Wall clock time and date at job start Sun Mar 29 2020 21:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47476 * 2 1 4 4 N 1.46502 * 109.47040 * 120.00336 * 2 1 3 5 5 C 1.34783 * 119.99671 * 273.20131 * 4 2 1 6 6 O 1.21685 * 120.00114 * 359.97438 * 5 4 2 7 7 C 1.46374 * 119.99763 * 180.02562 * 5 4 2 8 8 H 1.08002 * 120.00119 * 359.97438 * 7 5 4 9 9 C 1.40047 * 119.99958 * 179.97438 * 7 5 4 10 10 N 1.30676 * 120.00041 * 359.97438 * 9 7 5 11 11 Si 1.86794 * 119.99978 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47459 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47309 * 120.00081 * 11 9 7 14 14 H 1.48505 * 109.47473 * 239.99986 * 11 9 7 15 15 C 1.52998 * 109.47142 * 239.99988 * 2 1 3 16 16 C 1.53005 * 115.54968 * 65.28530 * 15 2 1 17 17 O 1.42900 * 109.47016 * 39.57166 * 16 15 2 18 18 C 1.52993 * 117.52089 * 210.98842 * 15 2 1 19 19 C 1.52998 * 60.00279 * 107.48257 * 18 15 2 20 20 H 1.08997 * 109.46969 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46902 * 299.99962 * 1 2 3 22 22 H 1.09000 * 109.46694 * 59.99637 * 1 2 3 23 23 H 0.96994 * 120.00190 * 93.20318 * 4 2 1 24 24 H 0.96991 * 119.99951 * 180.02562 * 10 9 7 25 25 H 1.08994 * 109.47286 * 279.57396 * 16 15 2 26 26 H 1.09003 * 109.46939 * 159.57125 * 16 15 2 27 27 H 0.96693 * 114.00159 * 179.97438 * 17 16 15 28 28 H 1.08997 * 117.50107 * 214.96950 * 18 15 2 29 29 H 1.08998 * 117.49807 * 359.97438 * 18 15 2 30 30 H 1.09005 * 117.50011 * 252.51642 * 19 18 15 31 31 H 1.08996 * 117.52193 * 107.48068 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1815 -0.0099 2.3479 6 8 1.9237 1.1784 2.3941 7 6 2.6699 -0.6999 3.5429 8 1 2.8992 -1.7545 3.5018 9 6 2.8400 0.0075 4.7396 10 7 2.5631 1.2836 4.7892 11 14 3.4626 -0.8731 6.2647 12 1 3.7002 -2.3043 5.9477 13 1 4.7324 -0.2477 6.7137 14 1 2.4497 -0.7676 7.3455 15 6 2.0400 -0.7212 -1.2492 16 6 1.7159 -0.0425 -2.5816 17 8 1.8611 1.3723 -2.4432 18 6 3.3723 -1.4656 -1.1414 19 6 2.0617 -2.2509 -1.2225 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 2.2243 -1.6378 1.1592 24 1 2.6812 1.7736 5.6179 25 1 0.6906 -0.2761 -2.8684 26 1 2.3995 -0.4046 -3.3496 27 1 1.6712 1.8681 -3.2514 28 1 4.0179 -1.4719 -2.0196 29 1 3.8860 -1.4413 -0.1803 30 1 1.7130 -2.7433 -0.3147 31 1 1.8447 -2.7736 -2.1540 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598037419.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:14 Heat of formation + Delta-G solvation = -68.255445 kcal Electronic energy + Delta-G solvation = -14574.900453 eV Core-core repulsion = 12050.075993 eV Total energy + Delta-G solvation = -2524.824460 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.10706 -36.76416 -35.62071 -32.89274 -32.05337 -29.60026 -26.65561 -25.91251 -23.06335 -22.08081 -19.80574 -18.33708 -17.44380 -17.05185 -15.52096 -15.15905 -14.79656 -14.13776 -13.88639 -13.18800 -12.99542 -12.74738 -12.23427 -11.98206 -11.49283 -11.30919 -11.20370 -10.93899 -10.81786 -10.54430 -10.36985 -10.20288 -10.10838 -9.71113 -9.32743 -8.79681 -7.50823 -7.38129 -6.11511 -4.57058 3.16479 3.24372 3.28846 3.87807 4.15471 4.41307 4.66755 4.83879 5.01579 5.09532 5.33518 5.38899 5.50974 5.71433 5.84012 5.91065 6.05893 6.16750 6.29327 6.35897 6.44514 6.48120 6.91008 7.04645 7.49409 7.76531 8.02769 8.23331 8.42030 9.09219 9.64226 10.68184 10.88477 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047669 B = 0.007974 C = 0.007395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.240028 B = 3510.661656 C = 3785.218410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.194 3.806 3 H 0.089 0.911 4 N -0.764 5.764 5 C 0.556 3.444 6 O -0.578 6.578 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.087 3.913 10 N -0.768 5.768 11 Si 0.906 3.094 12 H -0.265 1.265 13 H -0.277 1.277 14 H -0.277 1.277 15 C -0.130 4.130 16 C 0.120 3.880 17 O -0.560 6.560 18 C -0.169 4.169 19 C -0.173 4.173 20 H 0.043 0.957 21 H 0.059 0.941 22 H 0.047 0.953 23 H 0.376 0.624 24 H 0.267 0.733 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.373 0.627 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.061 -5.892 -12.282 13.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.087 3.913 3 H 0.107 0.893 4 N -0.419 5.419 5 C 0.360 3.640 6 O -0.461 6.461 7 C -0.584 4.584 8 H 0.084 0.916 9 C -0.132 4.132 10 N -0.397 5.397 11 Si 0.731 3.269 12 H -0.189 1.189 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.131 4.131 16 C 0.042 3.958 17 O -0.364 6.364 18 C -0.206 4.206 19 C -0.210 4.210 20 H 0.062 0.938 21 H 0.078 0.922 22 H 0.066 0.934 23 H 0.208 0.792 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.219 0.781 28 H 0.107 0.893 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.101 -5.001 -11.509 12.597 hybrid contribution 0.235 -0.853 0.089 0.890 sum -0.865 -5.854 -11.420 12.862 Atomic orbital electron populations 1.22080 0.97000 1.00465 1.01303 1.19751 0.92286 0.97153 0.82071 0.89278 1.46305 1.73487 1.11769 1.10369 1.18191 0.77654 0.86496 0.81673 1.90598 1.55293 1.15894 1.84286 1.20924 1.47128 0.96337 0.94001 0.91586 1.25700 0.93420 0.94468 0.99610 1.70039 1.35615 1.07695 1.26351 0.86350 0.78759 0.80286 0.81531 1.18857 1.20215 1.20229 1.21773 1.02036 0.92974 0.96338 1.21525 0.98714 0.81230 0.94318 1.86631 1.92878 1.17782 1.39129 1.23128 0.90521 1.03242 1.03675 1.22994 1.02062 0.92943 1.02996 0.93796 0.92167 0.93370 0.79151 0.92264 0.93472 0.93970 0.78061 0.89342 0.87631 0.88209 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.37 37.16 0.35 -2.52 16 2 C 0.19 4.01 2.36 -67.93 -0.16 3.85 16 3 H 0.09 2.22 6.95 -51.93 -0.36 1.86 16 4 N -0.76 -17.74 4.23 -55.21 -0.23 -17.98 16 5 C 0.56 16.30 7.73 -12.98 -0.10 16.20 16 6 O -0.58 -19.31 14.65 5.20 0.08 -19.23 16 7 C -0.55 -15.84 9.54 -35.63 -0.34 -16.18 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 9 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 10 N -0.77 -23.60 11.83 55.55 0.66 -22.95 16 11 Si 0.91 20.59 29.56 -169.99 -5.02 15.56 16 12 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 15 C -0.13 -2.08 1.95 -154.51 -0.30 -2.38 16 16 C 0.12 1.57 6.54 37.16 0.24 1.81 16 17 O -0.56 -8.05 12.69 -35.23 -0.45 -8.50 16 18 C -0.17 -2.53 9.42 -26.74 -0.25 -2.78 16 19 C -0.17 -2.32 9.51 -26.73 -0.25 -2.57 16 20 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 22 H 0.05 0.81 7.67 -51.93 -0.40 0.41 16 23 H 0.38 7.76 6.11 -40.82 -0.25 7.51 16 24 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 25 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 26 H 0.04 0.46 7.94 -51.93 -0.41 0.05 16 27 H 0.37 3.26 9.12 45.56 0.42 3.67 16 28 H 0.09 1.14 8.08 -51.93 -0.42 0.72 16 29 H 0.11 1.81 7.18 -51.93 -0.37 1.44 16 30 H 0.10 1.39 6.89 -51.93 -0.36 1.03 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 264.79 15.07 3.99 3.99 Total: -1.00 -35.85 264.79 -5.28 -41.14 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -3.39 Total: 10.12 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.91 Total: -2.16 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.42 Total: -40.92 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.37 Total: -27.73 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -35.85 -5.28 -41.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598037419.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.120 kcal (2) G-P(sol) polarization free energy of solvation -35.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds