Wall clock time and date at job start Sun Mar 29 2020 21:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46753 * 2 1 4 4 N 1.46498 * 109.47444 * 239.99796 * 2 1 3 5 5 C 1.34776 * 119.99944 * 90.46096 * 4 2 1 6 6 O 1.21687 * 120.00044 * 0.02562 * 5 4 2 7 7 C 1.46379 * 119.99977 * 180.02562 * 5 4 2 8 8 H 1.07999 * 119.99536 * 353.16888 * 7 5 4 9 9 C 1.40044 * 120.00074 * 173.17289 * 7 5 4 10 10 N 1.30673 * 119.99758 * 6.96105 * 9 7 5 11 11 Si 1.86798 * 120.00025 * 186.96763 * 9 7 5 12 12 H 1.48496 * 109.47363 * 94.96028 * 11 9 7 13 13 H 1.48507 * 109.47060 * 214.96299 * 11 9 7 14 14 H 1.48502 * 109.46725 * 334.95751 * 11 9 7 15 15 C 1.53000 * 109.47082 * 119.99588 * 2 1 3 16 16 C 1.53001 * 115.56326 * 280.53974 * 15 2 1 17 17 O 1.42902 * 109.47227 * 320.21314 * 16 15 2 18 18 C 1.52998 * 117.49662 * 66.22923 * 15 2 1 19 19 C 1.52996 * 117.49954 * 134.85275 * 15 2 1 20 20 H 1.09000 * 109.47051 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47196 * 300.00257 * 1 2 3 22 22 H 1.09000 * 109.47243 * 60.00722 * 1 2 3 23 23 H 0.97003 * 119.99847 * 270.46973 * 4 2 1 24 24 H 0.97001 * 119.99543 * 179.97438 * 10 9 7 25 25 H 1.09004 * 109.46701 * 80.21144 * 16 15 2 26 26 H 1.08993 * 109.47373 * 200.21402 * 16 15 2 27 27 H 0.96693 * 114.00101 * 179.97438 * 17 16 15 28 28 H 1.08996 * 117.49874 * 0.02562 * 18 15 2 29 29 H 1.09009 * 117.49790 * 214.97677 * 18 15 2 30 30 H 1.08997 * 117.50247 * 145.02244 * 19 15 2 31 31 H 1.09007 * 117.49926 * 359.97438 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.2519 0.0040 -2.3272 6 8 2.0575 1.2050 -2.3548 7 6 2.7394 -0.6861 -3.5225 8 1 3.0169 -1.7285 -3.4687 9 6 2.8461 0.0052 -4.7357 10 7 2.6418 1.2954 -4.7726 11 14 3.2802 -0.9169 -6.3012 12 1 2.0346 -1.2792 -7.0239 13 1 4.1216 -0.0527 -7.1675 14 1 4.0296 -2.1517 -5.9565 15 6 2.0400 -0.7212 1.2493 16 6 2.0221 0.1008 2.5397 17 8 2.4273 1.4415 2.2561 18 6 1.7597 -2.2209 1.3631 19 6 3.1779 -1.7279 1.0688 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 2.1736 -1.6479 -1.1740 24 1 2.7160 1.7743 -5.6129 25 1 1.0135 0.1058 2.9532 26 1 2.7086 -0.3412 3.2616 27 1 2.4388 2.0209 3.0301 28 1 1.2124 -2.6939 0.5477 29 1 1.5625 -2.6221 2.3573 30 1 3.9137 -1.8047 1.8693 31 1 3.5629 -1.8767 0.0600 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598037420.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:17 Heat of formation + Delta-G solvation = -67.447195 kcal Electronic energy + Delta-G solvation = -14577.062159 eV Core-core repulsion = 12052.272747 eV Total energy + Delta-G solvation = -2524.789412 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.10015 -36.74767 -35.62041 -32.87983 -32.05303 -29.55794 -26.69607 -25.97930 -23.04522 -22.02075 -19.81310 -18.35194 -17.41901 -17.04420 -15.52285 -15.18594 -14.81617 -14.07975 -13.81750 -13.24143 -12.99216 -12.75925 -12.25946 -12.01148 -11.54138 -11.26378 -11.20690 -10.92803 -10.79026 -10.51352 -10.36349 -10.20452 -10.12743 -9.68626 -9.32822 -8.77937 -7.50265 -7.37727 -6.12040 -4.55927 3.17777 3.24630 3.28233 3.88170 4.16140 4.42717 4.66756 4.85803 5.02803 5.11052 5.33485 5.39047 5.50387 5.73338 5.82599 5.90596 6.05581 6.14658 6.28573 6.33175 6.44197 6.45708 6.88693 7.04716 7.50248 7.79711 8.03518 8.23646 8.42783 9.09781 9.64678 10.68437 10.88755 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045929 B = 0.008038 C = 0.007521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.486373 B = 3482.730636 C = 3722.024243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.188 3.812 3 H 0.096 0.904 4 N -0.762 5.762 5 C 0.557 3.443 6 O -0.579 6.579 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.088 3.912 10 N -0.768 5.768 11 Si 0.906 3.094 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.265 1.265 15 C -0.130 4.130 16 C 0.120 3.880 17 O -0.559 6.559 18 C -0.173 4.173 19 C -0.169 4.169 20 H 0.044 0.956 21 H 0.046 0.954 22 H 0.059 0.941 23 H 0.376 0.624 24 H 0.267 0.733 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.373 0.627 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 -5.778 12.146 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.082 3.918 3 H 0.114 0.886 4 N -0.417 5.417 5 C 0.360 3.640 6 O -0.461 6.461 7 C -0.585 4.585 8 H 0.084 0.916 9 C -0.131 4.131 10 N -0.397 5.397 11 Si 0.731 3.269 12 H -0.199 1.199 13 H -0.205 1.205 14 H -0.190 1.190 15 C -0.131 4.131 16 C 0.041 3.959 17 O -0.364 6.364 18 C -0.210 4.210 19 C -0.206 4.206 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.078 0.922 23 H 0.209 0.791 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.219 0.781 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.523 -4.944 11.393 12.512 hybrid contribution 0.197 -0.817 -0.107 0.848 sum -1.327 -5.761 11.286 12.740 Atomic orbital electron populations 1.22113 0.97090 1.00595 1.01158 1.19818 0.92050 0.97739 0.82179 0.88617 1.46283 1.73552 1.10208 1.11659 1.18190 0.77510 0.86633 0.81627 1.90595 1.56963 1.14987 1.83564 1.20883 1.46853 0.97586 0.93183 0.91589 1.25692 0.93108 0.94422 0.99927 1.70040 1.35740 1.07514 1.26365 0.86396 0.78820 0.80066 0.81654 1.19882 1.20508 1.18964 1.21801 1.04198 0.90233 0.96895 1.21521 0.97582 0.82667 0.94101 1.86643 1.91042 1.21023 1.37642 1.22999 0.99806 0.95618 1.02558 1.23156 0.91138 1.02765 1.03566 0.93648 0.93498 0.92236 0.79149 0.92224 0.93533 0.93971 0.78056 0.88314 0.89229 0.89334 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.41 37.16 0.35 -2.49 16 2 C 0.19 3.90 2.59 -67.93 -0.18 3.73 16 3 H 0.10 2.39 6.40 -51.93 -0.33 2.05 16 4 N -0.76 -17.75 4.28 -55.21 -0.24 -17.99 16 5 C 0.56 16.37 7.74 -12.99 -0.10 16.27 16 6 O -0.58 -19.38 14.62 5.20 0.08 -19.31 16 7 C -0.55 -15.91 9.53 -35.63 -0.34 -16.25 16 8 H 0.07 1.76 7.86 -52.49 -0.41 1.35 16 9 C 0.09 2.52 5.49 -17.37 -0.10 2.43 16 10 N -0.77 -23.63 11.86 55.55 0.66 -22.97 16 11 Si 0.91 20.62 29.56 -169.99 -5.03 15.60 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 15 C -0.13 -2.09 1.92 -154.51 -0.30 -2.39 16 16 C 0.12 1.59 7.11 37.16 0.26 1.86 16 17 O -0.56 -8.39 12.46 -35.23 -0.44 -8.83 16 18 C -0.17 -2.28 9.17 -26.73 -0.25 -2.53 16 19 C -0.17 -2.53 9.36 -26.73 -0.25 -2.78 16 20 H 0.04 0.76 7.73 -51.93 -0.40 0.36 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 22 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 23 H 0.38 7.78 6.34 -40.82 -0.26 7.53 16 24 H 0.27 7.44 8.29 -40.82 -0.34 7.11 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.47 7.95 -51.93 -0.41 0.06 16 27 H 0.37 3.46 9.12 45.56 0.42 3.88 16 28 H 0.10 1.34 7.63 -51.93 -0.40 0.94 16 29 H 0.09 0.97 8.14 -51.92 -0.42 0.54 16 30 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 31 H 0.11 1.79 6.45 -51.93 -0.34 1.46 16 LS Contribution 264.86 15.07 3.99 3.99 Total: -1.00 -36.02 264.86 -5.24 -41.26 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -3.38 Total: 10.39 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -0.89 Total: -2.15 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.42 Total: -40.96 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.36 Total: -28.14 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -36.02 -5.24 -41.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598037420.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.184 kcal (2) G-P(sol) polarization free energy of solvation -36.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds