Wall clock time and date at job start Sun Mar 29 2020 22:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.52779 * 2 1 4 4 C 1.53044 * 109.49686 * 239.91482 * 2 1 3 5 5 C 1.53036 * 109.53677 * 178.68456 * 4 2 1 6 6 C 1.53200 * 109.31408 * 61.37148 * 5 4 2 7 7 H 1.09001 * 109.70035 * 65.21579 * 6 5 4 8 8 C 1.52997 * 109.58872 * 185.57749 * 6 5 4 9 9 O 1.42893 * 109.46886 * 184.28793 * 8 6 5 10 10 N 1.46931 * 108.77175 * 305.36489 * 6 5 4 11 11 C 1.36935 * 120.62607 * 233.59076 * 10 6 5 12 12 H 1.07992 * 120.00365 * 30.52537 * 11 10 6 13 13 C 1.38815 * 119.99548 * 210.53204 * 11 10 6 14 14 N 1.31622 * 120.00112 * 13.21254 * 13 11 10 15 15 Si 1.86800 * 120.00191 * 193.21546 * 13 11 10 16 16 H 1.48505 * 109.46905 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47155 * 119.99668 * 15 13 11 18 18 H 1.48489 * 109.47298 * 240.00137 * 15 13 11 19 19 C 1.46925 * 118.74038 * 53.60458 * 10 6 5 20 20 H 1.09002 * 109.47393 * 299.92566 * 1 2 3 21 21 H 1.09003 * 109.46897 * 59.91533 * 1 2 3 22 22 H 1.08994 * 109.47421 * 179.91734 * 1 2 3 23 23 H 1.09000 * 109.47119 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.46795 * 300.07860 * 3 2 1 25 25 H 1.09001 * 109.47227 * 60.07967 * 3 2 1 26 26 H 1.08995 * 109.46516 * 298.70982 * 4 2 1 27 27 H 1.09000 * 109.45878 * 58.68461 * 4 2 1 28 28 H 1.09001 * 109.50326 * 301.41513 * 5 4 2 29 29 H 1.09004 * 109.49808 * 181.31885 * 5 4 2 30 30 H 1.08998 * 109.47248 * 64.28729 * 8 6 5 31 31 H 1.08999 * 109.47005 * 304.28451 * 8 6 5 32 32 H 0.96694 * 114.00652 * 59.99905 * 9 8 6 33 33 H 0.96999 * 119.99971 * 180.02562 * 14 13 11 34 34 H 1.08994 * 109.58691 * 66.17986 * 19 10 6 35 35 H 1.08996 * 109.58528 * 186.60486 * 19 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0408 -0.7232 -1.2483 5 6 3.5708 -0.6951 -1.2660 6 6 4.1052 -1.4269 -0.0307 7 1 3.8394 -2.4826 -0.0854 8 6 5.6272 -1.2836 0.0318 9 8 6.1330 -2.0492 1.1272 10 7 3.5045 -0.8293 1.1697 11 6 4.2935 -0.3794 2.1945 12 1 5.2821 0.0026 1.9872 13 6 3.8226 -0.4147 3.4998 14 7 2.7423 -1.1080 3.7913 15 14 4.7218 0.5219 4.8428 16 1 5.8974 1.2169 4.2595 17 1 3.8057 1.5222 5.4471 18 1 5.1769 -0.4283 5.8892 19 6 2.0412 -0.7239 1.2496 20 1 -0.3634 0.5127 0.8907 21 1 -0.3633 0.5152 -0.8893 22 1 -0.3634 -1.0276 -0.0015 23 1 3.1314 1.4409 -0.0005 24 1 1.6774 1.9565 -0.8893 25 1 1.6797 1.9557 0.8907 26 1 1.6966 -1.7573 -1.2353 27 1 1.6584 -0.2244 -2.1389 28 1 3.9159 0.3387 -1.2541 29 1 3.9334 -1.1899 -2.1670 30 1 5.8880 -0.2345 0.1707 31 1 6.0648 -1.6469 -0.8980 32 1 5.9376 -2.9944 1.0701 33 1 2.4131 -1.1323 4.7033 34 1 1.6051 -1.7216 1.2980 35 1 1.7637 -0.1580 2.1389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598648117.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:50 Heat of formation + Delta-G solvation = -61.805177 kcal Electronic energy + Delta-G solvation = -15756.949905 eV Core-core repulsion = 13368.238244 eV Total energy + Delta-G solvation = -2388.711661 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27833 -37.56800 -35.33226 -33.86456 -31.68625 -28.70695 -28.02369 -27.27116 -24.86105 -23.73241 -21.64592 -19.43113 -18.36699 -17.82678 -16.69900 -15.92355 -15.69657 -15.35990 -15.03874 -14.78751 -14.67787 -13.91143 -13.36442 -13.35140 -12.95216 -12.89106 -12.74959 -12.52332 -12.47712 -12.11290 -11.99028 -11.76024 -11.54027 -11.26966 -11.16920 -10.87471 -10.50056 -10.30363 -8.46232 -7.72932 -5.17622 1.44628 1.47168 1.56131 2.58283 3.41645 3.59583 3.90447 4.02586 4.10011 4.20718 4.32662 4.50651 4.58037 4.68663 4.77345 4.88100 4.92188 5.02645 5.05014 5.10385 5.13145 5.17278 5.25779 5.38910 5.52367 5.56359 5.61973 5.77703 5.86039 5.89922 6.54302 7.06655 7.30504 7.99951 8.50903 9.33453 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.026352 B = 0.014758 C = 0.010904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.269548 B = 1896.845867 C = 2567.237118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.093 4.093 3 C -0.116 4.116 4 C -0.093 4.093 5 C -0.125 4.125 6 C 0.127 3.873 7 H 0.015 0.985 8 C 0.092 3.908 9 O -0.573 6.573 10 N -0.594 5.594 11 C -0.205 4.205 12 H 0.066 0.934 13 C -0.058 4.058 14 N -0.944 5.944 15 Si 0.951 3.049 16 H -0.271 1.271 17 H -0.296 1.296 18 H -0.300 1.300 19 C 0.195 3.805 20 H 0.040 0.960 21 H 0.072 0.928 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.028 0.972 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.375 0.625 33 H 0.241 0.759 34 H -0.018 1.018 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.475 1.290 -11.706 11.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.094 4.094 3 C -0.174 4.174 4 C -0.131 4.131 5 C -0.163 4.163 6 C 0.021 3.979 7 H 0.033 0.967 8 C 0.014 3.986 9 O -0.378 6.378 10 N -0.317 5.317 11 C -0.336 4.336 12 H 0.084 0.916 13 C -0.252 4.252 14 N -0.593 5.593 15 Si 0.782 3.218 16 H -0.196 1.196 17 H -0.223 1.223 18 H -0.227 1.227 19 C 0.070 3.930 20 H 0.059 0.941 21 H 0.091 0.909 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.222 0.778 33 H 0.050 0.950 34 H 0.000 1.000 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.284 1.870 -11.372 11.529 hybrid contribution -0.012 -0.377 1.251 1.306 sum -0.296 1.493 -10.122 10.236 Atomic orbital electron populations 1.21716 0.94269 1.01205 1.01480 1.21154 0.95328 0.96237 0.96720 1.21614 1.00901 0.94892 0.99952 1.21404 0.95451 0.99417 0.96790 1.21954 0.96136 1.01004 0.97248 1.21480 0.93946 0.94433 0.88087 0.96697 1.22266 0.91666 0.96021 0.88608 1.86594 1.79491 1.23442 1.48272 1.44244 1.01696 1.69452 1.16357 1.19296 0.98263 1.30481 0.85552 0.91621 1.25641 0.99472 1.01016 0.99045 1.70164 1.26726 1.44573 1.17832 0.85418 0.78221 0.78038 0.80136 1.19603 1.22299 1.22732 1.20577 0.82870 0.94624 0.94977 0.94066 0.90899 0.93351 0.93332 0.91771 0.95326 0.93379 0.90590 0.91846 0.90061 0.91104 0.91278 0.77807 0.94970 0.99996 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 8.48 71.98 0.61 -3.45 16 2 C -0.09 -3.38 0.77 -52.10 -0.04 -3.42 16 3 C -0.12 -4.11 7.99 71.98 0.57 -3.53 16 4 C -0.09 -2.87 4.71 30.62 0.14 -2.73 16 5 C -0.12 -3.85 5.03 30.67 0.15 -3.70 16 6 C 0.13 4.93 3.16 44.98 0.14 5.07 16 7 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 8 C 0.09 3.30 5.75 71.98 0.41 3.72 16 9 O -0.57 -23.31 11.95 -148.98 -1.78 -25.09 16 10 N -0.59 -28.99 2.42 -675.22 -1.64 -30.63 16 11 C -0.21 -11.23 7.83 84.03 0.66 -10.57 16 12 H 0.07 3.64 5.88 -2.91 -0.02 3.62 16 13 C -0.06 -3.37 4.99 84.86 0.42 -2.95 16 14 N -0.94 -57.70 11.14 21.65 0.24 -57.45 16 15 Si 0.95 47.56 29.57 68.60 2.03 49.59 16 16 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 17 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 18 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 19 C 0.20 9.45 3.95 86.36 0.34 9.79 16 20 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.05 1.87 5.97 -2.39 -0.01 1.85 16 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.06 2.00 6.33 -2.39 -0.02 1.98 16 29 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.07 2.73 7.12 -2.39 -0.02 2.72 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.38 12.70 9.08 -74.06 -0.67 12.03 16 33 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 34 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 35 H 0.05 2.68 6.12 -2.39 -0.01 2.66 16 Total: -1.00 -65.85 267.45 2.66 -63.19 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.39 Total: 12.15 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 3.42 Total: -11.76 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -1.40 Total: -88.08 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -1.78 Total: -25.09 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -65.85 2.66 -63.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598648117.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.385 kcal (2) G-P(sol) polarization free energy of solvation -65.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds