Wall clock time and date at job start Sun Mar 29 2020 21:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47476 * 2 1 4 4 N 1.46502 * 109.47040 * 120.00336 * 2 1 3 5 5 C 1.34783 * 119.99671 * 273.20131 * 4 2 1 6 6 O 1.21685 * 120.00114 * 359.97438 * 5 4 2 7 7 C 1.46374 * 119.99763 * 180.02562 * 5 4 2 8 8 H 1.08002 * 120.00119 * 359.97438 * 7 5 4 9 9 C 1.40047 * 119.99958 * 179.97438 * 7 5 4 10 10 N 1.30676 * 120.00041 * 359.97438 * 9 7 5 11 11 Si 1.86794 * 119.99978 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47459 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47309 * 120.00081 * 11 9 7 14 14 H 1.48505 * 109.47473 * 239.99986 * 11 9 7 15 15 C 1.52998 * 109.47142 * 239.99988 * 2 1 3 16 16 C 1.53005 * 115.54968 * 65.28530 * 15 2 1 17 17 O 1.42900 * 109.47016 * 39.57166 * 16 15 2 18 18 C 1.52993 * 117.52089 * 210.98842 * 15 2 1 19 19 C 1.52998 * 60.00279 * 107.48257 * 18 15 2 20 20 H 1.08997 * 109.46969 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46902 * 299.99962 * 1 2 3 22 22 H 1.09000 * 109.46694 * 59.99637 * 1 2 3 23 23 H 0.96994 * 120.00190 * 93.20318 * 4 2 1 24 24 H 0.96991 * 119.99951 * 180.02562 * 10 9 7 25 25 H 1.08994 * 109.47286 * 279.57396 * 16 15 2 26 26 H 1.09003 * 109.46939 * 159.57125 * 16 15 2 27 27 H 0.96693 * 114.00159 * 179.97438 * 17 16 15 28 28 H 1.08997 * 117.50107 * 214.96950 * 18 15 2 29 29 H 1.08998 * 117.49807 * 359.97438 * 18 15 2 30 30 H 1.09005 * 117.50011 * 252.51642 * 19 18 15 31 31 H 1.08996 * 117.52193 * 107.48068 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1815 -0.0099 2.3479 6 8 1.9237 1.1784 2.3941 7 6 2.6699 -0.6999 3.5429 8 1 2.8992 -1.7545 3.5018 9 6 2.8400 0.0075 4.7396 10 7 2.5631 1.2836 4.7892 11 14 3.4626 -0.8731 6.2647 12 1 3.7002 -2.3043 5.9477 13 1 4.7324 -0.2477 6.7137 14 1 2.4497 -0.7676 7.3455 15 6 2.0400 -0.7212 -1.2492 16 6 1.7159 -0.0425 -2.5816 17 8 1.8611 1.3723 -2.4432 18 6 3.3723 -1.4656 -1.1414 19 6 2.0617 -2.2509 -1.2225 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 2.2243 -1.6378 1.1592 24 1 2.6812 1.7736 5.6179 25 1 0.6906 -0.2761 -2.8684 26 1 2.3995 -0.4046 -3.3496 27 1 1.6712 1.8681 -3.2514 28 1 4.0179 -1.4719 -2.0196 29 1 3.8860 -1.4413 -0.1803 30 1 1.7130 -2.7433 -0.3147 31 1 1.8447 -2.7736 -2.1540 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598037419.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:14 Heat of formation + Delta-G solvation = -97.416740 kcal Electronic energy + Delta-G solvation = -14576.164982 eV Core-core repulsion = 12050.075993 eV Total energy + Delta-G solvation = -2526.088989 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.57387 -38.64128 -36.85427 -34.86105 -34.12590 -31.39223 -28.33429 -27.49992 -24.65589 -23.24477 -21.76905 -20.01967 -19.08005 -18.26589 -17.57650 -16.67427 -16.33473 -15.63556 -15.36877 -14.90565 -14.68841 -14.28056 -14.02628 -13.52538 -13.25712 -13.03136 -12.75971 -12.62682 -12.43645 -12.35813 -11.99485 -11.74380 -11.32396 -11.03917 -10.94714 -10.47146 -9.83134 -9.41755 -8.28515 -6.85769 1.38684 1.39515 1.57348 2.24266 2.48337 2.76272 3.12071 3.41079 3.64261 3.76519 3.98549 4.12858 4.26718 4.52002 4.56905 4.65420 4.77890 4.80310 4.85791 5.05727 5.08718 5.20602 5.28919 5.31199 5.41193 5.89120 6.25365 6.35134 6.86576 7.03476 7.57957 8.52062 8.69449 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047669 B = 0.007974 C = 0.007395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.240028 B = 3510.661656 C = 3785.218410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.191 3.809 3 H 0.036 0.964 4 N -0.750 5.750 5 C 0.538 3.462 6 O -0.632 6.632 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.026 3.974 10 N -0.823 5.823 11 Si 1.000 3.000 12 H -0.246 1.246 13 H -0.268 1.268 14 H -0.268 1.268 15 C -0.150 4.150 16 C 0.122 3.878 17 O -0.594 6.594 18 C -0.177 4.177 19 C -0.143 4.143 20 H 0.066 0.934 21 H 0.016 0.984 22 H 0.074 0.926 23 H 0.390 0.610 24 H 0.274 0.726 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.395 0.605 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 -8.495 -13.289 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.086 3.914 3 H 0.054 0.946 4 N -0.404 5.404 5 C 0.342 3.658 6 O -0.520 6.520 7 C -0.612 4.612 8 H 0.104 0.896 9 C -0.189 4.189 10 N -0.453 5.453 11 Si 0.819 3.181 12 H -0.169 1.169 13 H -0.193 1.193 14 H -0.193 1.193 15 C -0.151 4.151 16 C 0.044 3.956 17 O -0.403 6.403 18 C -0.214 4.214 19 C -0.180 4.180 20 H 0.085 0.915 21 H 0.035 0.965 22 H 0.092 0.908 23 H 0.225 0.775 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.245 0.755 28 H 0.132 0.868 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.863 -7.646 -12.586 14.752 hybrid contribution 0.150 -0.010 0.328 0.361 sum -0.713 -7.656 -12.258 14.470 Atomic orbital electron populations 1.21957 0.95780 1.01597 1.00418 1.19748 0.93249 0.95041 0.83367 0.94568 1.45966 1.72317 1.12248 1.09902 1.18621 0.77462 0.86141 0.83552 1.90549 1.57652 1.18197 1.85571 1.21462 1.47565 0.97448 0.94676 0.89588 1.27021 0.92863 0.95186 1.03794 1.70215 1.36906 1.10173 1.28009 0.84944 0.78137 0.79357 0.75641 1.16902 1.19335 1.19270 1.21753 1.03152 0.94799 0.95358 1.21641 1.00728 0.80355 0.92874 1.86588 1.93205 1.19073 1.41386 1.23151 0.91037 1.03981 1.03275 1.23097 0.99506 0.90811 1.04598 0.91464 0.96494 0.90763 0.77477 0.91642 0.91329 0.91016 0.75483 0.86764 0.90714 0.88889 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 9.37 71.98 0.67 -4.68 16 2 C 0.19 8.13 2.36 44.99 0.11 8.23 16 3 H 0.04 1.92 6.95 -2.39 -0.02 1.90 16 4 N -0.75 -35.81 4.23 -446.81 -1.89 -37.70 16 5 C 0.54 32.94 7.73 86.36 0.67 33.61 16 6 O -0.63 -44.87 14.65 -4.30 -0.06 -44.93 16 7 C -0.57 -33.92 9.54 24.83 0.24 -33.69 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.52 16 9 C 0.03 1.50 5.50 85.30 0.47 1.97 16 10 N -0.82 -52.37 11.83 21.84 0.26 -52.11 16 11 Si 1.00 42.26 29.56 68.60 2.03 44.29 16 12 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 13 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 14 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 15 C -0.15 -4.52 1.95 -52.18 -0.10 -4.62 16 16 C 0.12 2.81 6.54 71.98 0.47 3.28 16 17 O -0.59 -16.49 12.69 -148.98 -1.89 -18.38 16 18 C -0.18 -4.98 9.42 30.59 0.29 -4.69 16 19 C -0.14 -3.34 9.51 30.59 0.29 -3.05 16 20 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 21 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.07 2.43 7.67 -2.39 -0.02 2.41 16 23 H 0.39 16.17 6.11 -92.71 -0.57 15.61 16 24 H 0.27 15.69 8.29 -92.71 -0.77 14.92 16 25 H 0.07 1.28 8.09 -2.39 -0.02 1.27 16 26 H 0.07 1.25 7.94 -2.39 -0.02 1.23 16 27 H 0.40 6.31 9.12 -74.06 -0.68 5.64 16 28 H 0.11 2.59 8.08 -2.39 -0.02 2.57 16 29 H 0.07 2.56 7.18 -2.39 -0.02 2.54 16 30 H 0.09 2.31 6.89 -2.38 -0.02 2.29 16 31 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -83.21 264.79 1.45 -81.76 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: -0.10 Total: 30.72 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 3.10 Total: -3.64 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -1.63 Total: -89.82 kcal Atomic # 8 Polarization: -61.36 SS G_CDS: -1.95 Total: -63.32 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -83.21 1.45 -81.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598037419.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.655 kcal (2) G-P(sol) polarization free energy of solvation -83.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds