Wall clock time and date at job start Sun Mar 29 2020 22:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47235 * 2 1 4 4 C 1.42906 * 114.00088 * 177.61746 * 3 2 1 5 5 H 1.09004 * 109.46931 * 329.50986 * 4 3 2 6 6 C 1.50700 * 109.46656 * 89.50822 * 4 3 2 7 7 O 1.21287 * 120.00308 * 4.99777 * 6 4 3 8 8 N 1.34781 * 119.99896 * 185.00190 * 6 4 3 9 9 C 1.37092 * 120.00459 * 179.97438 * 8 6 4 10 10 H 1.08005 * 119.99545 * 359.97438 * 9 8 6 11 11 C 1.38948 * 120.00424 * 179.97438 * 9 8 6 12 12 N 1.31408 * 119.99723 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99942 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47175 * 90.00304 * 13 11 9 15 15 H 1.48501 * 109.46854 * 209.99821 * 13 11 9 16 16 H 1.48495 * 109.47364 * 329.99890 * 13 11 9 17 17 C 1.52999 * 109.47010 * 209.50622 * 4 3 2 18 18 C 1.52995 * 117.52072 * 356.31787 * 17 4 3 19 19 C 1.52999 * 117.50118 * 64.95209 * 17 4 3 20 20 H 1.08995 * 109.47409 * 300.00669 * 1 2 3 21 21 H 1.09007 * 109.46432 * 60.00339 * 1 2 3 22 22 H 1.09003 * 109.47427 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47903 * 239.99521 * 2 1 3 24 24 H 1.09009 * 109.46896 * 119.99417 * 2 1 3 25 25 H 0.97002 * 119.99466 * 359.97438 * 8 6 4 26 26 H 0.97001 * 119.99827 * 180.02562 * 12 11 9 27 27 H 1.09007 * 115.54589 * 210.61407 * 17 4 3 28 28 H 1.08998 * 117.49943 * 214.97012 * 18 17 4 29 29 H 1.08995 * 117.49826 * 359.97438 * 18 17 4 30 30 H 1.09001 * 117.49499 * 359.96868 * 19 17 4 31 31 H 1.09000 * 117.50292 * 144.99228 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4298 1.4605 0.0543 5 1 3.8409 0.6137 0.6040 6 6 3.9868 1.4684 -1.3460 7 8 3.2349 1.4768 -2.2977 8 7 5.3204 1.4661 -1.5409 9 6 5.8272 1.4727 -2.8147 10 1 5.1576 1.4795 -3.6621 11 6 7.2021 1.4709 -3.0155 12 7 8.0166 1.4622 -1.9844 13 14 7.8924 1.4807 -4.7512 14 1 8.0787 2.8834 -5.2019 15 1 9.2004 0.7777 -4.7676 16 1 6.9472 0.7889 -5.6639 17 6 3.8113 2.7620 0.7623 18 6 2.6759 3.6986 1.1799 19 6 3.4367 2.8988 2.2394 20 1 -0.3634 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 5.9217 1.4596 -0.7797 26 1 8.9765 1.4612 -2.1246 27 1 4.7459 3.2183 0.4357 28 1 2.8634 4.7711 1.1281 29 1 1.6568 3.3879 0.9499 30 1 2.9180 2.0617 2.7066 31 1 4.1247 3.4451 2.8846 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599232990.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:42 Heat of formation + Delta-G solvation = -87.034155 kcal Electronic energy + Delta-G solvation = -14437.354072 eV Core-core repulsion = 11911.715306 eV Total energy + Delta-G solvation = -2525.638766 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.83317 -38.71362 -37.20957 -35.95423 -33.34428 -32.19148 -29.28619 -26.46096 -23.84036 -23.09884 -22.29927 -21.00103 -20.06973 -18.26353 -17.59481 -16.75911 -16.67590 -15.93084 -15.87329 -15.53554 -14.86425 -14.44577 -13.83820 -13.60135 -13.34015 -12.97599 -12.78099 -12.48336 -12.34439 -12.28887 -12.15443 -12.09736 -11.56198 -11.44648 -11.14531 -11.01409 -10.06780 -9.92272 -8.50631 -6.00529 1.34768 1.39506 1.52524 1.92335 2.25156 2.54337 2.99427 3.15636 3.19503 3.79527 3.97522 4.03936 4.15770 4.30526 4.33363 4.44683 4.49622 4.63787 4.84127 4.84377 5.01384 5.05907 5.25096 5.26600 5.36493 5.38569 5.90432 6.17538 6.55459 7.07163 7.48386 8.04032 8.66305 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036234 B = 0.008274 C = 0.007206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.559213 B = 3383.082883 C = 3884.702309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.046 3.954 3 O -0.369 6.369 4 C 0.125 3.875 5 H 0.093 0.907 6 C 0.417 3.583 7 O -0.628 6.628 8 N -0.563 5.563 9 C -0.340 4.340 10 H 0.076 0.924 11 C -0.009 4.009 12 N -0.916 5.916 13 Si 0.994 3.006 14 H -0.270 1.270 15 H -0.267 1.267 16 H -0.274 1.274 17 C -0.181 4.181 18 C -0.163 4.163 19 C -0.140 4.140 20 H 0.074 0.926 21 H 0.046 0.954 22 H 0.093 0.907 23 H 0.023 0.977 24 H 0.070 0.930 25 H 0.397 0.603 26 H 0.280 0.720 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.855 -0.617 9.475 11.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 O -0.287 6.287 4 C 0.064 3.936 5 H 0.110 0.890 6 C 0.204 3.796 7 O -0.515 6.515 8 N -0.200 5.200 9 C -0.469 4.469 10 H 0.094 0.906 11 C -0.209 4.209 12 N -0.556 5.556 13 Si 0.817 3.183 14 H -0.195 1.195 15 H -0.191 1.191 16 H -0.199 1.199 17 C -0.200 4.200 18 C -0.200 4.200 19 C -0.177 4.177 20 H 0.093 0.907 21 H 0.065 0.935 22 H 0.112 0.888 23 H 0.041 0.959 24 H 0.088 0.912 25 H 0.232 0.768 26 H 0.089 0.911 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.281 -0.467 8.864 11.480 hybrid contribution 1.016 -0.244 -0.843 1.343 sum -6.265 -0.711 8.021 10.202 Atomic orbital electron populations 1.21691 0.91692 1.03498 1.02726 1.22742 0.97284 0.83173 0.99822 1.87881 1.18746 1.27622 1.94440 1.21156 0.82511 0.99065 0.90887 0.88953 1.21515 0.82696 0.82802 0.92596 1.90474 1.59046 1.57016 1.45002 1.41940 1.05423 1.64195 1.08483 1.19681 0.91454 1.50477 0.85311 0.90559 1.26058 0.95435 0.95898 1.03520 1.69667 1.04536 1.49650 1.31797 0.84923 0.77680 0.78779 0.76922 1.19502 1.19124 1.19885 1.22253 1.01034 0.97172 0.99507 1.22878 0.96903 0.97277 1.02906 1.23059 1.02561 1.02831 0.89216 0.90706 0.93459 0.88833 0.95875 0.91196 0.76844 0.91053 0.87812 0.88057 0.88493 0.87616 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 10.28 71.98 0.74 -2.65 16 2 C 0.05 1.44 6.48 71.98 0.47 1.91 16 3 O -0.37 -13.88 7.89 -129.99 -1.03 -14.90 16 4 C 0.13 4.86 2.86 29.85 0.09 4.95 16 5 H 0.09 3.16 7.76 -2.38 -0.02 3.14 16 6 C 0.42 21.39 7.05 87.66 0.62 22.01 16 7 O -0.63 -37.76 16.08 15.94 0.26 -37.50 16 8 N -0.56 -30.11 5.16 -306.98 -1.58 -31.70 16 9 C -0.34 -19.88 9.68 84.04 0.81 -19.07 16 10 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 11 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 12 N -0.92 -49.68 13.05 21.66 0.28 -49.39 16 13 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 14 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 15 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 C -0.18 -6.06 5.70 -10.80 -0.06 -6.12 16 18 C -0.16 -4.68 9.87 30.59 0.30 -4.38 16 19 C -0.14 -3.37 10.24 30.60 0.31 -3.06 16 20 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 22 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.07 1.77 8.03 -2.38 -0.02 1.75 16 25 H 0.40 20.07 7.90 -92.71 -0.73 19.33 16 26 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 27 H 0.10 3.77 7.99 -2.38 -0.02 3.75 16 28 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.10 2.96 7.03 -2.39 -0.02 2.95 16 30 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -69.30 271.88 4.09 -65.21 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.39 Total: 29.33 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 3.74 Total: -6.42 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -1.30 Total: -81.09 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: -0.77 Total: -52.40 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -69.30 4.09 -65.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599232990.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.821 kcal (2) G-P(sol) polarization free energy of solvation -69.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds