907 -2.1664 2.8281 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597333344.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:51 Heat of formation + Delta-G solvation = -114.749262 kcal Electronic energy + Delta-G solvation = -14639.951834 eV Core-core repulsion = 12113.111251 eV Total energy + Delta-G solvation = -2526.840584 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.04239 -38.98160 -36.49281 -35.84134 -32.58806 -31.47350 -29.63251 -27.30909 -25.26877 -23.28445 -22.06376 -20.15257 -18.62769 -18.49917 -18.02308 -16.78015 -16.35297 -15.96903 -15.30539 -15.13250 -14.78174 -14.37831 -13.97693 -13.57250 -13.50521 -12.91547 -12.87918 -12.77970 -12.58036 -12.47519 -12.21803 -12.14492 -11.67918 -11.15849 -10.95100 -10.66432 -10.41483 -9.62191 -8.18216 -6.34360 1.41981 1.45225 1.52044 1.79467 2.06774 2.43378 3.10409 3.20088 3.58050 3.64698 4.04993 4.17364 4.31399 4.50994 4.64902 4.71210 4.80303 4.85160 4.94954 4.98275 5.05924 5.16973 5.38031 5.49614 5.66852 5.83064 6.12269 6.55136 6.68106 6.89134 7.28533 7.37477 8.87276 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034946 B = 0.009180 C = 0.008173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.047359 B = 3049.221617 C = 3425.193909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.035 3.965 3 H 0.041 0.959 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.026 3.974 7 N -0.907 5.907 8 Si 0.961 3.039 9 H -0.280 1.280 10 H -0.277 1.277 11 H -0.263 1.263 12 C 0.538 3.462 13 O -0.600 6.600 14 N -0.623 5.623 15 C 0.099 3.901 16 C -0.146 4.146 17 C 0.105 3.895 18 H 0.083 0.917 19 O -0.568 6.568 20 C 0.104 3.896 21 H 0.076 0.924 22 H 0.022 0.978 23 H 0.023 0.977 24 H 0.268 0.732 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.404 0.596 30 H 0.068 0.932 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.274 1.927 6.154 13.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.014 3.986 3 H 0.059 0.941 4 C -0.566 4.566 5 H 0.064 0.936 6 C -0.174 4.174 7 N -0.545 5.545 8 Si 0.786 3.214 9 H -0.205 1.205 10 H -0.202 1.202 11 H -0.188 1.188 12 C 0.330 3.670 13 O -0.481 6.481 14 N -0.358 5.358 15 C -0.023 4.023 16 C -0.183 4.183 17 C 0.045 3.955 18 H 0.101 0.899 19 O -0.377 6.377 20 C -0.019 4.019 21 H 0.094 0.906 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.133 0.867 28 H 0.114 0.886 29 H 0.256 0.744 30 H 0.086 0.914 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.203 1.419 6.485 13.023 hybrid contribution 0.295 -0.269 -0.985 1.062 sum 11.498 1.150 5.501 12.798 Atomic orbital electron populations 1.21515 0.96677 0.98922 1.00558 1.18783 0.94340 0.96081 0.89362 0.94067 1.20817 1.32716 1.12681 0.90362 0.93587 1.25636 0.94750 0.95505 1.01542 1.69959 1.36331 1.23423 1.24776 0.85561 0.79224 0.78333 0.78276 1.20529 1.20198 1.18780 1.21476 0.79153 0.81881 0.84458 1.90510 1.57720 1.36700 1.63181 1.48461 1.17600 1.35519 1.34182 1.22137 0.90562 0.90129 0.99500 1.23340 0.97174 0.97277 1.00559 1.22723 0.90083 0.96459 0.86245 0.89926 1.86412 1.28652 1.91383 1.31289 1.22046 0.92479 0.97432 0.89927 0.90559 0.95854 0.95766 0.92241 0.91206 0.91260 0.86672 0.88601 0.74419 0.91361 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.26 8.64 71.98 0.62 -5.64 16 2 C 0.04 1.85 2.21 -12.29 -0.03 1.82 16 3 H 0.04 2.15 7.28 -2.38 -0.02 2.14 16 4 C -0.53 -29.02 8.55 25.60 0.22 -28.80 16 5 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 6 C 0.03 1.40 5.30 84.65 0.45 1.85 16 7 N -0.91 -49.95 11.30 21.45 0.24 -49.70 16 8 Si 0.96 42.15 29.54 68.60 2.03 44.18 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 10 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 12 C 0.54 26.69 6.87 87.66 0.60 27.29 16 13 O -0.60 -33.26 16.33 -3.04 -0.05 -33.31 16 14 N -0.62 -24.63 3.32 -811.37 -2.70 -27.32 16 15 C 0.10 3.07 6.08 86.73 0.53 3.60 16 16 C -0.15 -2.95 6.68 31.79 0.21 -2.74 16 17 C 0.10 2.44 4.45 32.07 0.14 2.58 16 18 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 19 O -0.57 -11.26 13.47 -148.98 -2.01 -13.27 16 20 C 0.10 3.47 6.63 86.93 0.58 4.05 16 21 H 0.08 4.20 5.98 -2.38 -0.01 4.19 16 22 H 0.02 1.24 7.73 -2.39 -0.02 1.23 16 23 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 25 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.07 2.11 8.01 -2.39 -0.02 2.09 16 27 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.40 3.61 9.11 -74.06 -0.68 2.94 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.06 2.18 8.09 -2.39 -0.02 2.16 16 Total: -1.00 -68.31 261.78 1.28 -67.03 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.45 Total: 8.38 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 3.32 Total: 4.02 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -2.46 Total: -77.03 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -2.06 Total: -46.58 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -68.31 1.28 -67.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597333344.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.721 kcal (2) G-P(sol) polarization free energy of solvation -68.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds