Wall clock time and date at job start Sun Mar 29 2020 22:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 110.99846 * 2 1 4 4 C 1.52998 * 109.47512 * 66.04785 * 3 2 1 5 5 C 1.50703 * 109.47418 * 180.02562 * 4 3 2 6 6 H 1.07998 * 119.99577 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99788 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00586 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99730 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46923 * 59.99701 * 9 7 5 11 11 H 1.48499 * 109.47004 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46773 * 299.99808 * 9 7 5 13 13 C 1.46900 * 110.99946 * 236.04320 * 2 1 3 14 14 C 1.52995 * 109.47169 * 293.95506 * 13 2 1 15 15 C 1.53006 * 113.00028 * 309.66443 * 14 13 2 16 16 C 1.54033 * 113.92659 * 81.59951 * 14 13 2 17 17 O 1.44180 * 85.51695 * 136.81660 * 16 14 13 18 18 C 1.44179 * 93.34172 * 335.80744 * 17 16 14 19 19 H 1.09004 * 109.47315 * 183.95575 * 1 2 3 20 20 H 1.09001 * 109.46949 * 303.95243 * 1 2 3 21 21 H 1.09001 * 109.47396 * 63.95403 * 1 2 3 22 22 H 1.09005 * 109.47281 * 186.04872 * 3 2 1 23 23 H 1.08995 * 109.47344 * 306.04183 * 3 2 1 24 24 H 1.09006 * 109.46573 * 299.99898 * 4 3 2 25 25 H 1.08995 * 109.47308 * 59.99375 * 4 3 2 26 26 H 0.97001 * 120.00164 * 180.02562 * 8 7 5 27 27 H 1.09005 * 109.46558 * 173.95042 * 13 2 1 28 28 H 1.08994 * 109.46855 * 53.95831 * 13 2 1 29 29 H 1.08998 * 109.47216 * 297.84770 * 15 14 13 30 30 H 1.09002 * 109.46563 * 57.84001 * 15 14 13 31 31 H 1.08994 * 109.47220 * 177.84089 * 15 14 13 32 32 H 1.09003 * 113.86206 * 250.96180 * 16 14 13 33 33 H 1.08990 * 113.86508 * 22.67181 * 16 14 13 34 34 H 1.08993 * 113.86384 * 270.04716 * 18 17 16 35 35 H 1.08999 * 113.98278 * 138.35160 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1710 3.4646 1.3179 6 1 2.7190 3.8326 0.4632 7 6 1.9658 4.2818 2.4093 8 7 1.2989 3.8335 3.4504 9 14 2.6352 6.0258 2.4093 10 1 2.0430 6.7832 1.2775 11 1 2.2818 6.6917 3.6887 12 1 4.1123 5.9890 2.2613 13 6 1.9954 -0.7660 -1.1376 14 6 1.6314 -2.2426 -0.9703 15 6 1.9968 -2.7959 0.4086 16 6 0.1989 -2.5876 -1.4193 17 8 0.7925 -3.7489 -2.0340 18 6 2.0919 -3.1331 -2.1398 19 1 -0.3634 -1.0252 0.0709 20 1 -0.3633 0.5740 0.8525 21 1 -0.3634 0.4512 -0.9233 22 1 3.0797 1.3444 -0.1083 23 1 1.5611 1.9273 -0.8309 24 1 0.5471 2.0845 1.4264 25 1 2.0657 1.5016 2.1491 26 1 1.1542 4.4086 4.2181 27 1 3.0797 -0.6610 -1.1756 28 1 1.5611 -0.3873 -2.0627 29 1 3.0759 -2.7352 0.5502 30 1 1.4958 -2.2104 1.1795 31 1 1.6792 -3.8362 0.4786 32 1 -0.4769 -2.8211 -0.5966 33 1 -0.2227 -1.8787 -2.1317 34 1 2.2482 -2.5906 -3.0721 35 1 2.9188 -3.7975 -1.8891 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599571285.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:54 Heat of formation + Delta-G solvation = -16.962287 kcal Electronic energy + Delta-G solvation = -14620.365820 eV Core-core repulsion = 12233.598693 eV Total energy + Delta-G solvation = -2386.767128 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.75309 -37.00917 -33.29728 -31.96883 -29.37605 -27.43872 -26.52455 -26.04448 -24.78145 -22.21268 -19.86796 -18.75365 -16.58488 -16.11104 -15.95554 -15.74678 -14.76161 -14.47474 -14.24364 -13.50244 -13.19531 -12.89906 -12.23402 -12.09343 -12.02796 -11.78991 -11.40769 -11.23633 -11.03129 -10.87828 -10.68121 -10.40587 -10.25098 -9.85932 -9.67067 -9.28280 -9.13181 -8.33433 -7.74226 -6.00064 -4.02630 3.32835 3.37373 3.39531 3.69522 4.10415 4.42955 4.59222 4.90026 5.14969 5.17850 5.25541 5.35741 5.46772 5.64964 5.71954 5.78158 5.89876 5.90842 6.02124 6.05910 6.16333 6.19668 6.27709 6.43063 6.50261 6.55489 6.95731 7.47569 7.54939 7.78272 7.89151 8.07603 8.42927 9.04461 9.61034 11.11259 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.072522 B = 0.005613 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.998860 B = 4987.309201 C = 5062.294807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.536 5.536 3 C 0.062 3.938 4 C 0.028 3.972 5 C -0.523 4.523 6 H 0.053 0.947 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.061 3.939 14 C -0.118 4.118 15 C -0.117 4.117 16 C 0.040 3.960 17 O -0.385 6.385 18 C 0.040 3.960 19 H 0.059 0.941 20 H 0.078 0.922 21 H 0.016 0.984 22 H 0.059 0.941 23 H 0.018 0.982 24 H 0.017 0.983 25 H 0.024 0.976 26 H 0.261 0.739 27 H 0.074 0.926 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.027 -11.318 -8.757 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.260 5.260 3 C -0.064 4.064 4 C -0.009 4.009 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.068 4.068 14 C -0.119 4.119 15 C -0.174 4.174 16 C -0.036 4.036 17 O -0.303 6.303 18 C -0.038 4.038 19 H 0.078 0.922 20 H 0.097 0.903 21 H 0.035 0.965 22 H 0.078 0.922 23 H 0.037 0.963 24 H 0.035 0.965 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.033 -11.742 -8.214 14.329 hybrid contribution 0.131 1.661 -0.708 1.811 sum 0.098 -10.080 -8.922 13.462 Atomic orbital electron populations 1.22537 0.88315 1.01083 1.00963 1.62081 1.07450 1.15837 1.40621 1.22353 0.98481 0.85200 1.00403 1.19089 0.96889 0.93982 0.90927 1.21159 1.35280 0.97861 1.01921 0.92909 1.24983 0.95274 0.98434 0.95542 1.69957 1.40760 1.36511 1.06026 0.86662 0.79451 0.84701 0.77196 1.20321 1.21254 1.20231 1.22134 1.00373 0.91925 0.92367 1.23641 0.95217 0.95758 0.97266 1.21413 1.01925 0.99668 0.94405 1.24234 0.96148 0.86879 0.96358 1.89634 1.23433 1.33776 1.83503 1.24056 0.87620 0.94589 0.97511 0.92200 0.90287 0.96526 0.92204 0.96324 0.96466 0.95725 0.92931 0.90710 0.95260 0.92230 0.90246 0.93064 0.89060 0.90538 0.90508 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.75 60.06 0.53 0.84 16 2 N -0.54 -9.38 3.86 -242.92 -0.94 -10.32 16 3 C 0.06 1.30 4.90 -3.83 -0.02 1.28 16 4 C 0.03 0.74 4.90 -27.88 -0.14 0.60 16 5 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 6 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.06 0.86 4.56 -3.83 -0.02 0.85 16 14 C -0.12 -1.47 0.85 -153.43 -0.13 -1.60 16 15 C -0.12 -1.49 8.87 37.16 0.33 -1.16 16 16 C 0.04 0.49 6.18 37.61 0.23 0.72 16 17 O -0.38 -5.20 12.37 -35.23 -0.44 -5.63 16 18 C 0.04 0.44 8.36 37.61 0.31 0.76 16 19 H 0.06 0.83 5.09 -51.93 -0.26 0.56 16 20 H 0.08 1.46 6.30 -51.93 -0.33 1.13 16 21 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 22 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 23 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 24 H 0.02 0.47 6.47 -51.93 -0.34 0.13 16 25 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.07 1.04 7.93 -51.93 -0.41 0.63 16 28 H 0.03 0.41 7.97 -51.93 -0.41 -0.01 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.14 7.56 -51.93 -0.39 0.75 16 31 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.09 1.06 7.33 -51.93 -0.38 0.68 16 33 H 0.08 0.89 7.99 -51.93 -0.41 0.47 16 34 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 279.75 15.07 4.22 4.22 Total: -1.00 -30.08 279.75 -6.60 -36.68 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -5.85 Total: -4.20 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 0.69 Total: -11.23 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.20 Total: -36.41 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.44 Total: -5.63 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.08 -6.60 -36.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599571285.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.716 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds