Wall clock time and date at job start Sun Mar 29 2020 22:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47235 * 2 1 4 4 C 1.42906 * 114.00088 * 177.61746 * 3 2 1 5 5 H 1.09004 * 109.46931 * 329.50986 * 4 3 2 6 6 C 1.50700 * 109.46656 * 89.50822 * 4 3 2 7 7 O 1.21287 * 120.00308 * 4.99777 * 6 4 3 8 8 N 1.34781 * 119.99896 * 185.00190 * 6 4 3 9 9 C 1.37092 * 120.00459 * 179.97438 * 8 6 4 10 10 H 1.08005 * 119.99545 * 359.97438 * 9 8 6 11 11 C 1.38948 * 120.00424 * 179.97438 * 9 8 6 12 12 N 1.31408 * 119.99723 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99942 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47175 * 90.00304 * 13 11 9 15 15 H 1.48501 * 109.46854 * 209.99821 * 13 11 9 16 16 H 1.48495 * 109.47364 * 329.99890 * 13 11 9 17 17 C 1.52999 * 109.47010 * 209.50622 * 4 3 2 18 18 C 1.52995 * 117.52072 * 356.31787 * 17 4 3 19 19 C 1.52999 * 117.50118 * 64.95209 * 17 4 3 20 20 H 1.08995 * 109.47409 * 300.00669 * 1 2 3 21 21 H 1.09007 * 109.46432 * 60.00339 * 1 2 3 22 22 H 1.09003 * 109.47427 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47903 * 239.99521 * 2 1 3 24 24 H 1.09009 * 109.46896 * 119.99417 * 2 1 3 25 25 H 0.97002 * 119.99466 * 359.97438 * 8 6 4 26 26 H 0.97001 * 119.99827 * 180.02562 * 12 11 9 27 27 H 1.09007 * 115.54589 * 210.61407 * 17 4 3 28 28 H 1.08998 * 117.49943 * 214.97012 * 18 17 4 29 29 H 1.08995 * 117.49826 * 359.97438 * 18 17 4 30 30 H 1.09001 * 117.49499 * 359.96868 * 19 17 4 31 31 H 1.09000 * 117.50292 * 144.99228 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4298 1.4605 0.0543 5 1 3.8409 0.6137 0.6040 6 6 3.9868 1.4684 -1.3460 7 8 3.2349 1.4768 -2.2977 8 7 5.3204 1.4661 -1.5409 9 6 5.8272 1.4727 -2.8147 10 1 5.1576 1.4795 -3.6621 11 6 7.2021 1.4709 -3.0155 12 7 8.0166 1.4622 -1.9844 13 14 7.8924 1.4807 -4.7512 14 1 8.0787 2.8834 -5.2019 15 1 9.2004 0.7777 -4.7676 16 1 6.9472 0.7889 -5.6639 17 6 3.8113 2.7620 0.7623 18 6 2.6759 3.6986 1.1799 19 6 3.4367 2.8988 2.2394 20 1 -0.3634 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 5.9217 1.4596 -0.7797 26 1 8.9765 1.4612 -2.1246 27 1 4.7459 3.2183 0.4357 28 1 2.8634 4.7711 1.1281 29 1 1.6568 3.3879 0.9499 30 1 2.9180 2.0617 2.7066 31 1 4.1247 3.4451 2.8846 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599232990.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:42 Heat of formation + Delta-G solvation = -66.485057 kcal Electronic energy + Delta-G solvation = -14436.462996 eV Core-core repulsion = 11911.715306 eV Total energy + Delta-G solvation = -2524.747691 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.15099 -36.96961 -35.92167 -33.86202 -31.28512 -30.93094 -27.65324 -24.47875 -22.62586 -21.94488 -20.76681 -19.27203 -17.99328 -16.52679 -16.08285 -15.30521 -14.82742 -14.61907 -14.16330 -13.74752 -13.05342 -12.76568 -12.48483 -12.28022 -11.61511 -11.44003 -11.22852 -11.13930 -10.93026 -10.85834 -10.39158 -10.22344 -10.13587 -9.75372 -9.66117 -9.49542 -8.05403 -7.96694 -6.41885 -3.82685 3.17272 3.26331 3.32383 3.70925 3.98983 4.19954 4.25578 4.91226 5.08346 5.22304 5.30529 5.33179 5.39358 5.48426 5.62668 5.69769 5.88188 5.89833 6.01222 6.17718 6.20724 6.31980 6.34412 6.41874 6.60165 7.54834 7.55816 8.05818 8.61750 9.17791 9.53634 10.05588 10.75570 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036234 B = 0.008274 C = 0.007206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.559213 B = 3383.082883 C = 3884.702309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.057 3.943 3 O -0.357 6.357 4 C 0.113 3.887 5 H 0.072 0.928 6 C 0.424 3.576 7 O -0.580 6.580 8 N -0.560 5.560 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.023 3.977 12 N -0.901 5.901 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.270 1.270 17 C -0.149 4.149 18 C -0.160 4.160 19 C -0.178 4.178 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.041 0.959 25 H 0.393 0.607 26 H 0.272 0.728 27 H 0.119 0.881 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.032 -0.558 8.029 10.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.052 3.948 5 H 0.090 0.910 6 C 0.209 3.791 7 O -0.465 6.465 8 N -0.197 5.197 9 C -0.430 4.430 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.542 5.542 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C -0.168 4.168 18 C -0.197 4.197 19 C -0.215 4.215 20 H 0.076 0.924 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.226 0.774 26 H 0.082 0.918 27 H 0.137 0.863 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.469 -0.407 7.380 10.508 hybrid contribution 1.094 -0.245 -0.411 1.193 sum -6.376 -0.651 6.970 9.468 Atomic orbital electron populations 1.21687 0.94124 1.01686 1.02808 1.22463 0.95222 0.84421 0.99892 1.87873 1.19250 1.25733 1.94671 1.21279 0.82247 0.96845 0.94454 0.90988 1.20395 0.83393 0.84823 0.90495 1.90520 1.58099 1.55204 1.42629 1.41911 1.04747 1.64030 1.09030 1.19721 0.90823 1.47583 0.84849 0.87952 1.25261 0.95880 0.97268 0.99452 1.69613 1.03970 1.50479 1.30145 0.85860 0.78146 0.78429 0.81882 1.20357 1.20891 1.19425 1.22368 1.00716 0.97460 0.96244 1.22803 0.97988 0.96702 1.02229 1.22942 1.03919 1.03291 0.91341 0.92361 0.91709 0.91566 0.92888 0.94122 0.77391 0.91836 0.86276 0.89286 0.87660 0.89069 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.28 37.16 0.38 -1.51 16 2 C 0.06 0.91 6.48 37.16 0.24 1.15 16 3 O -0.36 -6.81 7.89 -55.09 -0.43 -7.24 16 4 C 0.11 2.21 2.86 -27.88 -0.08 2.13 16 5 H 0.07 1.27 7.76 -51.93 -0.40 0.87 16 6 C 0.42 10.54 7.05 -10.98 -0.08 10.46 16 7 O -0.58 -16.68 16.08 -14.31 -0.23 -16.91 16 8 N -0.56 -14.52 5.16 -10.96 -0.06 -14.58 16 9 C -0.30 -8.51 9.68 -14.94 -0.14 -8.66 16 10 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 11 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 12 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 13 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 C -0.15 -2.57 5.70 -90.62 -0.52 -3.09 16 18 C -0.16 -2.45 9.87 -26.73 -0.26 -2.71 16 19 C -0.18 -2.43 10.24 -26.73 -0.27 -2.71 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.04 0.56 8.03 -51.92 -0.42 0.15 16 25 H 0.39 9.70 7.90 -40.82 -0.32 9.37 16 26 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 27 H 0.12 2.16 7.99 -51.92 -0.41 1.74 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.11 1.68 7.03 -51.93 -0.36 1.32 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 271.88 15.07 4.10 4.10 Total: -1.00 -31.49 271.88 -6.14 -37.64 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -4.39 Total: 9.09 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -0.83 Total: -4.41 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.67 Total: -38.45 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.66 Total: -24.15 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.49 -6.14 -37.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599232990.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.850 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds